Wall clock time and date at job start Tue Mar 31 2020 14:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38029 * 119.94340 * 2 1 4 4 C 1.38087 * 120.33358 * 180.29838 * 3 2 1 5 5 C 1.50708 * 119.90369 * 179.70563 * 4 3 2 6 6 C 1.39771 * 120.19562 * 359.45521 * 4 3 2 7 7 C 1.47824 * 120.06256 * 180.27723 * 6 4 3 8 8 O 1.21557 * 120.00103 * 5.98724 * 7 6 4 9 9 N 1.34777 * 119.99995 * 185.98489 * 7 6 4 10 10 C 1.39118 * 120.00175 * 185.73242 * 9 7 6 11 11 C 1.39512 * 119.83788 * 215.34311 * 10 9 7 12 12 C 1.36366 * 120.16417 * 179.76288 * 11 10 9 13 13 C 1.40884 * 119.82973 * 0.51403 * 12 11 10 14 14 C 1.41139 * 120.15873 * 179.72051 * 13 12 11 15 15 H 1.07996 * 119.99567 * 161.55779 * 14 13 12 16 16 C 1.39913 * 120.00172 * 341.56004 * 14 13 12 17 17 N 1.30874 * 119.99469 * 327.59710 * 16 14 13 18 18 Si 1.86797 * 119.99872 * 147.59995 * 16 14 13 19 19 H 1.48497 * 109.47176 * 94.99047 * 18 16 14 20 20 H 1.48505 * 109.46839 * 214.98762 * 18 16 14 21 21 H 1.48497 * 109.47078 * 334.98761 * 18 16 14 22 22 C 1.40879 * 119.67774 * 359.73707 * 13 12 11 23 23 C 1.36358 * 119.83182 * 0.02562 * 22 13 12 24 24 C 1.39255 * 119.87321 * 0.54153 * 6 4 3 25 25 C 1.39602 * 119.67704 * 359.73514 * 24 6 4 26 26 C 1.47195 * 120.10167 * 180.02562 * 25 24 6 27 27 O 1.21248 * 119.99734 * 359.97264 * 26 25 24 28 28 H 1.08998 * 109.47226 * 89.99517 * 1 2 3 29 29 H 1.08996 * 109.46927 * 209.99511 * 1 2 3 30 30 H 1.09001 * 109.46640 * 329.99866 * 1 2 3 31 31 H 1.08000 * 119.83246 * 0.03054 * 3 2 1 32 32 H 1.08996 * 109.46920 * 98.38739 * 5 4 3 33 33 H 1.09000 * 109.47003 * 218.38624 * 5 4 3 34 34 H 1.09000 * 109.46677 * 338.38241 * 5 4 3 35 35 H 0.97003 * 119.99459 * 5.73715 * 9 7 6 36 36 H 1.07994 * 119.91725 * 0.02764 * 11 10 9 37 37 H 1.07995 * 120.08768 * 180.25737 * 12 11 10 38 38 H 0.97001 * 119.99633 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08275 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.91865 * 179.97438 * 23 22 13 41 41 H 1.08003 * 120.16170 * 179.75118 * 24 6 4 42 42 H 1.07994 * 119.99715 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1960 0.0000 4 6 3.5768 1.2055 -0.0062 5 6 4.3192 2.5170 -0.0129 6 6 4.2880 0.0022 -0.0011 7 6 5.7662 0.0158 -0.0015 8 8 6.3644 1.0688 0.1034 9 7 6.4506 -1.1394 -0.1183 10 6 7.8367 -1.1417 0.0007 11 6 8.5987 -2.0140 -0.7770 12 6 9.9581 -2.0185 -0.6693 13 6 10.5920 -1.1470 0.2381 14 6 11.9982 -1.1500 0.3595 15 1 12.5029 -0.3089 0.8113 16 6 12.7382 -2.2426 -0.1054 17 7 12.2279 -3.4468 -0.0567 18 14 14.4544 -1.9826 -0.7957 19 1 15.4581 -2.2102 0.2747 20 1 14.6908 -2.9384 -1.9074 21 1 14.5784 -0.5925 -1.3031 22 6 9.8156 -0.2727 1.0239 23 6 8.4575 -0.2760 0.9017 24 6 3.6015 -1.2093 -0.0010 25 6 2.2055 -1.2127 -0.0006 26 6 1.4703 -2.4879 0.0000 27 8 2.0772 -3.5375 -0.0004 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3632 0.8900 0.5139 31 1 1.6523 2.1292 0.0005 32 1 4.6331 2.7619 1.0018 33 1 5.1963 2.4347 -0.6547 34 1 3.6650 3.3028 -0.3905 35 1 5.9767 -1.9691 -0.2854 36 1 8.1110 -2.6843 -1.4692 37 1 10.5470 -2.6914 -1.2749 38 1 12.7411 -4.2044 -0.3787 39 1 10.2947 0.3979 1.7218 40 1 7.8608 0.3933 1.5037 41 1 4.1464 -2.1418 -0.0011 42 1 0.3903 -2.4885 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792849343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:09 Heat of formation + Delta-G solvation = -44.124429 kcal Electronic energy + Delta-G solvation = -25585.056675 eV Core-core repulsion = 21879.931871 eV Total energy + Delta-G solvation = -3705.124804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80255 -40.61058 -39.47710 -38.71055 -36.36831 -35.01470 -34.57499 -33.15867 -31.51705 -30.93644 -28.95262 -28.55623 -26.69436 -24.99857 -23.76861 -23.10666 -22.81256 -21.68274 -20.78072 -19.38449 -18.98564 -18.18660 -17.27252 -16.97962 -16.77477 -16.33972 -16.06158 -15.81828 -15.56081 -15.50803 -15.18884 -14.96524 -14.67921 -14.46377 -14.36471 -14.03395 -13.90477 -13.81733 -13.35467 -13.29074 -12.92787 -12.86490 -12.78406 -12.65515 -12.52900 -12.39197 -12.33694 -11.89440 -11.61450 -11.21462 -10.88581 -10.65714 -10.41007 -9.94236 -9.79110 -9.53546 -9.04275 -8.77674 -6.26013 -0.49506 -0.13477 0.81630 1.09302 1.29270 1.36583 1.45052 1.55384 1.96931 2.17230 2.25403 2.58483 2.76932 3.21948 3.56249 3.64273 3.70029 3.75990 3.97197 4.12062 4.31975 4.33321 4.41805 4.57759 4.62972 4.69162 4.77873 4.84381 4.86598 4.92175 5.03756 5.07582 5.08507 5.18293 5.23165 5.31882 5.35679 5.39578 5.50171 5.59188 5.77700 5.83347 5.98496 6.04786 6.29252 6.44801 6.56397 6.64325 6.84715 6.93732 7.29190 8.15655 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.002584 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.067196 B =10832.817804 C =11809.369031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.011 3.989 3 C -0.143 4.143 4 C 0.002 3.998 5 C -0.120 4.120 6 C -0.175 4.175 7 C 0.538 3.462 8 O -0.556 6.556 9 N -0.642 5.642 10 C -0.013 4.013 11 C -0.102 4.102 12 C -0.192 4.192 13 C 0.082 3.918 14 C -0.498 4.498 15 H 0.078 0.922 16 C 0.049 3.951 17 N -0.795 5.795 18 Si 0.976 3.024 19 H -0.258 1.258 20 H -0.261 1.261 21 H -0.261 1.261 22 C -0.244 4.244 23 C -0.072 4.072 24 C -0.031 4.031 25 C -0.223 4.223 26 C 0.391 3.609 27 O -0.505 6.505 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.407 0.593 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.296 0.704 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.701 4.829 -2.077 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 C -0.160 4.160 4 C 0.001 3.999 5 C -0.176 4.176 6 C -0.178 4.178 7 C 0.328 3.672 8 O -0.437 6.437 9 N -0.287 5.287 10 C -0.106 4.106 11 C -0.122 4.122 12 C -0.211 4.211 13 C 0.080 3.920 14 C -0.525 4.525 15 H 0.096 0.904 16 C -0.171 4.171 17 N -0.418 5.418 18 Si 0.795 3.205 19 H -0.182 1.182 20 H -0.185 1.185 21 H -0.185 1.185 22 C -0.264 4.264 23 C -0.092 4.092 24 C -0.050 4.050 25 C -0.224 4.224 26 C 0.252 3.748 27 O -0.380 6.380 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.953 4.726 -2.006 24.497 hybrid contribution 1.313 -0.436 -0.124 1.389 sum -22.639 4.291 -2.130 23.141 Atomic orbital electron populations 1.21194 0.86687 1.05649 1.05049 1.20751 0.98538 0.90607 0.89083 1.21280 0.91642 0.99893 1.03218 1.20506 0.94875 0.94197 0.90327 1.21060 1.00439 0.92978 1.03157 1.19673 0.91237 0.95246 1.11652 1.18790 0.88066 0.83381 0.76941 1.90707 1.71200 1.30920 1.50870 1.42855 1.05200 1.10129 1.70475 1.17093 0.82164 1.06368 1.04937 1.20416 0.93876 0.99477 0.98473 1.20709 0.93431 1.04282 1.02725 1.17917 0.93837 0.90590 0.89698 1.19759 0.92041 1.03703 1.36969 0.90401 1.26824 1.04791 0.93255 0.92227 1.69949 1.41039 1.00317 1.30530 0.85309 0.76246 0.79831 0.79101 1.18192 1.18470 1.18456 1.20679 0.93354 1.07003 1.05385 1.20276 0.94319 0.97940 0.96647 1.21625 0.95016 0.96618 0.91758 1.20936 0.93294 0.97558 1.10592 1.24816 0.96929 0.84936 0.68089 1.90556 1.74635 1.35934 1.36903 0.87941 0.88837 0.88748 0.81323 0.91112 0.91494 0.89004 0.75588 0.86545 0.87840 0.89349 0.88617 0.88269 0.85538 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.33 9.51 71.24 0.68 0.35 16 2 C 0.01 0.13 5.93 -19.50 -0.12 0.02 16 3 C -0.14 -2.13 9.28 22.18 0.21 -1.92 16 4 C 0.00 0.05 5.92 -19.53 -0.12 -0.07 16 5 C -0.12 -2.94 8.63 71.24 0.61 -2.32 16 6 C -0.17 -5.08 5.87 -20.13 -0.12 -5.20 16 7 C 0.54 20.41 7.40 86.78 0.64 21.05 16 8 O -0.56 -24.44 11.19 -3.90 -0.04 -24.49 16 9 N -0.64 -25.03 5.23 -305.72 -1.60 -26.63 16 10 C -0.01 -0.60 6.24 38.60 0.24 -0.36 16 11 C -0.10 -4.95 9.90 22.14 0.22 -4.73 16 12 C -0.19 -10.37 8.75 22.48 0.20 -10.17 16 13 C 0.08 4.67 5.61 -21.27 -0.12 4.55 16 14 C -0.50 -27.55 8.95 23.39 0.21 -27.34 16 15 H 0.08 4.20 8.02 -2.91 -0.02 4.18 16 16 C 0.05 2.47 4.82 85.24 0.41 2.88 16 17 N -0.80 -41.05 11.53 21.82 0.25 -40.79 16 18 Si 0.98 37.80 29.66 68.60 2.03 39.83 16 19 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 20 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.24 -13.27 9.74 22.48 0.22 -13.05 16 23 C -0.07 -3.68 8.57 22.14 0.19 -3.49 16 24 C -0.03 -0.78 9.06 22.84 0.21 -0.57 16 25 C -0.22 -3.98 5.86 -20.18 -0.12 -4.10 16 26 C 0.39 5.89 10.88 70.18 0.76 6.66 16 27 O -0.50 -12.69 17.16 -2.93 -0.05 -12.74 16 28 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.09 -0.06 6.31 -2.39 -0.02 -0.08 16 30 H 0.09 0.02 8.08 -2.39 -0.02 0.00 16 31 H 0.17 1.34 8.04 -2.91 -0.02 1.32 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.12 5.99 -2.39 -0.01 2.11 16 34 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 35 H 0.41 13.38 6.93 -92.71 -0.64 12.74 16 36 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.10 5.66 6.27 -2.91 -0.02 5.64 16 38 H 0.30 13.50 8.30 -92.71 -0.77 12.73 16 39 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 40 H 0.10 4.98 6.57 -2.91 -0.02 4.96 16 41 H 0.13 3.31 6.07 -2.91 -0.02 3.30 16 42 H 0.16 0.62 6.34 -2.91 -0.02 0.61 16 Total: -1.00 -74.24 354.34 5.24 -69.00 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.44 Total: 33.63 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 4.21 Total: -37.81 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.35 Total: -67.42 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.09 Total: -37.22 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -74.24 5.24 -69.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792849343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.872 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds