Wall clock time and date at job start Tue Mar 31 2020 14:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38328 * 120.87155 * 2 1 4 4 C 1.38354 * 119.34126 * 180.25749 * 3 2 1 5 5 N 1.31965 * 121.14352 * 359.74305 * 4 3 2 6 6 C 1.31631 * 121.90819 * 359.97438 * 5 4 3 7 7 C 1.39858 * 120.52212 * 359.97438 * 6 5 4 8 8 C 1.47175 * 120.58824 * 180.02562 * 7 6 5 9 9 C 1.34911 * 119.99755 * 315.15950 * 8 7 6 10 10 C 1.46230 * 120.00384 * 349.79275 * 9 8 7 11 11 O 1.21626 * 120.00167 * 353.18104 * 10 9 8 12 12 O 1.34910 * 120.00204 * 173.17692 * 10 9 8 13 13 C 1.42896 * 116.99926 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46804 * 180.02562 * 13 12 10 15 15 C 1.38633 * 119.74954 * 90.00563 * 14 13 12 16 16 C 1.37617 * 120.24955 * 180.27410 * 15 14 13 17 17 C 1.40713 * 119.74386 * 359.52138 * 16 15 14 18 18 C 1.41397 * 120.24475 * 180.22980 * 17 16 15 19 19 H 1.07998 * 120.00071 * 208.96263 * 18 17 16 20 20 C 1.39952 * 119.99731 * 28.96568 * 18 17 16 21 21 N 1.30817 * 120.00125 * 10.36250 * 20 18 17 22 22 Si 1.86800 * 119.99758 * 190.36422 * 20 18 17 23 23 H 1.48506 * 109.47332 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47302 * 119.99786 * 22 20 18 25 25 H 1.48503 * 109.47040 * 239.99865 * 22 20 18 26 26 C 1.40713 * 119.51148 * 0.47121 * 17 16 15 27 27 C 1.37613 * 119.74421 * 359.76000 * 26 17 16 28 28 H 1.08999 * 109.47237 * 270.26310 * 1 2 3 29 29 H 1.08997 * 109.47713 * 30.27189 * 1 2 3 30 30 H 1.09007 * 109.47225 * 150.26980 * 1 2 3 31 31 H 1.08010 * 120.32423 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.42279 * 179.71909 * 4 3 2 33 33 H 1.08000 * 119.74030 * 179.97438 * 6 5 4 34 34 H 1.08004 * 120.00047 * 135.15851 * 8 7 6 35 35 H 1.08004 * 119.99331 * 169.79352 * 9 8 7 36 36 H 1.08998 * 109.47002 * 60.00724 * 13 12 10 37 37 H 1.08996 * 109.47479 * 300.00268 * 13 12 10 38 38 H 1.08002 * 119.87609 * 359.97438 * 15 14 13 39 39 H 1.08008 * 120.12435 * 179.71789 * 16 15 14 40 40 H 0.97007 * 120.00210 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12861 * 179.73334 * 26 17 16 42 42 H 1.08005 * 119.87499 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1873 0.0000 4 6 3.5997 1.1504 -0.0054 5 7 4.2518 0.0031 -0.0055 6 6 3.6242 -1.1539 0.0000 7 6 2.2265 -1.2038 0.0068 8 6 1.5233 -2.4967 0.0135 9 6 1.9249 -3.4872 -0.8097 10 6 2.9045 -3.2131 -1.8601 11 8 3.2644 -2.0709 -2.0730 12 8 3.4093 -4.2270 -2.5931 13 6 4.3615 -3.8863 -3.6026 14 6 4.8100 -5.1375 -4.3128 15 6 4.1225 -5.5761 -5.4339 16 6 4.5196 -6.7205 -6.0871 17 6 5.6342 -7.4405 -5.6188 18 6 6.0545 -8.6149 -6.2846 19 1 6.5522 -9.3992 -5.7338 20 6 5.8254 -8.7609 -7.6575 21 7 5.4108 -7.7407 -8.3636 22 14 6.1117 -10.4127 -8.4817 23 1 6.5767 -11.3963 -7.4709 24 1 4.8434 -10.8890 -9.0896 25 1 7.1433 -10.2657 -9.5397 26 6 6.3245 -6.9859 -4.4799 27 6 5.9066 -5.8416 -3.8399 28 1 -0.3634 0.0047 1.0276 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3634 -0.8924 -0.5097 31 1 1.6963 2.1338 0.0004 32 1 4.1552 2.0765 -0.0100 33 1 4.1930 -2.0720 -0.0007 34 1 0.6858 -2.6524 0.6774 35 1 1.5227 -4.4828 -0.6928 36 1 5.2221 -3.4016 -3.1416 37 1 3.9027 -3.2062 -4.3203 38 1 3.2690 -5.0203 -5.7933 39 1 3.9798 -7.0628 -6.9577 40 1 5.2523 -7.8418 -9.3153 41 1 7.1787 -7.5331 -4.1094 42 1 6.4351 -5.4905 -2.9658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784107505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:52 Heat of formation + Delta-G solvation = -29.733272 kcal Electronic energy + Delta-G solvation = -25199.364707 eV Core-core repulsion = 21494.863950 eV Total energy + Delta-G solvation = -3704.500756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82496 -40.84825 -39.50995 -37.77323 -35.72335 -35.64298 -34.18753 -32.62798 -31.29133 -31.14591 -29.08765 -28.55282 -26.37432 -25.20899 -23.61379 -22.97315 -22.84699 -21.86807 -20.68312 -19.27488 -18.89842 -17.82317 -17.70475 -17.34765 -17.10098 -17.02901 -16.16619 -15.73431 -15.59493 -15.34876 -15.22496 -14.64464 -14.54837 -14.23758 -13.97389 -13.87252 -13.80365 -13.59647 -13.57448 -13.43785 -13.25583 -12.99768 -12.79852 -12.42523 -12.36492 -12.17669 -11.70983 -11.65427 -11.46029 -11.30723 -11.17516 -11.10313 -10.35868 -10.24361 -9.46350 -9.40250 -9.29173 -8.64023 -6.42846 -0.51929 0.37809 0.62327 0.72893 1.07831 1.38697 1.43716 1.54080 1.94689 2.04650 2.20311 2.74748 2.88782 3.48788 3.63869 3.69344 3.83104 3.87083 3.89929 4.05984 4.06316 4.16685 4.44778 4.46239 4.48314 4.52528 4.59421 4.60277 4.79823 4.82073 4.92674 4.98104 5.02423 5.11993 5.20939 5.26923 5.28264 5.37674 5.40393 5.54732 5.64002 5.81708 5.85285 6.05070 6.11062 6.30502 6.63406 6.79644 6.88622 6.95114 7.07472 8.32319 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032653 B = 0.002115 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.298683 B =13235.205390 C =13453.953509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.028 4.028 3 C -0.186 4.186 4 C 0.090 3.910 5 N -0.533 5.533 6 C 0.154 3.846 7 C -0.147 4.147 8 C 0.012 3.988 9 C -0.195 4.195 10 C 0.475 3.525 11 O -0.533 6.533 12 O -0.352 6.352 13 C 0.144 3.856 14 C -0.222 4.222 15 C -0.084 4.084 16 C -0.184 4.184 17 C 0.086 3.914 18 C -0.493 4.493 19 H 0.079 0.921 20 C 0.030 3.970 21 N -0.830 5.830 22 Si 0.989 3.011 23 H -0.257 1.257 24 H -0.264 1.264 25 H -0.267 1.267 26 C -0.238 4.238 27 C -0.070 4.070 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.128 0.872 34 H 0.194 0.806 35 H 0.175 0.825 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.288 0.712 41 H 0.105 0.895 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 12.710 16.136 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.036 4.036 3 C -0.205 4.205 4 C -0.064 4.064 5 N -0.243 5.243 6 C -0.004 4.004 7 C -0.149 4.149 8 C -0.006 4.006 9 C -0.213 4.213 10 C 0.323 3.677 11 O -0.425 6.425 12 O -0.268 6.268 13 C 0.071 3.929 14 C -0.223 4.223 15 C -0.103 4.103 16 C -0.204 4.204 17 C 0.083 3.917 18 C -0.522 4.522 19 H 0.097 0.903 20 C -0.184 4.184 21 N -0.456 5.456 22 Si 0.809 3.191 23 H -0.180 1.180 24 H -0.188 1.188 25 H -0.191 1.191 26 C -0.258 4.258 27 C -0.088 4.088 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.146 0.854 34 H 0.211 0.789 35 H 0.193 0.807 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.347 13.128 15.783 23.456 hybrid contribution -0.071 -0.564 -1.031 1.178 sum -11.417 12.564 14.752 22.490 Atomic orbital electron populations 1.20947 0.87465 1.04323 1.04506 1.20850 0.98303 0.91479 0.92958 1.22236 0.95046 0.99792 1.03461 1.23239 0.93027 0.96171 0.93957 1.67523 1.42389 0.99381 1.14994 1.22663 0.91459 0.95383 0.90882 1.20075 0.94254 0.95092 1.05477 1.22779 0.95203 0.88465 0.94194 1.22598 0.99639 1.02963 0.96103 1.22328 0.80341 0.82762 0.82238 1.90906 1.59758 1.23189 1.68646 1.86356 1.55143 1.39291 1.46032 1.21033 0.89850 0.94577 0.87454 1.19014 1.01956 1.01161 1.00213 1.20777 0.98176 0.96080 0.95222 1.21326 0.98835 0.97991 1.02211 1.18073 0.89834 0.92592 0.91159 1.19928 1.35056 1.02984 0.94274 0.90263 1.26836 0.91924 1.01737 0.97922 1.69856 1.34249 1.32451 1.09038 0.85059 0.78978 0.76862 0.78196 1.18023 1.18820 1.19141 1.21227 1.02859 0.99771 1.01934 1.20696 0.95792 0.94406 0.97896 0.87961 0.89771 0.90561 0.81791 0.81051 0.85429 0.78929 0.80742 0.91864 0.92313 0.87674 0.87549 0.90088 0.87731 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.67 71.23 0.69 -0.37 16 2 C -0.03 -0.49 5.96 -19.36 -0.12 -0.61 16 3 C -0.19 -3.19 9.80 22.32 0.22 -2.97 16 4 C 0.09 1.98 11.17 84.70 0.95 2.93 16 5 N -0.53 -15.50 10.34 -194.50 -2.01 -17.52 16 6 C 0.15 4.30 7.80 85.12 0.66 4.96 16 7 C -0.15 -3.15 4.52 -20.05 -0.09 -3.24 16 8 C 0.01 0.18 8.47 23.85 0.20 0.39 16 9 C -0.19 -3.86 10.06 23.58 0.24 -3.62 16 10 C 0.47 14.49 6.97 69.90 0.49 14.98 16 11 O -0.53 -18.64 11.91 19.42 0.23 -18.41 16 12 O -0.35 -12.58 10.11 -58.25 -0.59 -13.17 16 13 C 0.14 5.56 5.49 71.24 0.39 5.95 16 14 C -0.22 -9.95 5.53 -19.67 -0.11 -10.05 16 15 C -0.08 -4.03 9.67 22.22 0.21 -3.82 16 16 C -0.18 -9.87 8.66 22.73 0.20 -9.67 16 17 C 0.09 4.69 5.55 -21.29 -0.12 4.58 16 18 C -0.49 -26.61 9.06 23.46 0.21 -26.40 16 19 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 20 C 0.03 1.51 5.26 85.26 0.45 1.96 16 21 N -0.83 -43.59 10.84 21.83 0.24 -43.36 16 22 Si 0.99 38.08 29.57 68.60 2.03 40.11 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 26 C -0.24 -11.88 9.80 22.73 0.22 -11.65 16 27 C -0.07 -3.15 9.67 22.22 0.21 -2.93 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.62 8.10 -2.39 -0.02 0.60 16 30 H 0.08 0.66 7.20 -2.38 -0.02 0.65 16 31 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.13 3.75 7.09 -2.91 -0.02 3.73 16 34 H 0.19 1.08 8.03 -2.91 -0.02 1.05 16 35 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 37 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 38 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.11 5.93 6.23 -2.91 -0.02 5.91 16 40 H 0.29 13.64 8.30 -92.70 -0.77 12.87 16 41 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -70.19 362.62 5.84 -64.35 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 1.03 Total: 27.58 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 4.91 Total: -39.58 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.78 Total: -60.87 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.36 Total: -31.58 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -70.19 5.84 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784107505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.621 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds