Wall clock time and date at job start Tue Mar 31 2020 14:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38029 * 119.94340 * 2 1 4 4 C 1.38087 * 120.33358 * 180.29838 * 3 2 1 5 5 C 1.50708 * 119.90369 * 179.70563 * 4 3 2 6 6 C 1.39771 * 120.19562 * 359.45521 * 4 3 2 7 7 C 1.47824 * 120.06256 * 180.27723 * 6 4 3 8 8 O 1.21557 * 120.00103 * 5.98724 * 7 6 4 9 9 N 1.34777 * 119.99995 * 185.98489 * 7 6 4 10 10 C 1.39118 * 120.00175 * 185.73242 * 9 7 6 11 11 C 1.39512 * 119.83788 * 215.34311 * 10 9 7 12 12 C 1.36366 * 120.16417 * 179.76288 * 11 10 9 13 13 C 1.40884 * 119.82973 * 0.51403 * 12 11 10 14 14 C 1.41139 * 120.15873 * 179.72051 * 13 12 11 15 15 H 1.07996 * 119.99567 * 161.55779 * 14 13 12 16 16 C 1.39913 * 120.00172 * 341.56004 * 14 13 12 17 17 N 1.30874 * 119.99469 * 327.59710 * 16 14 13 18 18 Si 1.86797 * 119.99872 * 147.59995 * 16 14 13 19 19 H 1.48497 * 109.47176 * 94.99047 * 18 16 14 20 20 H 1.48505 * 109.46839 * 214.98762 * 18 16 14 21 21 H 1.48497 * 109.47078 * 334.98761 * 18 16 14 22 22 C 1.40879 * 119.67774 * 359.73707 * 13 12 11 23 23 C 1.36358 * 119.83182 * 0.02562 * 22 13 12 24 24 C 1.39255 * 119.87321 * 0.54153 * 6 4 3 25 25 C 1.39602 * 119.67704 * 359.73514 * 24 6 4 26 26 C 1.47195 * 120.10167 * 180.02562 * 25 24 6 27 27 O 1.21248 * 119.99734 * 359.97264 * 26 25 24 28 28 H 1.08998 * 109.47226 * 89.99517 * 1 2 3 29 29 H 1.08996 * 109.46927 * 209.99511 * 1 2 3 30 30 H 1.09001 * 109.46640 * 329.99866 * 1 2 3 31 31 H 1.08000 * 119.83246 * 0.03054 * 3 2 1 32 32 H 1.08996 * 109.46920 * 98.38739 * 5 4 3 33 33 H 1.09000 * 109.47003 * 218.38624 * 5 4 3 34 34 H 1.09000 * 109.46677 * 338.38241 * 5 4 3 35 35 H 0.97003 * 119.99459 * 5.73715 * 9 7 6 36 36 H 1.07994 * 119.91725 * 0.02764 * 11 10 9 37 37 H 1.07995 * 120.08768 * 180.25737 * 12 11 10 38 38 H 0.97001 * 119.99633 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08275 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.91865 * 179.97438 * 23 22 13 41 41 H 1.08003 * 120.16170 * 179.75118 * 24 6 4 42 42 H 1.07994 * 119.99715 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1960 0.0000 4 6 3.5768 1.2055 -0.0062 5 6 4.3192 2.5170 -0.0129 6 6 4.2880 0.0022 -0.0011 7 6 5.7662 0.0158 -0.0015 8 8 6.3644 1.0688 0.1034 9 7 6.4506 -1.1394 -0.1183 10 6 7.8367 -1.1417 0.0007 11 6 8.5987 -2.0140 -0.7770 12 6 9.9581 -2.0185 -0.6693 13 6 10.5920 -1.1470 0.2381 14 6 11.9982 -1.1500 0.3595 15 1 12.5029 -0.3089 0.8113 16 6 12.7382 -2.2426 -0.1054 17 7 12.2279 -3.4468 -0.0567 18 14 14.4544 -1.9826 -0.7957 19 1 15.4581 -2.2102 0.2747 20 1 14.6908 -2.9384 -1.9074 21 1 14.5784 -0.5925 -1.3031 22 6 9.8156 -0.2727 1.0239 23 6 8.4575 -0.2760 0.9017 24 6 3.6015 -1.2093 -0.0010 25 6 2.2055 -1.2127 -0.0006 26 6 1.4703 -2.4879 0.0000 27 8 2.0772 -3.5375 -0.0004 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3632 0.8900 0.5139 31 1 1.6523 2.1292 0.0005 32 1 4.6331 2.7619 1.0018 33 1 5.1963 2.4347 -0.6547 34 1 3.6650 3.3028 -0.3905 35 1 5.9767 -1.9691 -0.2854 36 1 8.1110 -2.6843 -1.4692 37 1 10.5470 -2.6914 -1.2749 38 1 12.7411 -4.2044 -0.3787 39 1 10.2947 0.3979 1.7218 40 1 7.8608 0.3933 1.5037 41 1 4.1464 -2.1418 -0.0011 42 1 0.3903 -2.4885 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792849343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:09 Heat of formation + Delta-G solvation = -26.638971 kcal Electronic energy + Delta-G solvation = -25584.298448 eV Core-core repulsion = 21879.931871 eV Total energy + Delta-G solvation = -3704.366577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66845 -39.41739 -38.30340 -37.13612 -34.68589 -33.72923 -33.29908 -32.11065 -29.59965 -29.18004 -27.98637 -27.74174 -24.98448 -24.03001 -22.49852 -21.86484 -21.15644 -20.21684 -19.56622 -17.90816 -17.35365 -16.86316 -16.01201 -15.65381 -15.25882 -15.22339 -15.04740 -14.69762 -14.45345 -14.03001 -13.99097 -13.79346 -13.66459 -13.29671 -12.92364 -12.80789 -12.64254 -12.17037 -12.08952 -11.94019 -11.87906 -11.74284 -11.57058 -11.42902 -11.14256 -10.94935 -10.55359 -10.14646 -10.02062 -9.73362 -9.43182 -9.14560 -9.04246 -8.90752 -8.66460 -7.55967 -7.15517 -6.91341 -4.27690 0.33522 0.80714 2.08523 2.62209 2.96812 3.03852 3.09485 3.11126 3.28274 3.65300 3.81430 3.86963 3.92607 4.33672 4.43590 4.50008 4.58640 4.88411 4.97273 5.00418 5.14896 5.27414 5.32183 5.53024 5.57256 5.65566 5.71822 5.81383 5.93369 6.01887 6.12615 6.20483 6.37276 6.43402 6.60898 6.77479 6.93838 6.97865 7.13794 7.13966 7.27671 7.55264 7.68053 7.88196 8.00545 8.22972 8.27940 8.53160 8.72720 8.82295 8.98410 9.98385 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.002584 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.067196 B =10832.817804 C =11809.369031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.014 4.014 3 C -0.148 4.148 4 C 0.014 3.986 5 C -0.125 4.125 6 C -0.147 4.147 7 C 0.539 3.461 8 O -0.524 6.524 9 N -0.640 5.640 10 C -0.024 4.024 11 C -0.100 4.100 12 C -0.173 4.173 13 C 0.111 3.889 14 C -0.460 4.460 15 H 0.082 0.918 16 C 0.086 3.914 17 N -0.766 5.766 18 Si 0.898 3.102 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.225 4.225 23 C -0.063 4.063 24 C -0.021 4.021 25 C -0.213 4.213 26 C 0.381 3.619 27 O -0.458 6.458 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.095 4.620 -1.346 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.015 4.015 3 C -0.166 4.166 4 C 0.012 3.988 5 C -0.181 4.181 6 C -0.151 4.151 7 C 0.327 3.673 8 O -0.403 6.403 9 N -0.283 5.283 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.193 4.193 13 C 0.108 3.892 14 C -0.487 4.487 15 H 0.100 0.900 16 C -0.136 4.136 17 N -0.389 5.389 18 Si 0.721 3.279 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.180 1.180 22 C -0.245 4.245 23 C -0.083 4.083 24 C -0.040 4.040 25 C -0.214 4.214 26 C 0.239 3.761 27 O -0.331 6.331 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.155 0.845 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.299 4.524 -1.282 20.836 hybrid contribution 0.476 -0.423 -0.378 0.741 sum -19.822 4.101 -1.661 20.310 Atomic orbital electron populations 1.20994 0.90461 1.03683 1.03253 1.20252 0.96128 0.92088 0.92982 1.20898 0.93161 0.97846 1.04689 1.20347 0.93299 0.95294 0.89815 1.21168 1.00945 0.91547 1.04414 1.19975 0.93975 0.93428 1.07684 1.18091 0.86184 0.84371 0.78678 1.90721 1.69922 1.29907 1.49734 1.42896 1.06777 1.08816 1.69794 1.17010 0.80116 1.07891 1.06532 1.20171 0.94470 0.99152 0.98262 1.20688 0.92424 1.03852 1.02299 1.17603 0.93027 0.89703 0.88862 1.19546 0.91706 1.02767 1.34724 0.89965 1.25989 1.00638 0.94136 0.92824 1.69951 1.39060 0.99443 1.30423 0.86472 0.81710 0.80148 0.79553 1.19410 1.19839 1.18046 1.20538 0.92658 1.06449 1.04871 1.20180 0.94650 0.97394 0.96066 1.21614 0.93430 0.97738 0.91169 1.20591 0.94304 0.95620 1.10852 1.24073 0.95002 0.86566 0.70420 1.90549 1.73414 1.34514 1.34622 0.90019 0.90802 0.90543 0.84829 0.90020 0.88042 0.92393 0.77234 0.89268 0.87033 0.90514 0.88730 0.88320 0.84515 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 9.51 36.01 0.34 -0.23 16 2 C -0.01 -0.12 5.93 -104.06 -0.62 -0.73 16 3 C -0.15 -1.38 9.28 -39.71 -0.37 -1.75 16 4 C 0.01 0.17 5.92 -104.10 -0.62 -0.45 16 5 C -0.12 -1.53 8.63 36.01 0.31 -1.22 16 6 C -0.15 -2.12 5.87 -105.02 -0.62 -2.74 16 7 C 0.54 9.80 7.40 -12.34 -0.09 9.71 16 8 O -0.52 -10.90 11.19 5.32 0.06 -10.84 16 9 N -0.64 -12.03 5.23 -10.60 -0.06 -12.09 16 10 C -0.02 -0.54 6.24 -83.60 -0.52 -1.06 16 11 C -0.10 -2.36 9.90 -39.78 -0.39 -2.75 16 12 C -0.17 -4.48 8.75 -39.26 -0.34 -4.82 16 13 C 0.11 2.98 5.61 -106.80 -0.60 2.38 16 14 C -0.46 -12.16 8.95 -37.85 -0.34 -12.50 16 15 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 16 C 0.09 2.13 4.82 -17.33 -0.08 2.04 16 17 N -0.77 -19.33 11.53 55.55 0.64 -18.69 16 18 Si 0.90 18.19 29.66 -169.99 -5.04 13.15 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.23 -5.76 9.74 -39.26 -0.38 -6.15 16 23 C -0.06 -1.53 8.57 -39.78 -0.34 -1.87 16 24 C -0.02 -0.26 9.06 -38.70 -0.35 -0.61 16 25 C -0.21 -2.19 5.86 -105.11 -0.62 -2.81 16 26 C 0.38 3.51 10.88 34.37 0.37 3.88 16 27 O -0.46 -6.09 17.16 5.58 0.10 -5.99 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.23 6.31 -51.93 -0.33 -0.09 16 30 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.13 0.90 8.04 -52.49 -0.42 0.48 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.53 5.99 -51.93 -0.31 1.22 16 34 H 0.06 0.54 8.01 -51.93 -0.42 0.12 16 35 H 0.39 6.24 6.93 -40.82 -0.28 5.96 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.11 2.93 6.27 -52.49 -0.33 2.60 16 38 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 39 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.10 2.34 6.57 -52.48 -0.35 1.99 16 41 H 0.14 1.74 6.07 -52.48 -0.32 1.42 16 42 H 0.11 0.51 6.34 -52.49 -0.33 0.18 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -31.34 354.34 -8.97 -40.30 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.75 Total: 10.50 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -5.25 Total: -21.67 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.59 Total: -30.78 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.16 Total: -16.84 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.04 Total: 13.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.34 -8.97 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792849343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.662 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds