Wall clock time and date at job start Tue Mar 31 2020 14:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.51930 * 2 1 4 4 O 1.21289 * 119.99957 * 119.87746 * 3 2 1 5 5 N 1.34783 * 119.99992 * 299.87595 * 3 2 1 6 6 C 1.40087 * 120.00185 * 184.37069 * 5 3 2 7 7 C 1.38711 * 120.07353 * 325.41282 * 6 5 3 8 8 C 1.38186 * 120.02126 * 179.97438 * 7 6 5 9 9 C 1.38549 * 120.17637 * 359.97438 * 8 7 6 10 10 F 1.35097 * 119.92409 * 179.97438 * 9 8 7 11 11 C 1.38346 * 120.15436 * 0.02627 * 9 8 7 12 12 C 1.38741 * 119.97191 * 359.97438 * 11 9 8 13 13 O 1.35777 * 120.08358 * 180.02562 * 12 11 9 14 14 C 1.34811 * 117.00180 * 5.44494 * 13 12 11 15 15 H 1.07995 * 119.99959 * 354.96815 * 14 13 12 16 16 C 1.38639 * 120.00089 * 174.96054 * 14 13 12 17 17 N 1.31569 * 119.99821 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47169 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47310 * 120.00116 * 18 16 14 21 21 H 1.48504 * 109.46946 * 240.00208 * 18 16 14 22 22 C 1.53175 * 109.57582 * 120.15753 * 2 1 3 23 23 C 1.53182 * 109.03312 * 176.92153 * 22 2 1 24 24 C 1.53089 * 109.16119 * 303.01461 * 23 22 2 25 25 O 1.42904 * 109.41324 * 57.61500 * 24 23 22 26 26 C 1.42899 * 114.09882 * 298.83558 * 25 24 23 27 27 H 1.08991 * 109.47097 * 60.00272 * 1 2 3 28 28 H 1.09000 * 109.46676 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47182 * 299.99756 * 1 2 3 30 30 H 0.96996 * 119.99839 * 4.36980 * 5 3 2 31 31 H 1.08001 * 119.99043 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.91418 * 180.02562 * 8 7 6 33 33 H 1.07998 * 120.01208 * 179.71561 * 11 9 8 34 34 H 0.97003 * 119.99895 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.54015 * 296.78371 * 22 2 1 36 36 H 1.08997 * 109.54312 * 57.05181 * 22 2 1 37 37 H 1.09000 * 109.52005 * 183.11193 * 23 22 2 38 38 H 1.08994 * 109.57924 * 62.95364 * 23 22 2 39 39 H 1.08996 * 109.48836 * 297.63096 * 24 23 22 40 40 H 1.09002 * 109.48350 * 177.59302 * 24 23 22 41 41 H 1.09003 * 109.48371 * 301.18356 * 26 25 24 42 42 H 1.08998 * 109.48443 * 181.13793 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7294 1.8172 0.9108 5 7 1.7107 2.2499 -1.0121 6 6 2.2525 3.5409 -1.0598 7 6 2.4872 4.2399 0.1151 8 6 3.0222 5.5132 0.0669 9 6 3.3261 6.0952 -1.1532 10 9 3.8484 7.3404 -1.1944 11 6 3.0949 5.4045 -2.3294 12 6 2.5580 4.1258 -2.2883 13 8 2.3307 3.4457 -3.4413 14 6 2.7520 4.0219 -4.5850 15 1 3.1717 5.0167 -4.5657 16 6 2.6467 3.3371 -5.7858 17 7 2.1351 2.1252 -5.8093 18 14 3.2312 4.1351 -7.3704 19 1 3.7612 5.4907 -7.0758 20 1 4.3029 3.3050 -7.9767 21 1 2.0934 4.2443 -8.3186 22 6 2.0433 -0.7250 1.2479 23 6 3.5730 -0.7853 1.1969 24 6 4.0057 -1.4792 -0.0973 25 8 3.4695 -0.7722 -1.2175 26 6 2.0417 -0.7241 -1.2481 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.1033 1.9529 -1.7076 31 1 2.2519 3.7890 1.0678 32 1 3.2046 6.0558 0.9827 33 1 3.3283 5.8621 -3.2794 34 1 2.0611 1.6462 -6.6496 35 1 1.7293 -0.1826 2.1397 36 1 1.6390 -1.7370 1.2737 37 1 3.9441 -1.3481 2.0535 38 1 3.9794 0.2257 1.2215 39 1 3.6339 -2.5038 -0.1024 40 1 5.0939 -1.4869 -0.1595 41 1 1.6441 -1.7389 -1.2681 42 1 1.7149 -0.1878 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781165461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:18 Heat of formation + Delta-G solvation = -131.853774 kcal Electronic energy + Delta-G solvation = -28440.101213 eV Core-core repulsion = 24300.402955 eV Total energy + Delta-G solvation = -4139.698258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.24582 -40.82569 -39.25490 -37.91797 -36.28958 -34.42131 -34.17278 -32.40199 -31.95775 -29.42374 -28.27184 -26.98408 -25.50972 -25.02651 -23.66863 -22.26966 -21.81718 -20.94896 -19.16546 -18.33227 -17.77507 -16.89041 -16.66230 -15.94049 -15.67368 -15.35221 -15.22883 -14.95529 -14.80766 -14.39370 -14.29655 -14.25216 -13.89417 -13.59548 -13.48887 -13.22275 -12.66254 -12.56982 -12.29934 -12.24392 -12.13269 -12.01021 -11.91454 -11.64837 -11.36807 -11.05292 -10.88205 -10.71213 -10.58934 -10.50163 -10.37142 -9.76850 -9.63002 -9.45234 -9.03944 -8.93792 -7.88057 -7.09960 -6.58521 -4.15812 1.82227 2.13131 2.94493 3.07004 3.09786 3.14806 3.50424 3.86484 4.03279 4.34648 4.50608 4.67628 4.78959 4.85091 4.98829 5.00939 5.12182 5.14371 5.20571 5.42721 5.43922 5.54757 5.59663 5.61710 5.73038 5.75082 5.80302 5.86088 5.92844 6.03279 6.06474 6.17734 6.23994 6.49339 6.58012 6.76850 6.92823 6.94897 7.07924 7.21511 7.31104 7.65476 7.84495 7.93812 8.57736 8.87554 9.48316 10.58510 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.005166 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.216299 B = 5419.097835 C = 7304.404714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.532 3.468 4 O -0.532 6.532 5 N -0.645 5.645 6 C 0.061 3.939 7 C -0.051 4.051 8 C -0.231 4.231 9 C 0.130 3.870 10 F -0.152 7.152 11 C -0.260 4.260 12 C 0.160 3.840 13 O -0.167 6.167 14 C -0.392 4.392 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.856 5.856 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.092 4.092 23 C -0.167 4.167 24 C 0.058 3.942 25 O -0.369 6.369 26 C 0.072 3.928 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.412 0.588 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.271 0.729 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -6.309 9.898 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C 0.319 3.681 4 O -0.409 6.409 5 N -0.289 5.289 6 C -0.033 4.033 7 C -0.071 4.071 8 C -0.251 4.251 9 C 0.110 3.890 10 F -0.131 7.131 11 C -0.281 4.281 12 C 0.104 3.896 13 O -0.069 6.069 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.161 4.161 17 N -0.490 5.490 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.130 4.130 23 C -0.204 4.204 24 C -0.019 4.019 25 O -0.287 6.287 26 C -0.005 4.005 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.248 0.752 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.511 -6.354 10.145 12.231 hybrid contribution 0.013 0.398 -1.037 1.111 sum -2.498 -5.956 9.107 11.165 Atomic orbital electron populations 1.21805 0.91832 1.03105 1.03143 1.21513 0.97672 0.93450 0.99291 1.20182 0.79648 0.86439 0.81841 1.90570 1.37914 1.76634 1.35821 1.43087 1.46725 1.11987 1.27063 1.16867 1.09065 0.86109 0.91288 1.20622 0.97265 0.92154 0.97075 1.20468 1.11299 0.97487 0.95842 1.17460 0.97505 0.79688 0.94329 1.91408 1.84520 1.39631 1.97491 1.20857 1.12614 0.96505 0.98125 1.18799 0.93261 0.90598 0.86970 1.83914 1.68294 1.43358 1.11378 1.21384 1.42150 1.01239 0.81997 0.88825 1.25270 0.96522 0.95633 0.98715 1.70016 1.40751 1.10678 1.27596 0.85629 0.78599 0.79113 0.80048 1.18983 1.20017 1.20056 1.21401 0.95981 0.99325 0.96295 1.22390 0.96167 1.04186 0.97684 1.22622 0.99126 0.94084 0.86102 1.88093 1.19474 1.76167 1.44951 1.22684 0.81826 0.99501 0.96488 0.91436 0.91206 0.91597 0.75200 0.84206 0.86015 0.83983 0.91904 0.90771 0.91508 0.91337 0.88414 0.93655 0.89133 0.92219 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.38 37.16 0.31 -1.14 16 2 C -0.12 -1.52 0.63 -155.52 -0.10 -1.62 16 3 C 0.53 9.09 5.75 -10.98 -0.06 9.03 16 4 O -0.53 -10.18 11.26 5.55 0.06 -10.12 16 5 N -0.65 -11.95 4.96 -9.72 -0.05 -12.00 16 6 C 0.06 1.27 6.33 -83.45 -0.53 0.75 16 7 C -0.05 -0.98 8.70 -39.43 -0.34 -1.33 16 8 C -0.23 -4.34 10.02 -39.49 -0.40 -4.74 16 9 C 0.13 2.64 7.29 -39.43 -0.29 2.35 16 10 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 11 C -0.26 -5.76 9.14 -39.36 -0.36 -6.12 16 12 C 0.16 3.73 6.66 -38.94 -0.26 3.47 16 13 O -0.17 -4.37 9.31 0.02 0.00 -4.37 16 14 C -0.39 -10.39 9.49 30.88 0.29 -10.10 16 15 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 16 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 17 N -0.86 -23.34 13.67 55.48 0.76 -22.58 16 18 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.09 -1.09 4.46 -26.55 -0.12 -1.21 16 23 C -0.17 -2.14 5.81 -26.59 -0.15 -2.30 16 24 C 0.06 0.75 6.84 37.20 0.25 1.01 16 25 O -0.37 -6.22 10.45 -35.23 -0.37 -6.58 16 26 C 0.07 1.02 5.47 37.21 0.20 1.22 16 27 H 0.07 0.69 7.48 -51.93 -0.39 0.31 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.41 7.29 7.41 -40.82 -0.30 6.99 16 31 H 0.14 2.60 6.19 -52.49 -0.33 2.27 16 32 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.14 3.15 5.64 -52.49 -0.30 2.85 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.59 5.83 -51.93 -0.30 1.28 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 1.62 7.61 -51.93 -0.40 1.23 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -30.21 345.01 -6.24 -36.45 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.22 Total: 11.79 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.64 Total: -9.69 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.71 Total: -34.58 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.31 Total: -21.07 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.21 -6.24 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781165461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.407 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds