Wall clock time and date at job start Tue Mar 31 2020 14:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38311 * 119.96112 * 2 1 4 4 C 1.38266 * 120.14696 * 179.97438 * 3 2 1 5 5 C 1.38123 * 120.07513 * 359.75490 * 4 3 2 6 6 C 1.38890 * 119.92505 * 0.47604 * 5 4 3 7 7 N 1.39679 * 120.07549 * 179.79159 * 6 5 4 8 8 C 1.46499 * 119.99941 * 204.72606 * 7 6 5 9 9 C 1.50701 * 109.46992 * 85.00203 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 S 1.65593 * 119.99664 * 24.72973 * 7 6 5 18 18 O 1.42098 * 104.28235 * 26.06930 * 17 7 6 19 19 O 1.42104 * 104.27721 * 153.92844 * 17 7 6 20 20 C 1.81401 * 104.45083 * 269.99525 * 17 7 6 21 21 C 1.53004 * 109.47307 * 179.97438 * 20 17 7 22 22 C 1.52997 * 109.46930 * 180.02562 * 21 20 17 23 23 C 1.53001 * 117.49987 * 243.75000 * 22 21 20 24 24 C 1.53001 * 117.49502 * 175.09135 * 22 21 20 25 25 C 1.38078 * 119.96453 * 179.97438 * 2 1 3 26 26 H 1.08992 * 109.46908 * 270.02154 * 1 2 3 27 27 H 1.09005 * 109.46952 * 30.01583 * 1 2 3 28 28 H 1.08999 * 109.46872 * 150.01396 * 1 2 3 29 29 H 1.07996 * 119.92922 * 0.02851 * 3 2 1 30 30 H 1.08001 * 119.96200 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.04013 * 180.27326 * 5 4 3 32 32 H 1.09002 * 109.47391 * 325.00193 * 8 7 6 33 33 H 1.09001 * 109.46813 * 205.00250 * 8 7 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.47077 * 300.00574 * 20 17 7 36 36 H 1.08998 * 109.46814 * 60.00635 * 20 17 7 37 37 H 1.09000 * 109.47076 * 300.00523 * 21 20 17 38 38 H 1.09008 * 109.46574 * 60.00460 * 21 20 17 39 39 H 1.08997 * 115.55120 * 29.41898 * 22 21 20 40 40 H 1.09000 * 117.49640 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50108 * 145.02474 * 23 22 21 42 42 H 1.09006 * 117.49494 * 214.98073 * 24 22 21 43 43 H 1.09000 * 117.50203 * 359.97438 * 24 22 21 44 44 H 1.08007 * 120.03470 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0062 6 6 3.5860 -1.1953 0.0013 7 7 4.2867 -2.4036 0.0026 8 6 3.6597 -3.6146 -0.5326 9 6 3.8602 -3.6663 -2.0254 10 1 4.4010 -2.8764 -2.5253 11 6 3.3541 -4.7227 -2.7527 12 7 2.6960 -5.6848 -2.1439 13 14 3.6033 -4.7871 -4.6029 14 1 5.0570 -4.8064 -4.9062 15 1 2.9676 -6.0146 -5.1455 16 1 2.9831 -3.5913 -5.2279 17 16 5.8262 -2.4672 0.6093 18 8 5.8780 -1.4003 1.5465 19 8 5.9833 -3.8167 1.0260 20 6 6.8898 -2.1136 -0.8170 21 6 8.3558 -2.1432 -0.3799 22 6 9.2527 -1.8444 -1.5828 23 6 10.2049 -2.9489 -2.0458 24 6 10.7558 -1.7141 -1.3281 25 6 2.1967 -1.1962 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6560 2.1325 0.0005 30 1 4.1168 2.1402 0.0010 31 1 5.3565 0.0139 0.0111 32 1 2.5928 -3.6004 -0.3097 33 1 4.1150 -4.4925 -0.0742 34 1 2.3397 -6.4278 -2.6557 35 1 6.7250 -2.8658 -1.5885 36 1 6.6493 -1.1274 -1.2139 37 1 8.5202 -1.3908 0.3914 38 1 8.5966 -3.1294 0.0173 39 1 8.8146 -1.2041 -2.3484 40 1 10.1926 -3.8883 -1.4931 41 1 10.3935 -3.0350 -3.1158 42 1 11.3065 -0.9883 -1.9265 43 1 11.1055 -1.8409 -0.3036 44 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770634631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:19 Heat of formation + Delta-G solvation = -29.209935 kcal Electronic energy + Delta-G solvation = -25886.310431 eV Core-core repulsion = 22317.276319 eV Total energy + Delta-G solvation = -3569.034112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.22199 -37.76825 -36.75000 -35.77771 -35.45820 -32.85656 -32.37015 -31.95271 -29.32869 -27.33428 -26.25523 -24.58676 -23.21026 -22.44748 -21.46602 -21.14265 -20.51544 -18.42918 -17.21141 -16.71850 -16.57109 -16.09355 -15.68474 -15.40435 -15.08059 -14.53698 -14.35611 -14.06062 -13.96046 -13.59464 -13.41875 -12.82836 -12.73722 -12.51899 -12.18978 -12.00529 -11.91876 -11.82188 -11.69730 -11.67790 -11.49435 -11.41945 -11.27769 -11.19308 -10.88082 -10.78635 -10.67940 -10.53239 -10.31688 -10.12373 -10.01972 -9.91029 -9.16449 -8.59486 -8.28459 -7.39322 -6.21629 -4.30333 0.65881 1.81384 1.93518 3.03768 3.20760 3.26440 3.28450 3.69125 4.07912 4.24847 4.34287 4.53059 4.62392 4.68872 4.81891 5.01679 5.07398 5.14936 5.19196 5.21173 5.34647 5.44805 5.51266 5.54526 5.57603 5.70492 5.77172 5.80929 5.83136 5.85939 6.03012 6.04421 6.08884 6.15495 6.20586 6.33541 6.55275 6.75103 6.90475 7.06338 7.22502 7.23834 7.28119 7.68696 7.73848 7.97085 8.72643 9.36390 10.85853 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.006021 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.319237 B = 4649.399573 C = 6636.305950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.162 4.162 4 C -0.086 4.086 5 C -0.179 4.179 6 C 0.210 3.790 7 N -0.926 5.926 8 C 0.232 3.768 9 C -0.548 4.548 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.885 5.885 13 Si 0.896 3.104 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.275 1.275 17 S 2.603 3.397 18 O -0.962 6.962 19 O -0.946 6.946 20 C -0.627 4.627 21 C -0.080 4.080 22 C -0.143 4.143 23 C -0.181 4.181 24 C -0.183 4.183 25 C -0.140 4.140 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.267 0.733 35 H 0.148 0.852 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 10.551 1.666 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.064 4.064 3 C -0.182 4.182 4 C -0.104 4.104 5 C -0.200 4.200 6 C 0.111 3.889 7 N -0.750 5.750 8 C 0.112 3.888 9 C -0.587 4.587 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 S 2.698 3.302 18 O -0.952 6.952 19 O -0.936 6.936 20 C -0.756 4.756 21 C -0.119 4.119 22 C -0.163 4.163 23 C -0.217 4.217 24 C -0.221 4.221 25 C -0.162 4.162 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.414 10.031 2.540 12.175 hybrid contribution 0.160 -0.045 -1.960 1.967 sum 6.574 9.986 0.580 11.970 Atomic orbital electron populations 1.20765 0.91505 1.02611 1.01947 1.19693 0.95683 0.92686 0.98288 1.20779 0.94037 0.97041 1.06326 1.20709 0.94042 0.96828 0.98850 1.20913 0.99535 0.91767 1.07813 1.17480 0.92127 0.84458 0.94785 1.55660 1.30750 1.14971 1.73571 1.19564 0.95653 0.79500 0.94126 1.21414 1.37615 1.07718 0.91976 0.91884 1.24913 0.94617 0.95112 0.98856 1.69913 1.35553 1.10523 1.36292 0.86597 0.78643 0.77655 0.84847 1.20001 1.20975 1.20011 1.05203 0.74332 0.74334 0.76323 1.93584 1.85928 1.56976 1.58728 1.93588 1.85068 1.34995 1.79984 1.30709 1.09297 1.12909 1.22697 1.20893 0.90617 1.02904 0.97436 1.22212 0.90889 1.03128 1.00022 1.23100 1.03988 0.93723 1.00938 1.23016 0.96083 1.01084 1.01878 1.20863 0.92344 0.98466 1.04519 0.91473 0.91891 0.91363 0.86729 0.86281 0.86367 0.93250 0.91943 0.92282 0.83419 0.85198 0.90311 0.90309 0.87282 0.88436 0.88726 0.88802 0.88689 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 36.01 0.36 -1.06 16 2 C -0.06 -1.01 5.88 -104.65 -0.62 -1.62 16 3 C -0.16 -2.40 9.70 -39.54 -0.38 -2.78 16 4 C -0.09 -1.31 10.04 -39.61 -0.40 -1.70 16 5 C -0.18 -3.16 8.42 -39.38 -0.33 -3.49 16 6 C 0.21 4.18 6.05 -83.79 -0.51 3.67 16 7 N -0.93 -19.58 2.91 -59.81 -0.17 -19.76 16 8 C 0.23 5.68 5.16 -5.19 -0.03 5.65 16 9 C -0.55 -14.09 9.36 -34.44 -0.32 -14.41 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 13 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 S 2.60 50.10 4.79 -107.50 -0.51 49.58 16 18 O -0.96 -19.09 15.15 -57.54 -0.87 -19.97 16 19 O -0.95 -21.15 16.53 -57.54 -0.95 -22.10 16 20 C -0.63 -9.64 6.00 37.16 0.22 -9.42 16 21 C -0.08 -1.06 5.50 -26.73 -0.15 -1.20 16 22 C -0.14 -1.69 5.73 -90.62 -0.52 -2.21 16 23 C -0.18 -1.98 10.18 -26.69 -0.27 -2.25 16 24 C -0.18 -1.82 10.25 -26.69 -0.27 -2.09 16 25 C -0.14 -2.66 9.01 -39.38 -0.35 -3.02 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.92 5.13 -52.49 -0.27 1.65 16 32 H 0.05 1.24 6.03 -51.93 -0.31 0.93 16 33 H 0.06 1.65 6.82 -51.93 -0.35 1.30 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.15 2.40 8.14 -51.92 -0.42 1.98 16 36 H 0.13 1.75 7.20 -51.92 -0.37 1.37 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.02 7.88 -51.92 -0.41 0.62 16 39 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 40 H 0.10 1.06 8.03 -51.93 -0.42 0.64 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.13 2.62 6.20 -52.48 -0.33 2.29 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -31.06 372.89 -11.49 -42.55 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.65 Total: 6.81 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -3.66 Total: -34.20 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.56 Total: -43.65 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.82 Total: -42.07 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 50.10 SS G_CDS: -0.51 Total: 49.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.06 -11.49 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770634631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.343 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds