Wall clock time and date at job start Tue Mar 31 2020 13:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 112.84479 * 2 1 4 4 C 1.42897 * 114.00285 * 50.32895 * 3 2 1 5 5 C 1.50697 * 109.47369 * 179.97438 * 4 3 2 6 6 O 1.21296 * 119.99780 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00467 * 179.97438 * 5 4 3 8 8 C 1.40083 * 120.00110 * 184.36840 * 7 5 4 9 9 C 1.38707 * 120.07974 * 325.41486 * 8 7 5 10 10 C 1.38192 * 120.02335 * 179.69592 * 9 8 7 11 11 C 1.38553 * 120.17227 * 0.60124 * 10 9 8 12 12 F 1.35097 * 119.92313 * 179.70118 * 11 10 9 13 13 C 1.38349 * 120.15397 * 359.67326 * 11 10 9 14 14 C 1.38741 * 119.97793 * 0.02625 * 13 11 10 15 15 O 1.35768 * 120.08732 * 179.97438 * 14 13 11 16 16 C 1.34809 * 117.00283 * 5.43104 * 15 14 13 17 17 H 1.08007 * 119.99560 * 354.95193 * 16 15 14 18 18 C 1.38637 * 120.00135 * 174.95678 * 16 15 14 19 19 N 1.31567 * 119.99869 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99897 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46786 * 90.00346 * 20 18 16 22 22 H 1.48498 * 109.47093 * 210.00062 * 20 18 16 23 23 H 1.48495 * 109.47674 * 330.00517 * 20 18 16 24 24 C 1.53780 * 113.61457 * 131.18944 * 2 1 3 25 25 C 1.53955 * 87.01434 * 89.23582 * 24 2 1 26 26 C 1.53774 * 87.11641 * 25.36133 * 25 24 2 27 27 H 1.09004 * 109.47024 * 69.67158 * 1 2 3 28 28 H 1.09000 * 109.46927 * 189.66813 * 1 2 3 29 29 H 1.08993 * 109.47480 * 309.66671 * 1 2 3 30 30 H 1.08999 * 109.46806 * 60.00006 * 4 3 2 31 31 H 1.09000 * 109.47290 * 300.00386 * 4 3 2 32 32 H 0.96999 * 119.99139 * 4.10162 * 7 5 4 33 33 H 1.08004 * 119.99051 * 359.97358 * 9 8 7 34 34 H 1.07997 * 119.91558 * 180.27810 * 10 9 8 35 35 H 1.07999 * 120.00748 * 180.02562 * 13 11 10 36 36 H 0.97002 * 120.00048 * 179.97438 * 19 18 16 37 37 H 1.08998 * 113.61193 * 203.74782 * 24 2 1 38 38 H 1.08997 * 113.61626 * 334.65454 * 24 2 1 39 39 H 1.09003 * 113.53368 * 270.80647 * 25 24 2 40 40 H 1.09002 * 113.74510 * 139.94681 * 25 24 2 41 41 H 1.08994 * 113.61893 * 220.09255 * 26 25 24 42 42 H 1.09004 * 113.61839 * 89.18478 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3170 0.0000 4 6 1.5425 2.1762 1.0048 5 6 2.1962 3.5309 0.9136 6 8 3.0429 3.7402 0.0707 7 7 1.8394 4.5103 1.7680 8 6 2.3793 5.7951 1.6256 9 6 3.6847 5.9557 1.1851 10 6 4.2141 7.2238 1.0391 11 6 3.4481 8.3375 1.3436 12 9 3.9727 9.5747 1.2048 13 6 2.1471 8.1855 1.7890 14 6 1.6072 6.9155 1.9320 15 8 0.3309 6.7638 2.3694 16 6 -0.3952 7.8867 2.5400 17 1 0.0674 8.8539 2.4095 18 6 -1.7356 7.8000 2.8832 19 7 -2.4443 8.8960 3.0492 20 14 -2.5357 6.1272 3.1084 21 1 -2.4016 5.7010 4.5247 22 1 -3.9746 6.2147 2.7520 23 1 -1.8670 5.1360 2.2278 24 6 2.1460 -0.9279 1.0603 25 6 2.0951 -2.0418 -0.0012 26 6 2.1461 -0.9280 -1.0602 27 1 -0.3633 0.3570 -0.9637 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3634 0.6559 0.7910 30 1 1.7308 1.7479 1.9893 31 1 0.4681 2.2798 0.8531 32 1 1.2057 4.3265 2.4790 33 1 4.2862 5.0896 0.9518 34 1 5.2292 7.3470 0.6917 35 1 1.5521 9.0553 2.0253 36 1 -3.3823 8.8353 3.2890 37 1 3.1585 -0.6475 1.3507 38 1 1.4940 -1.1078 1.9150 39 1 1.1596 -2.6013 -0.0005 40 1 2.9739 -2.6868 -0.0031 41 1 1.4941 -1.1079 -1.9149 42 1 3.1586 -0.6476 -1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773071037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:13 Heat of formation + Delta-G solvation = -97.906035 kcal Electronic energy + Delta-G solvation = -27038.078694 eV Core-core repulsion = 22899.852520 eV Total energy + Delta-G solvation = -4138.226174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.31823 -40.47207 -39.92123 -38.71115 -36.62096 -35.85884 -34.24454 -32.54824 -29.86380 -29.42304 -29.34346 -27.38767 -25.97896 -25.45423 -23.57765 -22.51333 -21.64032 -20.26664 -19.11547 -18.38913 -18.07006 -17.50203 -17.06307 -16.48602 -16.07362 -15.48508 -15.38848 -15.25770 -15.06555 -14.96192 -14.25562 -14.12762 -13.93324 -13.73166 -13.51707 -13.45624 -13.23925 -12.69010 -12.51680 -12.45661 -12.34773 -12.16636 -11.90668 -11.58911 -11.47939 -11.40642 -11.05518 -10.99917 -10.82798 -10.51725 -10.49594 -9.83646 -9.77937 -9.66801 -9.41883 -9.04398 -8.02880 -7.31430 -6.58039 -4.25654 1.66260 1.97726 2.70468 2.87947 3.07165 3.09959 3.19117 3.86346 4.04997 4.18233 4.23440 4.26318 4.46332 4.47557 4.49337 4.80601 4.90607 4.94850 4.95949 5.03284 5.11611 5.16051 5.37767 5.43131 5.47678 5.50406 5.56451 5.65523 5.68042 5.73109 5.87078 5.90748 6.03151 6.06305 6.36728 6.67153 6.77370 6.81651 6.89004 7.01899 7.40985 7.58495 7.68878 7.83253 8.35019 8.74639 9.28930 10.49112 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.003820 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.195282 B = 7328.834961 C = 9640.388242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 O -0.343 6.343 4 C 0.043 3.957 5 C 0.511 3.489 6 O -0.511 6.511 7 N -0.652 5.652 8 C 0.059 3.941 9 C -0.050 4.050 10 C -0.222 4.222 11 C 0.132 3.868 12 F -0.148 7.148 13 C -0.246 4.246 14 C 0.167 3.833 15 O -0.208 6.208 16 C -0.392 4.392 17 H 0.109 0.891 18 C 0.066 3.934 19 N -0.871 5.871 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.260 1.260 24 C -0.163 4.163 25 C -0.139 4.139 26 C -0.119 4.119 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.282 0.718 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -18.550 -2.189 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 O -0.261 6.261 4 C -0.037 4.037 5 C 0.297 3.703 6 O -0.386 6.386 7 N -0.299 5.299 8 C -0.034 4.034 9 C -0.070 4.070 10 C -0.242 4.242 11 C 0.112 3.888 12 F -0.127 7.127 13 C -0.267 4.267 14 C 0.113 3.887 15 O -0.113 6.113 16 C -0.467 4.467 17 H 0.127 0.873 18 C -0.138 4.138 19 N -0.508 5.508 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.184 1.184 24 C -0.200 4.200 25 C -0.177 4.177 26 C -0.156 4.156 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.247 0.753 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.146 -18.442 -2.837 19.646 hybrid contribution -1.050 -0.226 0.694 1.278 sum 5.097 -18.668 -2.143 19.470 Atomic orbital electron populations 1.22137 0.93687 1.03107 1.03384 1.23122 0.93109 0.81712 0.97792 1.88093 1.62756 1.21629 1.53601 1.22136 0.98585 0.89400 0.93572 1.20267 0.83327 0.85650 0.81074 1.90691 1.31179 1.81536 1.35174 1.42982 1.46455 1.08121 1.32292 1.16833 0.92852 0.81841 1.11918 1.20667 0.92121 0.97270 0.96976 1.20559 1.01006 0.91090 1.11517 1.17479 0.92167 0.79136 1.00031 1.91430 1.86769 1.40857 1.93609 1.20986 0.95375 0.98702 1.11641 1.18490 0.85246 0.91121 0.93875 1.83495 1.18999 1.35513 1.73279 1.20770 0.92525 0.84558 1.48838 0.87332 1.24472 0.94851 0.98884 0.95611 1.69640 1.09158 1.27535 1.44425 0.86203 0.78491 0.83039 0.79284 1.19661 1.20585 1.18393 1.23640 1.02276 0.96695 0.97427 1.22714 1.02461 0.96064 0.96432 1.23057 1.02345 0.93694 0.96538 0.91117 0.90908 0.91487 0.90245 0.89756 0.75342 0.83922 0.85632 0.83272 0.90769 0.89132 0.91148 0.89947 0.90733 0.90684 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.80 37.16 0.33 -1.07 16 2 C 0.08 0.82 1.39 -89.81 -0.12 0.69 16 3 O -0.34 -4.66 9.83 -55.14 -0.54 -5.20 16 4 C 0.04 0.53 5.79 36.00 0.21 0.74 16 5 C 0.51 8.31 7.75 -10.99 -0.09 8.22 16 6 O -0.51 -10.02 13.92 -14.37 -0.20 -10.22 16 7 N -0.65 -10.87 5.20 -9.72 -0.05 -10.92 16 8 C 0.06 1.15 6.33 -83.45 -0.53 0.62 16 9 C -0.05 -0.92 8.69 -39.43 -0.34 -1.26 16 10 C -0.22 -3.97 10.02 -39.48 -0.40 -4.37 16 11 C 0.13 2.58 7.29 -39.42 -0.29 2.29 16 12 F -0.15 -2.82 17.26 2.25 0.04 -2.78 16 13 C -0.25 -5.28 9.14 -39.35 -0.36 -5.64 16 14 C 0.17 3.64 6.66 -38.94 -0.26 3.38 16 15 O -0.21 -4.95 8.13 0.05 0.00 -4.95 16 16 C -0.39 -10.32 9.95 30.88 0.31 -10.01 16 17 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 18 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 19 N -0.87 -23.95 13.96 55.48 0.77 -23.18 16 20 Si 0.90 19.68 28.62 -169.99 -4.86 14.82 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 24 C -0.16 -1.34 7.33 -25.83 -0.19 -1.53 16 25 C -0.14 -0.97 7.74 -25.83 -0.20 -1.16 16 26 C -0.12 -1.03 7.50 -25.92 -0.19 -1.23 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.48 7.34 -51.93 -0.38 0.10 16 29 H 0.07 0.55 6.27 -51.93 -0.33 0.22 16 30 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 31 H 0.08 0.93 6.39 -51.93 -0.33 0.60 16 32 H 0.41 6.02 8.55 -40.82 -0.35 5.67 16 33 H 0.14 2.54 6.19 -52.48 -0.33 2.22 16 34 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.15 3.35 5.64 -52.49 -0.30 3.05 16 36 H 0.28 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.08 0.48 7.64 -51.93 -0.40 0.08 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -30.20 354.77 -6.92 -37.11 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.20 Total: 8.64 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.22 Total: -8.67 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.72 Total: -34.10 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.74 Total: -20.37 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.86 Total: 14.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.20 -6.92 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773071037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.791 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds