Wall clock time and date at job start Tue Mar 31 2020 14:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.51977 * 2 1 4 4 O 1.21298 * 119.99928 * 240.12602 * 3 2 1 5 5 N 1.34781 * 120.00318 * 60.12293 * 3 2 1 6 6 C 1.40083 * 120.00140 * 175.62927 * 5 3 2 7 7 C 1.38710 * 120.07519 * 34.59086 * 6 5 3 8 8 C 1.38193 * 120.01854 * 179.76553 * 7 6 5 9 9 C 1.38555 * 120.17604 * 0.51352 * 8 7 6 10 10 F 1.35095 * 119.92217 * 179.76890 * 9 8 7 11 11 C 1.38341 * 120.15117 * 359.73662 * 9 8 7 12 12 C 1.38736 * 119.98091 * 0.02562 * 11 9 8 13 13 O 1.35770 * 120.09113 * 180.02562 * 12 11 9 14 14 C 1.34817 * 116.99711 * 5.43405 * 13 12 11 15 15 H 1.07996 * 119.99718 * 354.95381 * 14 13 12 16 16 C 1.38635 * 119.99796 * 174.95875 * 14 13 12 17 17 N 1.31575 * 120.00050 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47600 * 59.99494 * 18 16 14 20 20 H 1.48510 * 109.47251 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47053 * 299.99420 * 18 16 14 22 22 C 1.53180 * 109.57660 * 239.84128 * 2 1 3 23 23 C 1.53173 * 109.03602 * 183.08110 * 22 2 1 24 24 C 1.53095 * 109.16477 * 56.97965 * 23 22 2 25 25 O 1.42904 * 109.41630 * 302.39372 * 24 23 22 26 26 C 1.42905 * 114.09784 * 61.15180 * 25 24 23 27 27 H 1.09008 * 109.47046 * 60.00232 * 1 2 3 28 28 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47443 * 299.99938 * 1 2 3 30 30 H 0.97003 * 119.99200 * 355.35489 * 5 3 2 31 31 H 1.07997 * 119.99446 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.91118 * 180.25237 * 8 7 6 33 33 H 1.08008 * 120.00952 * 180.02562 * 11 9 8 34 34 H 0.96996 * 119.99952 * 180.02562 * 17 16 14 35 35 H 1.08993 * 109.54169 * 302.95061 * 22 2 1 36 36 H 1.09003 * 109.54200 * 63.21833 * 22 2 1 37 37 H 1.09001 * 109.52504 * 297.07534 * 23 22 2 38 38 H 1.09001 * 109.57503 * 176.91864 * 23 22 2 39 39 H 1.09001 * 109.48002 * 182.40913 * 24 23 22 40 40 H 1.09000 * 109.48384 * 62.37799 * 24 23 22 41 41 H 1.09002 * 109.47874 * 178.85768 * 26 25 24 42 42 H 1.08996 * 109.47705 * 58.83068 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7293 1.8172 -0.9109 5 7 1.7107 2.2499 1.0121 6 6 2.2525 3.5408 1.0596 7 6 2.4872 4.2399 -0.1152 8 6 3.0172 5.5152 -0.0667 9 6 3.3256 6.0954 1.1531 10 9 3.8478 7.3406 1.1943 11 6 3.0992 5.4027 2.3290 12 6 2.5628 4.1239 2.2881 13 8 2.3392 3.4422 3.4408 14 6 2.5540 4.1048 4.5951 15 1 2.9659 5.1029 4.5761 16 6 2.2460 3.5048 5.8063 17 7 1.7437 2.2889 5.8293 18 14 2.5428 4.4231 7.4057 19 1 1.7452 5.6756 7.4127 20 1 2.1333 3.5695 8.5499 21 1 3.9854 4.7542 7.5259 22 6 2.0432 -0.7251 -1.2479 23 6 3.5729 -0.7855 -1.1969 24 6 4.0056 -1.4793 0.0974 25 8 3.4694 -0.7722 1.2176 26 6 2.0415 -0.7241 1.2480 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.1000 1.9542 1.7054 31 1 2.2518 3.7891 -1.0679 32 1 3.1955 6.0595 -0.9823 33 1 3.3400 5.8573 3.2787 34 1 1.5279 1.8692 6.6767 35 1 1.6390 -1.7370 -1.2737 36 1 1.7293 -0.1827 -2.1397 37 1 3.9784 0.2260 -1.2211 38 1 3.9450 -1.3476 -2.0535 39 1 5.0939 -1.4869 0.1594 40 1 3.6339 -2.5039 0.1025 41 1 1.7148 -0.1879 2.1390 42 1 1.6440 -1.7388 1.2682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781165460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:14 Heat of formation + Delta-G solvation = -150.796243 kcal Electronic energy + Delta-G solvation = -28413.601429 eV Core-core repulsion = 24273.081764 eV Total energy + Delta-G solvation = -4140.519666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85824 -42.13896 -40.83084 -39.32964 -37.96579 -35.73762 -35.44464 -34.31523 -33.02856 -31.12205 -29.88885 -27.90344 -27.41346 -26.06821 -24.99696 -23.85248 -23.17463 -22.29233 -20.50930 -20.15016 -19.43538 -18.32812 -18.07277 -17.13920 -17.06465 -16.95039 -16.70250 -16.53390 -16.10140 -15.94423 -15.73752 -15.47677 -15.34731 -15.12510 -15.05410 -14.84588 -14.07311 -13.75988 -13.58883 -13.56104 -13.38582 -13.21332 -13.02160 -12.98834 -12.88495 -12.57088 -12.34966 -12.17129 -11.97711 -11.66978 -11.55900 -11.43600 -11.13103 -10.82272 -10.64928 -10.31157 -9.57777 -8.78794 -8.50427 -6.16997 0.16412 0.44294 1.36653 1.45123 1.50450 1.57229 2.09962 2.17126 2.64850 2.97093 3.05212 3.15680 3.43185 3.45756 3.58096 3.81520 3.90706 3.97672 4.11457 4.15586 4.25097 4.34382 4.46085 4.51268 4.60779 4.70359 4.71971 4.76185 4.86383 4.90653 4.92273 5.00769 5.03880 5.19386 5.20422 5.24578 5.28880 5.33758 5.45111 5.57824 5.92865 6.02028 6.25955 6.48654 6.93216 7.15507 7.61724 8.69472 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.005054 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.817902 B = 5539.208262 C = 7395.080013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.526 3.474 4 O -0.553 6.553 5 N -0.650 5.650 6 C 0.059 3.941 7 C -0.051 4.051 8 C -0.206 4.206 9 C 0.123 3.877 10 F -0.144 7.144 11 C -0.267 4.267 12 C 0.131 3.869 13 O -0.199 6.199 14 C -0.419 4.419 15 H 0.097 0.903 16 C -0.007 4.007 17 N -0.901 5.901 18 Si 1.011 2.989 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.090 4.090 23 C -0.165 4.165 24 C 0.052 3.948 25 O -0.411 6.411 26 C 0.070 3.930 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.413 0.587 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.136 0.864 34 H 0.275 0.725 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -7.180 -11.447 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C 0.315 3.685 4 O -0.432 6.432 5 N -0.294 5.294 6 C -0.036 4.036 7 C -0.072 4.072 8 C -0.226 4.226 9 C 0.103 3.897 10 F -0.123 7.123 11 C -0.288 4.288 12 C 0.077 3.923 13 O -0.104 6.104 14 C -0.495 4.495 15 H 0.115 0.885 16 C -0.207 4.207 17 N -0.537 5.537 18 Si 0.830 3.170 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.188 1.188 22 C -0.127 4.127 23 C -0.202 4.202 24 C -0.024 4.024 25 O -0.331 6.331 26 C -0.007 4.007 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.526 -7.230 -11.736 14.013 hybrid contribution 0.087 0.724 1.264 1.459 sum -2.439 -6.506 -10.472 12.567 Atomic orbital electron populations 1.21843 0.89436 1.05179 1.03130 1.21568 0.99476 0.90266 0.99811 1.21063 0.78889 0.87833 0.80684 1.90551 1.38709 1.77427 1.36468 1.43255 1.46676 1.11567 1.27860 1.17207 1.07626 0.87624 0.91124 1.20844 0.97064 0.92350 0.96903 1.20879 1.08322 0.96828 0.96573 1.17453 0.97997 0.80027 0.94189 1.91425 1.84388 1.39034 1.97456 1.20937 1.12278 0.96756 0.98831 1.19225 0.94561 0.91218 0.87265 1.83917 1.76724 1.38372 1.11428 1.21699 1.44921 1.01292 0.81578 0.88523 1.26369 0.95444 0.97035 1.01845 1.70113 1.40903 1.14208 1.28493 0.84753 0.79364 0.77870 0.74970 1.18337 1.19285 1.18826 1.21469 0.95136 1.00982 0.95122 1.22334 0.97057 1.02223 0.98626 1.22822 0.99252 0.95249 0.85055 1.88026 1.21019 1.77229 1.46791 1.22764 0.80931 1.01178 0.95861 0.91047 0.88077 0.92108 0.75102 0.82895 0.82442 0.84680 0.91564 0.87932 0.90867 0.92389 0.88744 0.89213 0.90588 0.90187 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.38 71.98 0.60 -1.95 16 2 C -0.11 -2.67 0.63 -52.84 -0.03 -2.71 16 3 C 0.53 17.94 5.75 87.66 0.50 18.44 16 4 O -0.55 -20.99 11.26 -3.08 -0.03 -21.03 16 5 N -0.65 -24.78 4.95 -303.03 -1.50 -26.28 16 6 C 0.06 2.53 6.33 38.23 0.24 2.77 16 7 C -0.05 -1.95 8.70 22.37 0.19 -1.75 16 8 C -0.21 -7.36 10.02 22.33 0.22 -7.14 16 9 C 0.12 4.90 7.29 22.37 0.16 5.06 16 10 F -0.14 -5.39 17.26 44.97 0.78 -4.62 16 11 C -0.27 -12.11 9.14 22.41 0.20 -11.90 16 12 C 0.13 6.36 6.66 22.69 0.15 6.51 16 13 O -0.20 -11.06 9.32 -22.83 -0.21 -11.28 16 14 C -0.42 -23.18 9.49 67.91 0.64 -22.53 16 15 H 0.10 5.04 5.20 -2.91 -0.02 5.02 16 16 C -0.01 -0.36 5.49 84.83 0.47 0.10 16 17 N -0.90 -50.88 13.67 21.61 0.30 -50.59 16 18 Si 1.01 41.15 29.55 68.60 2.03 43.18 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 C -0.09 -1.85 4.46 30.71 0.14 -1.71 16 23 C -0.16 -3.91 5.81 30.68 0.18 -3.74 16 24 C 0.05 1.27 6.84 72.01 0.49 1.76 16 25 O -0.41 -13.68 10.45 -148.98 -1.56 -15.23 16 26 C 0.07 1.89 5.47 72.01 0.39 2.28 16 27 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.21 7.48 -2.39 -0.02 1.19 16 30 H 0.41 15.50 7.42 -92.71 -0.69 14.81 16 31 H 0.15 5.46 6.19 -2.91 -0.02 5.44 16 32 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.14 6.20 5.64 -2.91 -0.02 6.18 16 34 H 0.28 14.33 8.31 -92.71 -0.77 13.55 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.55 8.02 -2.39 -0.02 1.53 16 37 H 0.06 1.86 5.82 -2.39 -0.01 1.85 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 2.54 7.62 -2.39 -0.02 2.53 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.28 345.02 4.74 -63.54 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.38 Total: 38.80 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.57 Total: -16.49 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -1.21 Total: -76.87 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.80 Total: -47.54 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -68.28 4.74 -63.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781165460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.258 kcal (2) G-P(sol) polarization free energy of solvation -68.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds