Wall clock time and date at job start Tue Mar 31 2020 14:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38328 * 120.87155 * 2 1 4 4 C 1.38354 * 119.34126 * 180.25749 * 3 2 1 5 5 N 1.31965 * 121.14352 * 359.74305 * 4 3 2 6 6 C 1.31631 * 121.90819 * 359.97438 * 5 4 3 7 7 C 1.39858 * 120.52212 * 359.97438 * 6 5 4 8 8 C 1.47175 * 120.58824 * 180.02562 * 7 6 5 9 9 C 1.34911 * 119.99755 * 315.15950 * 8 7 6 10 10 C 1.46230 * 120.00384 * 349.79275 * 9 8 7 11 11 O 1.21626 * 120.00167 * 353.18104 * 10 9 8 12 12 O 1.34910 * 120.00204 * 173.17692 * 10 9 8 13 13 C 1.42896 * 116.99926 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46804 * 180.02562 * 13 12 10 15 15 C 1.38633 * 119.74954 * 90.00563 * 14 13 12 16 16 C 1.37617 * 120.24955 * 180.27410 * 15 14 13 17 17 C 1.40713 * 119.74386 * 359.52138 * 16 15 14 18 18 C 1.41397 * 120.24475 * 180.22980 * 17 16 15 19 19 H 1.07998 * 120.00071 * 208.96263 * 18 17 16 20 20 C 1.39952 * 119.99731 * 28.96568 * 18 17 16 21 21 N 1.30817 * 120.00125 * 10.36250 * 20 18 17 22 22 Si 1.86800 * 119.99758 * 190.36422 * 20 18 17 23 23 H 1.48506 * 109.47332 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47302 * 119.99786 * 22 20 18 25 25 H 1.48503 * 109.47040 * 239.99865 * 22 20 18 26 26 C 1.40713 * 119.51148 * 0.47121 * 17 16 15 27 27 C 1.37613 * 119.74421 * 359.76000 * 26 17 16 28 28 H 1.08999 * 109.47237 * 270.26310 * 1 2 3 29 29 H 1.08997 * 109.47713 * 30.27189 * 1 2 3 30 30 H 1.09007 * 109.47225 * 150.26980 * 1 2 3 31 31 H 1.08010 * 120.32423 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.42279 * 179.71909 * 4 3 2 33 33 H 1.08000 * 119.74030 * 179.97438 * 6 5 4 34 34 H 1.08004 * 120.00047 * 135.15851 * 8 7 6 35 35 H 1.08004 * 119.99331 * 169.79352 * 9 8 7 36 36 H 1.08998 * 109.47002 * 60.00724 * 13 12 10 37 37 H 1.08996 * 109.47479 * 300.00268 * 13 12 10 38 38 H 1.08002 * 119.87609 * 359.97438 * 15 14 13 39 39 H 1.08008 * 120.12435 * 179.71789 * 16 15 14 40 40 H 0.97007 * 120.00210 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12861 * 179.73334 * 26 17 16 42 42 H 1.08005 * 119.87499 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1873 0.0000 4 6 3.5997 1.1504 -0.0054 5 7 4.2518 0.0031 -0.0055 6 6 3.6242 -1.1539 0.0000 7 6 2.2265 -1.2038 0.0068 8 6 1.5233 -2.4967 0.0135 9 6 1.9249 -3.4872 -0.8097 10 6 2.9045 -3.2131 -1.8601 11 8 3.2644 -2.0709 -2.0730 12 8 3.4093 -4.2270 -2.5931 13 6 4.3615 -3.8863 -3.6026 14 6 4.8100 -5.1375 -4.3128 15 6 4.1225 -5.5761 -5.4339 16 6 4.5196 -6.7205 -6.0871 17 6 5.6342 -7.4405 -5.6188 18 6 6.0545 -8.6149 -6.2846 19 1 6.5522 -9.3992 -5.7338 20 6 5.8254 -8.7609 -7.6575 21 7 5.4108 -7.7407 -8.3636 22 14 6.1117 -10.4127 -8.4817 23 1 6.5767 -11.3963 -7.4709 24 1 4.8434 -10.8890 -9.0896 25 1 7.1433 -10.2657 -9.5397 26 6 6.3245 -6.9859 -4.4799 27 6 5.9066 -5.8416 -3.8399 28 1 -0.3634 0.0047 1.0276 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3634 -0.8924 -0.5097 31 1 1.6963 2.1338 0.0004 32 1 4.1552 2.0765 -0.0100 33 1 4.1930 -2.0720 -0.0007 34 1 0.6858 -2.6524 0.6774 35 1 1.5227 -4.4828 -0.6928 36 1 5.2221 -3.4016 -3.1416 37 1 3.9027 -3.2062 -4.3203 38 1 3.2690 -5.0203 -5.7933 39 1 3.9798 -7.0628 -6.9577 40 1 5.2523 -7.8418 -9.3153 41 1 7.1787 -7.5331 -4.1094 42 1 6.4351 -5.4905 -2.9658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784107505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:52 Heat of formation + Delta-G solvation = -14.825978 kcal Electronic energy + Delta-G solvation = -25198.718278 eV Core-core repulsion = 21494.863950 eV Total energy + Delta-G solvation = -3703.854328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75038 -39.77073 -37.73555 -36.40946 -34.82701 -33.81651 -33.37957 -30.90912 -30.21934 -29.37200 -28.00867 -27.26585 -25.13636 -23.76880 -22.56471 -21.98224 -21.08130 -20.06249 -19.62859 -17.79646 -17.36849 -16.76473 -16.59944 -16.30058 -15.84720 -15.36499 -14.85601 -14.70725 -14.22311 -13.95047 -13.84605 -13.67806 -13.30214 -13.07963 -12.91986 -12.86724 -12.67302 -12.35222 -12.30631 -12.01828 -11.64166 -11.55009 -11.24651 -11.13160 -10.70309 -10.57863 -10.47331 -10.27204 -10.10629 -9.68620 -9.52228 -9.44366 -9.39084 -9.27623 -8.49952 -7.55262 -7.40011 -6.79128 -4.46728 0.35167 1.20204 1.50585 2.46902 2.96759 3.01112 3.02016 3.04415 3.09504 3.42091 3.75355 3.88692 4.28215 4.47424 4.54129 4.56102 4.61581 4.81052 5.04616 5.15607 5.20214 5.25249 5.33493 5.57359 5.59840 5.63478 5.67399 5.68835 5.78773 5.84927 5.97087 6.14659 6.18236 6.25465 6.32066 6.60882 6.82702 6.87999 7.01055 7.18268 7.27886 7.53534 7.73250 7.95259 7.98064 8.00422 8.05409 8.21112 8.56281 8.81334 8.87662 10.14439 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032653 B = 0.002115 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.298683 B =13235.205390 C =13453.953509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.188 4.188 4 C 0.108 3.892 5 N -0.494 5.494 6 C 0.180 3.820 7 C -0.129 4.129 8 C -0.021 4.021 9 C -0.175 4.175 10 C 0.479 3.521 11 O -0.508 6.508 12 O -0.339 6.339 13 C 0.134 3.866 14 C -0.228 4.228 15 C -0.079 4.079 16 C -0.163 4.163 17 C 0.117 3.883 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.797 5.797 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.225 4.225 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.281 0.719 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 11.928 14.704 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.208 4.208 4 C -0.047 4.047 5 N -0.204 5.204 6 C 0.022 3.978 7 C -0.131 4.131 8 C -0.040 4.040 9 C -0.194 4.194 10 C 0.325 3.675 11 O -0.399 6.399 12 O -0.255 6.255 13 C 0.062 3.938 14 C -0.229 4.229 15 C -0.098 4.098 16 C -0.182 4.182 17 C 0.115 3.885 18 C -0.487 4.487 19 H 0.098 0.902 20 C -0.145 4.145 21 N -0.422 5.422 22 Si 0.737 3.263 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.245 4.245 27 C -0.086 4.086 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.218 12.332 14.329 21.032 hybrid contribution -0.679 -0.594 -0.745 1.170 sum -9.897 11.737 13.584 20.500 Atomic orbital electron populations 1.20843 0.90333 1.03525 1.02736 1.20347 0.96296 0.92114 0.94602 1.21836 0.95604 0.98265 1.05118 1.22769 0.91660 0.96283 0.93964 1.67610 1.40862 0.98341 1.13540 1.22735 0.90187 0.95856 0.89068 1.19806 0.94889 0.93174 1.05248 1.22306 0.95717 0.90537 0.95421 1.22517 0.99698 1.01019 0.96123 1.21485 0.80312 0.83643 0.82069 1.90903 1.58711 1.22449 1.67881 1.86400 1.55147 1.37986 1.45925 1.21334 0.89139 0.96374 0.86991 1.18702 1.02627 1.00831 1.00758 1.20562 0.97600 0.96600 0.95016 1.21364 0.98313 0.96623 1.01889 1.17715 0.89101 0.91727 0.89993 1.19684 1.33395 1.02558 0.93102 0.90246 1.25950 0.92724 0.98011 0.97856 1.69797 1.33619 1.30439 1.08374 0.86183 0.78791 0.81886 0.79401 1.18392 1.19708 1.19923 1.21014 1.02487 0.98888 1.02081 1.20394 0.95744 0.95104 0.97352 0.90414 0.90895 0.90970 0.85034 0.83083 0.83780 0.83697 0.83277 0.92243 0.92309 0.89334 0.86019 0.90840 0.88636 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.67 36.00 0.35 -0.44 16 2 C -0.03 -0.26 5.96 -103.84 -0.62 -0.88 16 3 C -0.19 -1.84 9.80 -39.51 -0.39 -2.23 16 4 C 0.11 1.23 11.17 -17.45 -0.19 1.04 16 5 N -0.49 -7.08 10.34 -12.83 -0.13 -7.22 16 6 C 0.18 2.49 7.80 -17.03 -0.13 2.36 16 7 C -0.13 -1.50 4.52 -104.91 -0.47 -1.97 16 8 C -0.02 -0.19 8.47 -37.14 -0.31 -0.51 16 9 C -0.17 -1.92 10.06 -37.55 -0.38 -2.30 16 10 C 0.48 7.43 6.97 33.94 0.24 7.67 16 11 O -0.51 -8.88 11.91 -19.36 -0.23 -9.11 16 12 O -0.34 -6.12 10.11 -41.07 -0.42 -6.53 16 13 C 0.13 2.60 5.49 36.01 0.20 2.80 16 14 C -0.23 -5.08 5.53 -104.33 -0.58 -5.66 16 15 C -0.08 -1.86 9.67 -39.66 -0.38 -2.25 16 16 C -0.16 -4.20 8.66 -38.87 -0.34 -4.53 16 17 C 0.12 3.10 5.55 -106.83 -0.59 2.50 16 18 C -0.46 -11.96 9.06 -37.74 -0.34 -12.30 16 19 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 20 C 0.07 1.78 5.26 -17.34 -0.09 1.69 16 21 N -0.80 -20.37 10.84 55.55 0.60 -19.77 16 22 Si 0.91 18.41 29.57 -169.99 -5.03 13.38 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.23 -5.49 9.80 -38.88 -0.38 -5.87 16 27 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.07 0.48 7.20 -51.92 -0.37 0.10 16 31 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.14 2.00 7.09 -52.49 -0.37 1.63 16 34 H 0.15 0.79 8.03 -52.48 -0.42 0.37 16 35 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.06 1.11 8.07 -51.93 -0.42 0.70 16 37 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.23 6.23 -52.48 -0.33 2.90 16 40 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 41 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 42 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -30.67 362.62 -9.80 -40.47 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.26 Total: 6.11 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -4.81 Total: -22.80 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.47 Total: -26.98 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.65 Total: -15.64 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.67 -9.80 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784107505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.643 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds