Wall clock time and date at job start Tue Mar 31 2020 13:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 112.84479 * 2 1 4 4 C 1.42897 * 114.00285 * 50.32895 * 3 2 1 5 5 C 1.50697 * 109.47369 * 179.97438 * 4 3 2 6 6 O 1.21296 * 119.99780 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00467 * 179.97438 * 5 4 3 8 8 C 1.40083 * 120.00110 * 184.36840 * 7 5 4 9 9 C 1.38707 * 120.07974 * 325.41486 * 8 7 5 10 10 C 1.38192 * 120.02335 * 179.69592 * 9 8 7 11 11 C 1.38553 * 120.17227 * 0.60124 * 10 9 8 12 12 F 1.35097 * 119.92313 * 179.70118 * 11 10 9 13 13 C 1.38349 * 120.15397 * 359.67326 * 11 10 9 14 14 C 1.38741 * 119.97793 * 0.02625 * 13 11 10 15 15 O 1.35768 * 120.08732 * 179.97438 * 14 13 11 16 16 C 1.34809 * 117.00283 * 5.43104 * 15 14 13 17 17 H 1.08007 * 119.99560 * 354.95193 * 16 15 14 18 18 C 1.38637 * 120.00135 * 174.95678 * 16 15 14 19 19 N 1.31567 * 119.99869 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99897 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46786 * 90.00346 * 20 18 16 22 22 H 1.48498 * 109.47093 * 210.00062 * 20 18 16 23 23 H 1.48495 * 109.47674 * 330.00517 * 20 18 16 24 24 C 1.53780 * 113.61457 * 131.18944 * 2 1 3 25 25 C 1.53955 * 87.01434 * 89.23582 * 24 2 1 26 26 C 1.53774 * 87.11641 * 25.36133 * 25 24 2 27 27 H 1.09004 * 109.47024 * 69.67158 * 1 2 3 28 28 H 1.09000 * 109.46927 * 189.66813 * 1 2 3 29 29 H 1.08993 * 109.47480 * 309.66671 * 1 2 3 30 30 H 1.08999 * 109.46806 * 60.00006 * 4 3 2 31 31 H 1.09000 * 109.47290 * 300.00386 * 4 3 2 32 32 H 0.96999 * 119.99139 * 4.10162 * 7 5 4 33 33 H 1.08004 * 119.99051 * 359.97358 * 9 8 7 34 34 H 1.07997 * 119.91558 * 180.27810 * 10 9 8 35 35 H 1.07999 * 120.00748 * 180.02562 * 13 11 10 36 36 H 0.97002 * 120.00048 * 179.97438 * 19 18 16 37 37 H 1.08998 * 113.61193 * 203.74782 * 24 2 1 38 38 H 1.08997 * 113.61626 * 334.65454 * 24 2 1 39 39 H 1.09003 * 113.53368 * 270.80647 * 25 24 2 40 40 H 1.09002 * 113.74510 * 139.94681 * 25 24 2 41 41 H 1.08994 * 113.61893 * 220.09255 * 26 25 24 42 42 H 1.09004 * 113.61839 * 89.18478 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3170 0.0000 4 6 1.5425 2.1762 1.0048 5 6 2.1962 3.5309 0.9136 6 8 3.0429 3.7402 0.0707 7 7 1.8394 4.5103 1.7680 8 6 2.3793 5.7951 1.6256 9 6 3.6847 5.9557 1.1851 10 6 4.2141 7.2238 1.0391 11 6 3.4481 8.3375 1.3436 12 9 3.9727 9.5747 1.2048 13 6 2.1471 8.1855 1.7890 14 6 1.6072 6.9155 1.9320 15 8 0.3309 6.7638 2.3694 16 6 -0.3952 7.8867 2.5400 17 1 0.0674 8.8539 2.4095 18 6 -1.7356 7.8000 2.8832 19 7 -2.4443 8.8960 3.0492 20 14 -2.5357 6.1272 3.1084 21 1 -2.4016 5.7010 4.5247 22 1 -3.9746 6.2147 2.7520 23 1 -1.8670 5.1360 2.2278 24 6 2.1460 -0.9279 1.0603 25 6 2.0951 -2.0418 -0.0012 26 6 2.1461 -0.9280 -1.0602 27 1 -0.3633 0.3570 -0.9637 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3634 0.6559 0.7910 30 1 1.7308 1.7479 1.9893 31 1 0.4681 2.2798 0.8531 32 1 1.2057 4.3265 2.4790 33 1 4.2862 5.0896 0.9518 34 1 5.2292 7.3470 0.6917 35 1 1.5521 9.0553 2.0253 36 1 -3.3823 8.8353 3.2890 37 1 3.1585 -0.6475 1.3507 38 1 1.4940 -1.1078 1.9150 39 1 1.1596 -2.6013 -0.0005 40 1 2.9739 -2.6868 -0.0031 41 1 1.4941 -1.1079 -1.9149 42 1 3.1586 -0.6476 -1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773071037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:13 Heat of formation + Delta-G solvation = -115.460943 kcal Electronic energy + Delta-G solvation = -27038.839932 eV Core-core repulsion = 22899.852520 eV Total energy + Delta-G solvation = -4138.987412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.89250 -41.79976 -40.89956 -40.15681 -38.18799 -36.79471 -35.68437 -34.48824 -31.39347 -30.85073 -30.01494 -28.64201 -27.31363 -26.61473 -24.45889 -23.88673 -23.20192 -21.62915 -20.19536 -19.82286 -19.71595 -18.59038 -18.41960 -17.67333 -17.20864 -17.12991 -16.71435 -16.59769 -16.21674 -15.94935 -15.88653 -15.64089 -15.32597 -15.16671 -14.96951 -14.51895 -14.39122 -14.26116 -13.87503 -13.62733 -13.36517 -13.13471 -13.05009 -12.89379 -12.61790 -12.43800 -12.19580 -12.16794 -12.10758 -11.69407 -11.67048 -11.28193 -11.14544 -10.95202 -10.80603 -10.44583 -9.67387 -8.90797 -8.52449 -6.27627 0.08002 0.35862 1.34000 1.39358 1.43593 1.52468 1.70649 2.26687 2.56531 2.73087 2.92046 3.00845 3.33160 3.50103 3.62653 3.67968 3.85655 3.88093 3.91103 4.11119 4.13047 4.21739 4.25555 4.40673 4.51299 4.60176 4.75047 4.81794 4.87059 4.88009 5.03194 5.07183 5.08702 5.13129 5.13876 5.23709 5.29023 5.39267 5.46535 5.57471 5.78371 6.01974 6.16116 6.41566 6.78722 7.04484 7.39964 8.58377 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.003820 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.195282 B = 7328.834961 C = 9640.388242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 O -0.374 6.374 4 C 0.049 3.951 5 C 0.510 3.490 6 O -0.547 6.547 7 N -0.650 5.650 8 C 0.070 3.930 9 C -0.051 4.051 10 C -0.195 4.195 11 C 0.122 3.878 12 F -0.145 7.145 13 C -0.258 4.258 14 C 0.144 3.856 15 O -0.217 6.217 16 C -0.404 4.404 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.971 3.029 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.246 1.246 24 C -0.160 4.160 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.422 0.578 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.286 0.714 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.262 -21.990 -2.104 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 O -0.293 6.293 4 C -0.030 4.030 5 C 0.299 3.701 6 O -0.424 6.424 7 N -0.297 5.297 8 C -0.025 4.025 9 C -0.071 4.071 10 C -0.215 4.215 11 C 0.102 3.898 12 F -0.124 7.124 13 C -0.279 4.279 14 C 0.092 3.908 15 O -0.124 6.124 16 C -0.480 4.480 17 H 0.097 0.903 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.791 3.209 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.170 1.170 24 C -0.198 4.198 25 C -0.165 4.165 26 C -0.164 4.164 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.259 0.741 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.656 -21.903 -2.748 23.056 hybrid contribution -0.924 0.854 0.550 1.373 sum 5.731 -21.049 -2.198 21.926 Atomic orbital electron populations 1.22158 0.92456 1.04501 1.03108 1.23486 0.94141 0.80287 0.99059 1.88056 1.63784 1.23279 1.54230 1.22167 0.98711 0.87098 0.95048 1.21030 0.82547 0.86680 0.79855 1.90665 1.32907 1.82312 1.36528 1.43060 1.46557 1.07154 1.32904 1.16998 0.92871 0.82542 1.10055 1.20900 0.91794 0.97898 0.96531 1.20945 1.02018 0.90053 1.08443 1.17513 0.91704 0.79903 1.00659 1.91436 1.86543 1.40790 1.93613 1.20998 0.96330 0.98284 1.12251 1.18790 0.84984 0.92041 0.95004 1.83445 1.19708 1.33912 1.75303 1.20655 0.93261 0.84474 1.49593 0.90341 1.25369 0.95176 1.03023 0.95124 1.69743 1.09748 1.29940 1.46453 0.85218 0.77426 0.78173 0.80048 1.18239 1.20064 1.16957 1.23611 1.01830 0.96515 0.97842 1.22713 1.03710 0.95460 0.94580 1.23123 1.01592 0.94478 0.97242 0.91918 0.88841 0.91109 0.87033 0.88088 0.74057 0.82656 0.82200 0.85401 0.90394 0.90174 0.89677 0.88220 0.90014 0.90071 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 8.80 71.98 0.63 -1.65 16 2 C 0.07 1.21 1.39 -10.27 -0.01 1.19 16 3 O -0.37 -9.48 9.83 -129.94 -1.28 -10.76 16 4 C 0.05 1.08 5.79 71.24 0.41 1.49 16 5 C 0.51 15.58 7.75 87.66 0.68 16.26 16 6 O -0.55 -20.64 13.92 15.96 0.22 -20.42 16 7 N -0.65 -20.43 5.20 -303.04 -1.57 -22.01 16 8 C 0.07 2.64 6.33 38.23 0.24 2.88 16 9 C -0.05 -1.77 8.69 22.37 0.19 -1.58 16 10 C -0.19 -6.53 10.02 22.33 0.22 -6.30 16 11 C 0.12 4.71 7.29 22.37 0.16 4.87 16 12 F -0.15 -5.45 17.26 44.97 0.78 -4.67 16 13 C -0.26 -11.39 9.14 22.42 0.20 -11.18 16 14 C 0.14 6.34 6.66 22.69 0.15 6.49 16 15 O -0.22 -10.48 8.13 -22.73 -0.18 -10.66 16 16 C -0.40 -22.16 9.95 67.92 0.68 -21.48 16 17 H 0.08 4.64 5.44 -2.91 -0.02 4.62 16 18 C 0.01 0.67 5.49 84.83 0.47 1.14 16 19 N -0.92 -52.45 13.96 21.61 0.30 -52.14 16 20 Si 0.97 40.23 28.62 68.60 1.96 42.20 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 24 C -0.16 -2.18 7.33 31.18 0.23 -1.95 16 25 C -0.13 -1.39 7.74 31.18 0.24 -1.15 16 26 C -0.13 -1.99 7.50 31.12 0.23 -1.76 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 0.88 7.34 -2.39 -0.02 0.87 16 29 H 0.07 0.91 6.27 -2.39 -0.01 0.90 16 30 H 0.11 1.74 8.06 -2.39 -0.02 1.72 16 31 H 0.10 1.91 6.39 -2.39 -0.02 1.89 16 32 H 0.42 11.41 8.55 -92.71 -0.79 10.62 16 33 H 0.16 5.14 6.19 -2.91 -0.02 5.12 16 34 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.13 6.17 5.64 -2.91 -0.02 6.16 16 36 H 0.29 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.10 0.77 7.64 -2.39 -0.02 0.75 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -67.49 354.77 5.24 -62.25 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.28 Total: 28.96 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.74 Total: -12.74 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.27 Total: -74.15 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.24 Total: -41.84 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.78 Total: -4.67 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.96 Total: 42.20 kcal Total: -67.49 5.24 -62.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773071037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.216 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds