Wall clock time and date at job start Tue Mar 31 2020 14:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38311 * 119.96112 * 2 1 4 4 C 1.38266 * 120.14696 * 179.97438 * 3 2 1 5 5 C 1.38123 * 120.07513 * 359.75490 * 4 3 2 6 6 C 1.38890 * 119.92505 * 0.47604 * 5 4 3 7 7 N 1.39679 * 120.07549 * 179.79159 * 6 5 4 8 8 C 1.46499 * 119.99941 * 204.72606 * 7 6 5 9 9 C 1.50701 * 109.46992 * 85.00203 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 S 1.65593 * 119.99664 * 24.72973 * 7 6 5 18 18 O 1.42098 * 104.28235 * 26.06930 * 17 7 6 19 19 O 1.42104 * 104.27721 * 153.92844 * 17 7 6 20 20 C 1.81401 * 104.45083 * 269.99525 * 17 7 6 21 21 C 1.53004 * 109.47307 * 179.97438 * 20 17 7 22 22 C 1.52997 * 109.46930 * 180.02562 * 21 20 17 23 23 C 1.53001 * 117.49987 * 243.75000 * 22 21 20 24 24 C 1.53001 * 117.49502 * 175.09135 * 22 21 20 25 25 C 1.38078 * 119.96453 * 179.97438 * 2 1 3 26 26 H 1.08992 * 109.46908 * 270.02154 * 1 2 3 27 27 H 1.09005 * 109.46952 * 30.01583 * 1 2 3 28 28 H 1.08999 * 109.46872 * 150.01396 * 1 2 3 29 29 H 1.07996 * 119.92922 * 0.02851 * 3 2 1 30 30 H 1.08001 * 119.96200 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.04013 * 180.27326 * 5 4 3 32 32 H 1.09002 * 109.47391 * 325.00193 * 8 7 6 33 33 H 1.09001 * 109.46813 * 205.00250 * 8 7 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.47077 * 300.00574 * 20 17 7 36 36 H 1.08998 * 109.46814 * 60.00635 * 20 17 7 37 37 H 1.09000 * 109.47076 * 300.00523 * 21 20 17 38 38 H 1.09008 * 109.46574 * 60.00460 * 21 20 17 39 39 H 1.08997 * 115.55120 * 29.41898 * 22 21 20 40 40 H 1.09000 * 117.49640 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50108 * 145.02474 * 23 22 21 42 42 H 1.09006 * 117.49494 * 214.98073 * 24 22 21 43 43 H 1.09000 * 117.50203 * 359.97438 * 24 22 21 44 44 H 1.08007 * 120.03470 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0062 6 6 3.5860 -1.1953 0.0013 7 7 4.2867 -2.4036 0.0026 8 6 3.6597 -3.6146 -0.5326 9 6 3.8602 -3.6663 -2.0254 10 1 4.4010 -2.8764 -2.5253 11 6 3.3541 -4.7227 -2.7527 12 7 2.6960 -5.6848 -2.1439 13 14 3.6033 -4.7871 -4.6029 14 1 5.0570 -4.8064 -4.9062 15 1 2.9676 -6.0146 -5.1455 16 1 2.9831 -3.5913 -5.2279 17 16 5.8262 -2.4672 0.6093 18 8 5.8780 -1.4003 1.5465 19 8 5.9833 -3.8167 1.0260 20 6 6.8898 -2.1136 -0.8170 21 6 8.3558 -2.1432 -0.3799 22 6 9.2527 -1.8444 -1.5828 23 6 10.2049 -2.9489 -2.0458 24 6 10.7558 -1.7141 -1.3281 25 6 2.1967 -1.1962 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6560 2.1325 0.0005 30 1 4.1168 2.1402 0.0010 31 1 5.3565 0.0139 0.0111 32 1 2.5928 -3.6004 -0.3097 33 1 4.1150 -4.4925 -0.0742 34 1 2.3397 -6.4278 -2.6557 35 1 6.7250 -2.8658 -1.5885 36 1 6.6493 -1.1274 -1.2139 37 1 8.5202 -1.3908 0.3914 38 1 8.5966 -3.1294 0.0173 39 1 8.8146 -1.2041 -2.3484 40 1 10.1926 -3.8883 -1.4931 41 1 10.3935 -3.0350 -3.1158 42 1 11.3065 -0.9883 -1.9265 43 1 11.1055 -1.8409 -0.3036 44 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770634631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:18 Heat of formation + Delta-G solvation = -46.473647 kcal Electronic energy + Delta-G solvation = -25887.059041 eV Core-core repulsion = 22317.276319 eV Total energy + Delta-G solvation = -3569.782722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57506 -38.65568 -38.36313 -37.32469 -37.06781 -34.74513 -33.53214 -33.23711 -30.82612 -28.98897 -27.61545 -25.76637 -24.97309 -23.22813 -22.82901 -22.53443 -21.47952 -19.94989 -18.74435 -18.60612 -18.08502 -17.53030 -16.92765 -16.75139 -16.44601 -16.06985 -15.67471 -15.39990 -15.01818 -14.95177 -14.72800 -14.43769 -14.03608 -13.91102 -13.62844 -13.48955 -13.31492 -13.23412 -13.09575 -12.88600 -12.86156 -12.80460 -12.71796 -12.51252 -12.33581 -12.21487 -12.14971 -12.03879 -11.74999 -11.66325 -11.14340 -10.88743 -10.78331 -10.62830 -9.57965 -8.86435 -8.22628 -6.40054 -0.84051 0.51701 0.61292 1.39450 1.41717 1.47391 1.51929 2.36627 2.65741 2.86232 2.98688 3.05429 3.07659 3.45382 3.73403 3.77411 3.84653 4.01247 4.04893 4.14539 4.16604 4.30016 4.41677 4.48900 4.54705 4.55977 4.73722 4.79939 4.86230 4.86586 4.88513 4.96228 5.02814 5.04120 5.12741 5.19189 5.26258 5.29567 5.35613 5.55174 5.64510 5.71235 5.76988 5.86203 5.95905 6.29273 6.69848 7.30325 8.83876 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.006021 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.319237 B = 4649.399573 C = 6636.305950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.066 4.066 3 C -0.154 4.154 4 C -0.081 4.081 5 C -0.193 4.193 6 C 0.175 3.825 7 N -0.935 5.935 8 C 0.248 3.752 9 C -0.552 4.552 10 H 0.072 0.928 11 C 0.016 3.984 12 N -0.924 5.924 13 Si 0.960 3.040 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.267 1.267 17 S 2.596 3.404 18 O -0.971 6.971 19 O -0.990 6.990 20 C -0.599 4.599 21 C -0.086 4.086 22 C -0.158 4.158 23 C -0.192 4.192 24 C -0.166 4.166 25 C -0.172 4.172 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.129 0.871 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.268 0.732 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 13.940 0.075 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.067 4.067 3 C -0.173 4.173 4 C -0.099 4.099 5 C -0.214 4.214 6 C 0.079 3.921 7 N -0.758 5.758 8 C 0.126 3.874 9 C -0.590 4.590 10 H 0.090 0.910 11 C -0.184 4.184 12 N -0.563 5.563 13 Si 0.784 3.216 14 H -0.187 1.187 15 H -0.208 1.208 16 H -0.192 1.192 17 S 2.697 3.303 18 O -0.962 6.962 19 O -0.981 6.981 20 C -0.732 4.732 21 C -0.125 4.125 22 C -0.177 4.177 23 C -0.229 4.229 24 C -0.203 4.203 25 C -0.194 4.194 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.146 0.854 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.523 13.441 0.994 15.435 hybrid contribution -0.194 -0.997 -1.399 1.729 sum 7.329 12.444 -0.405 14.448 Atomic orbital electron populations 1.20824 0.89300 1.03409 1.03103 1.20102 0.97441 0.92151 0.97008 1.21259 0.94186 0.97845 1.04023 1.21224 0.94579 0.97351 0.96751 1.21177 1.00297 0.91713 1.08239 1.17834 0.92645 0.84658 0.97010 1.55473 1.31717 1.14580 1.74056 1.19052 0.94406 0.80156 0.93832 1.21704 1.37096 1.07761 0.92467 0.90979 1.25803 0.94337 0.94748 1.03552 1.70050 1.36824 1.11290 1.38106 0.85573 0.79112 0.77738 0.79156 1.18737 1.20838 1.19239 1.05256 0.74299 0.73320 0.77446 1.93552 1.86026 1.56480 1.60128 1.93528 1.85590 1.37295 1.81653 1.30457 1.09464 1.13996 1.19281 1.21049 0.89089 1.03488 0.98891 1.22198 0.91744 1.04145 0.99612 1.23204 1.04158 0.93876 1.01643 1.23131 0.94395 1.00356 1.02451 1.20916 0.92556 0.98942 1.06983 0.90057 0.89141 0.92492 0.82733 0.82355 0.85364 0.95308 0.95135 0.92256 0.84120 0.82608 0.88699 0.90685 0.86578 0.88983 0.87896 0.87003 0.87988 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 10.01 71.24 0.71 -1.91 16 2 C -0.07 -2.06 5.88 -19.88 -0.12 -2.17 16 3 C -0.15 -4.03 9.70 22.29 0.22 -3.81 16 4 C -0.08 -2.20 10.04 22.25 0.22 -1.97 16 5 C -0.19 -6.57 8.42 22.40 0.19 -6.38 16 6 C 0.18 7.16 6.05 38.21 0.23 7.39 16 7 N -0.94 -41.55 2.91 -343.13 -1.00 -42.55 16 8 C 0.25 12.99 5.16 85.63 0.44 13.43 16 9 C -0.55 -29.28 9.36 25.60 0.24 -29.04 16 10 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 11 C 0.02 0.87 5.46 84.66 0.46 1.33 16 12 N -0.92 -53.53 13.29 21.45 0.28 -53.25 16 13 Si 0.96 41.94 29.54 68.60 2.03 43.97 16 14 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 17 S 2.60 103.33 4.79 -56.49 -0.27 103.06 16 18 O -0.97 -39.03 15.15 -127.65 -1.93 -40.97 16 19 O -0.99 -47.12 16.53 -127.65 -2.11 -49.23 16 20 C -0.60 -17.97 6.00 71.98 0.43 -17.54 16 21 C -0.09 -2.16 5.50 30.59 0.17 -1.99 16 22 C -0.16 -3.33 5.73 -10.79 -0.06 -3.40 16 23 C -0.19 -3.83 10.18 30.62 0.31 -3.52 16 24 C -0.17 -2.80 10.25 30.62 0.31 -2.49 16 25 C -0.17 -6.81 9.01 22.40 0.20 -6.61 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.66 8.09 -2.38 -0.02 1.64 16 28 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.13 3.96 5.13 -2.91 -0.01 3.94 16 32 H 0.03 1.60 6.03 -2.39 -0.01 1.58 16 33 H 0.03 1.77 6.82 -2.39 -0.02 1.75 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 36 H 0.16 3.87 7.20 -2.39 -0.02 3.85 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 1.93 7.88 -2.38 -0.02 1.91 16 39 H 0.12 2.29 8.08 -2.39 -0.02 2.28 16 40 H 0.09 1.92 8.03 -2.39 -0.02 1.90 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 4.65 6.20 -2.91 -0.02 4.63 16 Total: -1.00 -70.55 372.89 1.95 -68.60 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.99 Total: 29.05 kcal Atomic # 6 Polarization: -62.66 SS G_CDS: 3.97 Total: -58.69 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -0.71 Total: -95.80 kcal Atomic # 8 Polarization: -86.15 SS G_CDS: -4.04 Total: -90.19 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 103.33 SS G_CDS: -0.27 Total: 103.06 kcal Total: -70.55 1.95 -68.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770634631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.127 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds