Wall clock time and date at job start Tue Mar 31 2020 14:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30908 * 123.03731 * 2 1 4 4 C 1.29391 * 117.47346 * 179.97438 * 3 2 1 5 5 C 1.50697 * 124.71152 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 239.99864 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 C 1.53002 * 109.46891 * 299.99597 * 8 7 6 10 10 C 1.52997 * 109.46978 * 60.00410 * 9 8 7 11 11 S 1.70926 * 110.58529 * 0.25897 * 4 3 2 12 12 C 1.36763 * 123.03429 * 179.97438 * 2 1 3 13 13 C 1.46506 * 126.17625 * 0.02778 * 12 2 1 14 14 O 1.21610 * 119.99971 * 359.97438 * 13 12 2 15 15 O 1.34871 * 119.99567 * 179.97438 * 13 12 2 16 16 C 1.45207 * 116.99755 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47008 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46742 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00176 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99500 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00608 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99641 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46910 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46991 * 120.00056 * 22 20 18 25 25 H 1.48496 * 109.46994 * 239.99764 * 22 20 18 26 26 H 1.09000 * 109.46593 * 90.03164 * 1 2 3 27 27 H 1.08997 * 109.46789 * 210.02835 * 1 2 3 28 28 H 1.08995 * 109.46938 * 330.03195 * 1 2 3 29 29 H 1.08998 * 109.46862 * 0.02562 * 5 4 3 30 30 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 31 31 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 32 32 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 34 34 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 35 35 H 1.09004 * 109.47108 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.47097 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.47142 * 300.00176 * 9 8 7 38 38 H 1.09001 * 109.47375 * 59.99908 * 10 9 8 39 39 H 1.09000 * 109.47140 * 179.97438 * 10 9 8 40 40 H 1.09005 * 109.46621 * 300.00062 * 16 15 13 41 41 H 1.08991 * 109.46913 * 60.00134 * 16 15 13 42 42 H 1.09001 * 109.47555 * 299.99782 * 17 16 15 43 43 H 1.09001 * 109.47498 * 60.00196 * 17 16 15 44 44 H 0.96994 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0974 0.0000 4 6 3.5085 0.9720 0.0005 5 6 4.4827 2.1217 0.0000 6 6 5.3632 2.0437 -1.2488 7 6 6.3526 3.2107 -1.2488 8 6 7.2321 3.1338 0.0007 9 6 6.3516 3.2119 1.2496 10 6 5.3622 2.0449 1.2497 11 16 3.9515 -0.6789 -0.0062 12 6 2.2526 -1.1465 0.0005 13 6 1.7326 -2.5162 0.0006 14 8 0.5321 -2.7109 0.0006 15 8 2.5853 -3.5612 0.0006 16 6 1.9996 -4.8899 0.0012 17 6 3.1138 -5.9383 0.0018 18 6 2.5059 -7.3173 0.0030 19 1 1.4323 -7.4342 0.0038 20 6 3.3205 -8.4298 0.0032 21 7 4.6279 -8.2876 0.0027 22 14 2.5670 -10.1391 0.0041 23 1 1.0863 -10.0273 0.0051 24 1 3.0075 -10.8749 -1.2083 25 1 3.0083 -10.8740 1.2166 26 1 -0.3632 -0.0006 -1.0277 27 1 -0.3633 -0.8897 0.5143 28 1 -0.3633 0.8902 0.5133 29 1 3.9335 3.0632 -0.0003 30 1 4.7366 2.0981 -2.1391 31 1 5.9123 1.1022 -1.2479 32 1 6.9796 3.1554 -2.1388 33 1 5.8038 4.1525 -1.2495 34 1 7.7809 2.1922 0.0014 35 1 7.9373 3.9650 0.0004 36 1 6.9782 3.1575 2.1399 37 1 5.8028 4.1536 1.2489 38 1 5.9111 1.1031 1.2504 39 1 4.7352 2.1002 2.1396 40 1 1.3832 -5.0147 0.8915 41 1 1.3826 -5.0153 -0.8885 42 1 3.7306 -5.8136 -0.8883 43 1 3.7305 -5.8127 0.8917 44 1 5.2009 -9.0701 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775124103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:40 Heat of formation + Delta-G solvation = -83.346223 kcal Electronic energy + Delta-G solvation = -24251.387014 eV Core-core repulsion = 20680.005377 eV Total energy + Delta-G solvation = -3571.381637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51441 -39.63938 -38.59197 -36.13548 -33.38137 -33.08799 -31.18058 -30.65955 -30.34123 -28.56400 -25.26887 -24.93715 -23.00961 -22.50961 -21.96558 -20.88737 -20.32649 -19.16171 -18.25883 -16.89947 -16.42778 -16.12879 -16.08170 -15.64838 -15.02935 -14.69734 -14.55017 -14.52340 -14.23727 -13.90226 -13.34855 -13.07258 -13.00171 -12.86499 -12.62426 -12.49983 -12.35298 -12.29279 -11.68429 -11.57101 -11.39581 -11.29366 -11.08763 -10.94310 -10.81037 -10.71055 -10.69206 -10.56705 -10.31442 -9.89434 -9.73278 -9.64288 -9.55676 -9.31367 -8.81677 -8.47072 -6.12797 -4.17224 0.06559 1.08107 1.56128 2.26666 3.02210 3.04280 3.26154 3.33783 3.38875 3.62876 4.27849 4.33876 4.37422 4.41923 4.78788 4.82699 4.83166 4.86742 5.05375 5.05502 5.08572 5.22929 5.23987 5.27525 5.46092 5.59158 5.63583 5.64021 5.69637 5.70880 5.71273 5.77548 5.85042 5.89413 6.01070 6.03801 6.04778 6.22420 6.58536 6.85569 7.48087 7.52015 7.58514 7.83054 8.07475 8.20997 8.88398 9.47359 10.98765 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002593 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.461996 B =10795.128197 C =12100.895597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.153 3.847 3 N -0.480 5.480 4 C 0.053 3.947 5 C -0.013 4.013 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.116 4.116 11 S 0.225 5.775 12 C -0.293 4.293 13 C 0.539 3.461 14 O -0.501 6.501 15 O -0.353 6.353 16 C 0.077 3.923 17 C 0.024 3.976 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 25.821 0.008 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.014 3.986 3 N -0.194 5.194 4 C -0.221 4.221 5 C -0.035 4.035 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.161 4.161 9 C -0.154 4.154 10 C -0.155 4.155 11 S 0.485 5.515 12 C -0.415 4.415 13 C 0.382 3.618 14 O -0.392 6.392 15 O -0.269 6.269 16 C 0.005 3.995 17 C -0.013 4.013 18 C -0.564 4.564 19 H 0.079 0.921 20 C -0.141 4.141 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.041 25.579 0.001 25.897 hybrid contribution -1.390 -1.115 -0.019 1.782 sum 2.651 24.464 -0.019 24.608 Atomic orbital electron populations 1.20669 0.85882 1.04524 1.03812 1.20961 0.98505 0.84585 0.94564 1.66073 1.04467 1.31143 1.17727 1.27552 0.94338 0.99591 1.00619 1.19954 0.92542 0.94209 0.96766 1.21720 0.97381 0.99864 0.96557 1.21507 0.97452 0.98164 0.98263 1.21590 0.97845 1.02300 0.94399 1.21507 0.97449 0.98168 0.98264 1.21719 0.97387 0.99859 0.96549 1.84200 1.04286 0.99334 1.63639 1.24913 0.97296 0.96394 1.22874 1.19300 0.84723 0.84289 0.73459 1.90805 1.15874 1.85897 1.46620 1.86627 1.40312 1.17069 1.82903 1.23726 0.99057 0.75537 1.01216 1.19186 0.92792 0.90348 0.98938 1.21003 0.93314 0.89920 1.52163 0.92142 1.24984 0.94805 0.99523 0.94835 1.69976 1.02882 1.30138 1.49796 0.86414 0.79471 0.83715 0.77720 1.19567 1.20806 1.20811 0.89938 0.88230 0.90583 0.87896 0.91127 0.91134 0.91386 0.91644 0.91601 0.91763 0.91384 0.91645 0.91132 0.91124 0.92026 0.92022 0.95302 0.95302 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.72 36.01 0.35 -0.79 16 2 C 0.15 2.23 6.83 -83.52 -0.57 1.66 16 3 N -0.48 -6.47 10.49 -7.47 -0.08 -6.55 16 4 C 0.05 0.61 6.03 -13.31 -0.08 0.53 16 5 C -0.01 -0.11 2.61 -91.77 -0.24 -0.35 16 6 C -0.12 -0.85 5.09 -26.73 -0.14 -0.99 16 7 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 8 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 9 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 10 C -0.12 -0.85 5.10 -26.73 -0.14 -0.99 16 11 S 0.23 2.92 22.34 -107.50 -2.40 0.52 16 12 C -0.29 -4.67 6.52 -36.79 -0.24 -4.90 16 13 C 0.54 10.17 7.92 34.06 0.27 10.44 16 14 O -0.50 -9.98 14.12 -19.35 -0.27 -10.26 16 15 O -0.35 -7.32 10.12 -40.96 -0.41 -7.73 16 16 C 0.08 1.72 5.42 37.16 0.20 1.93 16 17 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 18 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.10 1.39 6.06 -51.93 -0.31 1.08 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -31.10 374.21 -10.45 -41.55 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -7.02 Total: -5.08 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.62 Total: -8.90 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.66 Total: -32.07 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.69 Total: -17.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.40 Total: 0.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.10 -10.45 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775124103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.795 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds