Wall clock time and date at job start Tue Mar 31 2020 13:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38296 * 120.08286 * 2 1 4 4 C 1.37837 * 120.22394 * 180.02562 * 3 2 1 5 5 C 1.39646 * 120.28316 * 359.79283 * 4 3 2 6 6 C 1.38581 * 119.03838 * 0.44934 * 5 4 3 7 7 C 1.38177 * 120.46917 * 359.52809 * 6 5 4 8 8 C 1.51212 * 108.55468 * 179.72793 * 6 5 4 9 9 C 1.53747 * 104.56971 * 359.77264 * 8 6 5 10 10 N 1.39759 * 129.33409 * 179.65833 * 5 4 3 11 11 C 1.34775 * 124.96721 * 0.61084 * 10 5 4 12 12 O 1.21606 * 120.00311 * 354.66988 * 11 10 5 13 13 C 1.47508 * 119.99689 * 174.66367 * 11 10 5 14 14 C 1.39679 * 120.19932 * 314.10553 * 13 11 10 15 15 C 1.37823 * 119.91462 * 180.02562 * 14 13 11 16 16 C 1.38573 * 120.32997 * 359.97438 * 15 14 13 17 17 C 1.38030 * 120.40337 * 0.02562 * 16 15 14 18 18 C 1.38832 * 120.07209 * 359.97438 * 17 16 15 19 19 O 1.35526 * 120.16216 * 180.02562 * 18 17 16 20 20 C 1.34813 * 116.99907 * 354.71800 * 19 18 17 21 21 H 1.08005 * 119.99791 * 5.08990 * 20 19 18 22 22 C 1.38690 * 119.99907 * 185.09201 * 20 19 18 23 23 N 1.31521 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00280 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46816 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47250 * 119.99605 * 24 22 20 27 27 H 1.48498 * 109.47124 * 239.99963 * 24 22 20 28 28 H 1.09004 * 109.46378 * 269.97661 * 1 2 3 29 29 H 1.09004 * 109.46931 * 29.97362 * 1 2 3 30 30 H 1.09000 * 109.47058 * 149.97979 * 1 2 3 31 31 H 1.08003 * 119.88849 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.85530 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.92271 * 180.26993 * 7 6 5 34 34 H 1.09002 * 110.41745 * 241.00231 * 8 6 5 35 35 H 1.08996 * 110.41893 * 118.54717 * 8 6 5 36 36 H 1.09000 * 110.30020 * 241.07440 * 9 8 6 37 37 H 1.08997 * 110.38298 * 118.96755 * 9 8 6 38 38 H 1.08001 * 120.04034 * 0.04196 * 14 13 11 39 39 H 1.08005 * 119.83474 * 180.27134 * 15 14 13 40 40 H 1.08000 * 119.80055 * 179.97438 * 16 15 14 41 41 H 1.07990 * 119.96615 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2003 1.1967 0.0000 4 6 3.5787 1.2001 -0.0005 5 6 4.2858 -0.0041 0.0033 6 6 3.5817 -1.1977 -0.0019 7 6 2.2000 -1.1961 -0.0009 8 6 4.5720 -2.3405 -0.0031 9 6 5.9498 -1.6583 -0.0038 10 7 5.6665 -0.2206 -0.0029 11 6 6.6007 0.7509 -0.0026 12 8 6.2660 1.9164 -0.0943 13 6 8.0292 0.4004 0.1093 14 6 8.4520 -0.5289 1.0626 15 6 9.7882 -0.8517 1.1623 16 6 10.7160 -0.2592 0.3206 17 6 10.3129 0.6608 -0.6262 18 6 8.9711 0.9983 -0.7412 19 8 8.5732 1.9009 -1.6706 20 6 9.5407 2.5168 -2.3791 21 1 10.5725 2.2238 -2.2523 22 6 9.2111 3.5267 -3.2707 23 7 7.9547 3.8832 -3.4253 24 14 10.5516 4.3797 -4.2530 25 1 11.8712 3.7980 -3.8986 26 1 10.2996 4.1889 -5.7039 27 1 10.5497 5.8307 -3.9368 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6598 2.1317 0.0004 32 1 4.1140 2.1381 -0.0001 33 1 1.6601 -2.1315 -0.0006 34 1 4.4488 -2.9495 -0.8986 35 1 4.4500 -2.9502 0.8921 36 1 6.5075 -1.9333 -0.8990 37 1 6.5102 -1.9337 0.8896 38 1 7.7328 -0.9939 1.7205 39 1 10.1132 -1.5736 1.8970 40 1 11.7609 -0.5181 0.4065 41 1 11.0418 1.1179 -1.2788 42 1 7.7241 4.5893 -4.0492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773758391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:52 Heat of formation + Delta-G solvation = 1.312042 kcal Electronic energy + Delta-G solvation = -26631.893751 eV Core-core repulsion = 22928.739221 eV Total energy + Delta-G solvation = -3703.154531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89516 -39.30395 -37.91463 -36.46759 -36.29824 -32.42115 -32.09879 -31.90706 -30.33975 -29.10662 -28.85808 -26.56943 -25.45693 -23.89299 -22.73889 -22.18882 -21.54552 -20.47393 -19.45844 -18.14944 -17.35432 -16.56009 -16.19147 -15.93108 -15.04950 -14.84301 -14.66501 -14.62202 -14.18918 -13.95864 -13.77448 -13.65854 -13.55903 -13.29169 -13.06023 -12.69457 -12.49107 -12.42743 -12.05149 -11.95897 -11.77592 -11.70426 -11.46138 -11.37004 -11.16663 -10.98325 -10.78488 -10.71783 -10.48308 -9.73684 -9.67226 -9.13972 -8.94472 -8.61053 -8.37465 -7.45610 -7.34819 -6.52188 -4.12866 1.41938 1.57817 1.77289 2.21805 3.07776 3.09350 3.13223 3.15097 3.37449 3.87906 3.98256 4.42023 4.49130 4.64844 4.92082 4.99729 5.05954 5.12399 5.13745 5.19201 5.31927 5.42616 5.44775 5.54978 5.60576 5.63749 5.72296 5.79868 5.88352 5.91476 5.94789 6.01097 6.06717 6.20373 6.45201 6.49360 6.57035 6.65857 6.74528 6.80316 6.87360 6.97190 7.15813 7.21756 7.32362 7.59171 7.75086 7.88161 8.66928 8.89134 9.55799 10.62882 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.004054 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.647998 B = 6904.912807 C = 8666.539894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.130 4.130 5 C 0.160 3.840 6 C -0.146 4.146 7 C -0.080 4.080 8 C -0.083 4.083 9 C 0.102 3.898 10 N -0.558 5.558 11 C 0.581 3.419 12 O -0.488 6.488 13 C -0.221 4.221 14 C -0.041 4.041 15 C -0.224 4.224 16 C -0.051 4.051 17 C -0.234 4.234 18 C 0.190 3.810 19 O -0.145 6.145 20 C -0.401 4.401 21 H 0.096 0.904 22 C 0.044 3.956 23 N -0.840 5.840 24 Si 0.943 3.057 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -12.318 6.970 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.151 4.151 5 C 0.064 3.936 6 C -0.150 4.150 7 C -0.099 4.099 8 C -0.120 4.120 9 C -0.021 4.021 10 N -0.282 5.282 11 C 0.373 3.627 12 O -0.360 6.360 13 C -0.226 4.226 14 C -0.059 4.059 15 C -0.243 4.243 16 C -0.070 4.070 17 C -0.253 4.253 18 C 0.132 3.868 19 O -0.045 6.045 20 C -0.476 4.476 21 H 0.114 0.886 22 C -0.163 4.163 23 N -0.472 5.472 24 Si 0.767 3.233 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.311 -11.310 6.663 15.026 hybrid contribution 0.893 0.389 -0.521 1.105 sum -6.418 -10.921 6.141 14.078 Atomic orbital electron populations 1.20659 0.91287 1.02353 1.01770 1.19669 0.95754 0.92887 1.04204 1.20781 0.93164 0.97573 0.99531 1.21037 0.93769 0.97552 1.02736 1.18432 0.83314 0.94603 0.97271 1.19972 0.93738 0.93876 1.07365 1.20100 0.91509 0.97510 1.00736 1.21079 0.91362 0.96229 1.03328 1.22206 0.97487 0.78973 1.03390 1.45957 1.03606 1.07540 1.71104 1.18190 0.85117 0.83982 0.75414 1.90802 1.81549 1.18262 1.45394 1.18554 0.90856 1.08239 1.04972 1.20789 0.95974 0.93766 0.95395 1.20477 0.92966 1.06382 1.04467 1.20920 0.98539 0.94042 0.93452 1.21144 0.95691 1.04318 1.04125 1.19156 0.91286 0.88803 0.87577 1.84016 1.35384 1.44571 1.40514 1.21487 0.88350 1.17319 1.20464 0.88636 1.25394 0.97670 0.96055 0.97207 1.70093 1.16655 1.27360 1.33074 0.85621 0.79447 0.79183 0.79014 1.18917 1.19983 1.19919 0.91741 0.91816 0.91979 0.85833 0.84116 0.86242 0.89444 0.89495 0.89943 0.89809 0.86596 0.87010 0.86979 0.84891 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.02 36.01 0.36 -0.62 16 2 C -0.12 -1.60 5.88 -104.60 -0.62 -2.22 16 3 C -0.09 -1.37 9.68 -39.71 -0.38 -1.76 16 4 C -0.13 -2.40 9.46 -39.20 -0.37 -2.77 16 5 C 0.16 2.90 6.62 -83.59 -0.55 2.35 16 6 C -0.15 -2.12 6.23 -104.27 -0.65 -2.77 16 7 C -0.08 -1.02 9.70 -39.61 -0.38 -1.40 16 8 C -0.08 -0.94 6.94 -27.24 -0.19 -1.13 16 9 C 0.10 1.41 6.15 -3.63 -0.02 1.38 16 10 N -0.56 -10.51 3.13 -114.06 -0.36 -10.87 16 11 C 0.58 13.33 7.09 -12.48 -0.09 13.24 16 12 O -0.49 -13.23 14.58 -6.73 -0.10 -13.33 16 13 C -0.22 -4.82 5.36 -104.81 -0.56 -5.39 16 14 C -0.04 -0.70 8.38 -39.20 -0.33 -1.03 16 15 C -0.22 -3.56 10.02 -39.61 -0.40 -3.96 16 16 C -0.05 -0.87 10.03 -39.53 -0.40 -1.27 16 17 C -0.23 -4.91 9.16 -39.44 -0.36 -5.27 16 18 C 0.19 4.66 6.63 -38.59 -0.26 4.40 16 19 O -0.15 -4.24 8.71 -11.22 -0.10 -4.34 16 20 C -0.40 -11.22 9.49 30.90 0.29 -10.93 16 21 H 0.10 2.42 5.20 -52.48 -0.27 2.15 16 22 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16 23 N -0.84 -25.21 13.67 55.48 0.76 -24.45 16 24 Si 0.94 20.43 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.14 2.97 6.29 -52.49 -0.33 2.63 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.98 5.70 -51.93 -0.30 0.69 16 38 H 0.12 1.65 6.24 -52.49 -0.33 1.33 16 39 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -34.52 351.63 -9.40 -43.92 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.88 Total: 6.38 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -5.00 Total: -18.01 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.40 Total: -35.31 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.20 Total: -17.67 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.52 -9.40 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773758391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.228 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds