Wall clock time and date at job start Tue Mar 31 2020 14:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30908 * 123.03731 * 2 1 4 4 C 1.29391 * 117.47346 * 179.97438 * 3 2 1 5 5 C 1.50697 * 124.71152 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 239.99864 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 C 1.53002 * 109.46891 * 299.99597 * 8 7 6 10 10 C 1.52997 * 109.46978 * 60.00410 * 9 8 7 11 11 S 1.70926 * 110.58529 * 0.25897 * 4 3 2 12 12 C 1.36763 * 123.03429 * 179.97438 * 2 1 3 13 13 C 1.46506 * 126.17625 * 0.02778 * 12 2 1 14 14 O 1.21610 * 119.99971 * 359.97438 * 13 12 2 15 15 O 1.34871 * 119.99567 * 179.97438 * 13 12 2 16 16 C 1.45207 * 116.99755 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47008 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46742 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00176 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99500 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00608 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99641 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46910 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46991 * 120.00056 * 22 20 18 25 25 H 1.48496 * 109.46994 * 239.99764 * 22 20 18 26 26 H 1.09000 * 109.46593 * 90.03164 * 1 2 3 27 27 H 1.08997 * 109.46789 * 210.02835 * 1 2 3 28 28 H 1.08995 * 109.46938 * 330.03195 * 1 2 3 29 29 H 1.08998 * 109.46862 * 0.02562 * 5 4 3 30 30 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 31 31 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 32 32 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 34 34 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 35 35 H 1.09004 * 109.47108 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.47097 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.47142 * 300.00176 * 9 8 7 38 38 H 1.09001 * 109.47375 * 59.99908 * 10 9 8 39 39 H 1.09000 * 109.47140 * 179.97438 * 10 9 8 40 40 H 1.09005 * 109.46621 * 300.00062 * 16 15 13 41 41 H 1.08991 * 109.46913 * 60.00134 * 16 15 13 42 42 H 1.09001 * 109.47555 * 299.99782 * 17 16 15 43 43 H 1.09001 * 109.47498 * 60.00196 * 17 16 15 44 44 H 0.96994 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0974 0.0000 4 6 3.5085 0.9720 0.0005 5 6 4.4827 2.1217 0.0000 6 6 5.3632 2.0437 -1.2488 7 6 6.3526 3.2107 -1.2488 8 6 7.2321 3.1338 0.0007 9 6 6.3516 3.2119 1.2496 10 6 5.3622 2.0449 1.2497 11 16 3.9515 -0.6789 -0.0062 12 6 2.2526 -1.1465 0.0005 13 6 1.7326 -2.5162 0.0006 14 8 0.5321 -2.7109 0.0006 15 8 2.5853 -3.5612 0.0006 16 6 1.9996 -4.8899 0.0012 17 6 3.1138 -5.9383 0.0018 18 6 2.5059 -7.3173 0.0030 19 1 1.4323 -7.4342 0.0038 20 6 3.3205 -8.4298 0.0032 21 7 4.6279 -8.2876 0.0027 22 14 2.5670 -10.1391 0.0041 23 1 1.0863 -10.0273 0.0051 24 1 3.0075 -10.8749 -1.2083 25 1 3.0083 -10.8740 1.2166 26 1 -0.3632 -0.0006 -1.0277 27 1 -0.3633 -0.8897 0.5143 28 1 -0.3633 0.8902 0.5133 29 1 3.9335 3.0632 -0.0003 30 1 4.7366 2.0981 -2.1391 31 1 5.9123 1.1022 -1.2479 32 1 6.9796 3.1554 -2.1388 33 1 5.8038 4.1525 -1.2495 34 1 7.7809 2.1922 0.0014 35 1 7.9373 3.9650 0.0004 36 1 6.9782 3.1575 2.1399 37 1 5.8028 4.1536 1.2489 38 1 5.9111 1.1031 1.2504 39 1 4.7352 2.1002 2.1396 40 1 1.3832 -5.0147 0.8915 41 1 1.3826 -5.0153 -0.8885 42 1 3.7306 -5.8136 -0.8883 43 1 3.7305 -5.8127 0.8917 44 1 5.2009 -9.0701 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775124103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:39 Heat of formation + Delta-G solvation = -98.840355 kcal Electronic energy + Delta-G solvation = -24252.058890 eV Core-core repulsion = 20680.005377 eV Total energy + Delta-G solvation = -3572.053513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76597 -40.91926 -39.30907 -37.73939 -35.48087 -33.96394 -32.46046 -31.70320 -31.36459 -29.83706 -27.08153 -25.95303 -24.03812 -23.53226 -22.76586 -22.69484 -21.13941 -20.23541 -19.48433 -18.59271 -17.83662 -17.70350 -17.59417 -16.58145 -16.44746 -16.17039 -15.39792 -15.16615 -15.06208 -14.93701 -14.84660 -14.43432 -14.40812 -13.92435 -13.81034 -13.34505 -13.21343 -13.16930 -13.10395 -13.06774 -12.66018 -12.60764 -12.52383 -12.21464 -12.07958 -11.90053 -11.59998 -11.56032 -11.45068 -11.40253 -11.23605 -11.13222 -10.88348 -10.68055 -10.63190 -9.88665 -8.28827 -6.42135 -1.06629 0.00033 0.48059 1.05017 1.39651 1.40992 1.51722 1.58801 1.70185 2.38591 2.70370 3.05758 3.55679 3.60219 3.74446 3.76669 3.87964 4.15035 4.17635 4.19458 4.28335 4.29617 4.46835 4.53185 4.56752 4.57735 4.62830 4.63791 4.70300 4.76183 4.99132 5.05389 5.09677 5.14162 5.22950 5.23406 5.26773 5.36943 5.40829 5.42278 5.44689 5.56776 5.70232 6.03338 6.39195 6.51484 6.71375 7.27744 8.84115 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002593 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.461996 B =10795.128197 C =12100.895597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.166 3.834 3 N -0.493 5.493 4 C 0.078 3.922 5 C -0.012 4.012 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.124 4.124 9 C -0.113 4.113 10 C -0.116 4.116 11 S 0.231 5.769 12 C -0.335 4.335 13 C 0.540 3.460 14 O -0.518 6.518 15 O -0.362 6.362 16 C 0.092 3.908 17 C 0.032 3.968 18 C -0.549 4.549 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 27.224 -0.029 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.025 3.975 3 N -0.208 5.208 4 C -0.195 4.195 5 C -0.034 4.034 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.162 4.162 9 C -0.150 4.150 10 C -0.155 4.155 11 S 0.492 5.508 12 C -0.457 4.457 13 C 0.385 3.615 14 O -0.410 6.410 15 O -0.279 6.279 16 C 0.019 3.981 17 C -0.006 4.006 18 C -0.587 4.587 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.033 26.998 -0.036 27.297 hybrid contribution -1.317 -1.372 -0.007 1.902 sum 2.715 25.626 -0.043 25.769 Atomic orbital electron populations 1.20714 0.84828 1.04790 1.04495 1.21304 0.99405 0.84363 0.92403 1.66204 1.05037 1.30389 1.19167 1.28252 0.94388 0.99794 0.97077 1.20184 0.92226 0.93026 0.97974 1.21744 0.97485 1.00622 0.95664 1.21497 0.97152 0.97592 0.98762 1.21605 0.97912 1.02600 0.94041 1.21498 0.97148 0.97594 0.98765 1.21742 0.97493 1.00616 0.95656 1.84165 1.02604 1.00201 1.63812 1.24747 0.99177 0.95051 1.26707 1.19655 0.84437 0.84715 0.72733 1.90784 1.16345 1.86224 1.47600 1.86600 1.40889 1.16853 1.83574 1.23281 0.97375 0.75959 1.01456 1.18988 0.93296 0.91536 0.96730 1.21380 0.93809 0.90974 1.52509 0.91567 1.25965 0.95212 1.04048 0.94036 1.70094 1.04386 1.31695 1.50360 0.85266 0.78912 0.78028 0.78041 1.18597 1.20020 1.20031 0.88902 0.89717 0.88445 0.86948 0.91423 0.91553 0.90691 0.90829 0.92060 0.90574 0.90691 0.90829 0.91553 0.91425 0.91725 0.91720 0.97496 0.97500 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 9.72 71.24 0.69 -1.50 16 2 C 0.17 4.73 6.83 42.35 0.29 5.02 16 3 N -0.49 -12.67 10.49 -177.56 -1.86 -14.53 16 4 C 0.08 1.72 6.03 88.47 0.53 2.26 16 5 C -0.01 -0.18 2.61 -11.54 -0.03 -0.21 16 6 C -0.12 -1.50 5.09 30.59 0.16 -1.35 16 7 C -0.11 -1.02 5.92 30.59 0.18 -0.84 16 8 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 9 C -0.11 -1.02 5.92 30.59 0.18 -0.84 16 10 C -0.12 -1.50 5.10 30.60 0.16 -1.35 16 11 S 0.23 5.98 22.34 -56.49 -1.26 4.72 16 12 C -0.33 -10.77 6.52 24.08 0.16 -10.61 16 13 C 0.54 20.83 7.92 69.98 0.55 21.39 16 14 O -0.52 -21.01 14.12 19.47 0.27 -20.73 16 15 O -0.36 -15.51 10.12 -57.85 -0.59 -16.09 16 16 C 0.09 4.24 5.42 71.98 0.39 4.63 16 17 C 0.03 1.72 5.35 29.85 0.16 1.88 16 18 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 20 C 0.01 0.37 5.46 84.66 0.46 0.83 16 21 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 22 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.36 6.06 -2.39 -0.01 2.35 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.92 7.91 -2.39 -0.02 0.90 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.92 7.92 -2.39 -0.02 0.90 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 2.91 8.14 -2.38 -0.02 2.89 16 41 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -66.84 374.21 4.16 -62.68 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.98 Total: 6.06 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.30 Total: -12.60 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -1.58 Total: -69.73 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.31 Total: -36.82 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.26 Total: 4.72 kcal Total: -66.84 4.16 -62.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775124103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.157 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds