Wall clock time and date at job start Tue Mar 31 2020 14:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.40262 * 2 1 4 4 C 1.53243 * 109.40482 * 119.84053 * 2 1 3 5 5 S 1.81901 * 108.50457 * 182.12712 * 4 2 1 6 6 O 1.42101 * 109.47054 * 192.85274 * 5 4 2 7 7 C 1.81906 * 101.91093 * 308.69362 * 5 4 2 8 8 C 1.53246 * 108.50626 * 51.30427 * 7 5 4 9 9 N 1.46470 * 109.40509 * 240.16000 * 2 1 3 10 10 C 1.46896 * 110.99997 * 42.11448 * 9 2 1 11 11 C 1.50701 * 109.46930 * 170.00119 * 10 9 2 12 12 C 1.38307 * 119.92800 * 269.72599 * 11 10 9 13 13 C 1.38102 * 120.06637 * 179.72430 * 12 11 10 14 14 C 1.38885 * 119.92994 * 0.56668 * 13 12 11 15 15 O 1.35749 * 120.06901 * 179.67939 * 14 13 12 16 16 C 1.34827 * 116.99936 * 185.91251 * 15 14 13 17 17 H 1.07992 * 120.00145 * 5.22532 * 16 15 14 18 18 C 1.38658 * 119.99660 * 185.22854 * 16 15 14 19 19 N 1.31555 * 120.00392 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99648 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47507 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46947 * 119.99959 * 20 18 16 23 23 H 1.48504 * 109.47314 * 239.99567 * 20 18 16 24 24 C 1.38876 * 119.85937 * 359.70916 * 14 13 12 25 25 C 1.38096 * 119.93662 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46993 * 60.00370 * 1 2 3 27 27 H 1.08992 * 109.47002 * 300.00346 * 1 2 3 28 28 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47424 * 53.94485 * 3 2 1 30 30 H 1.09001 * 109.47443 * 173.94458 * 3 2 1 31 31 H 1.09007 * 109.47402 * 293.94256 * 3 2 1 32 32 H 1.09003 * 109.62846 * 301.82609 * 4 2 1 33 33 H 1.08992 * 109.63180 * 62.22123 * 4 2 1 34 34 H 1.09000 * 109.63130 * 171.01609 * 7 5 4 35 35 H 1.09000 * 109.62703 * 291.60041 * 7 5 4 36 36 H 1.09004 * 109.40255 * 58.11484 * 8 7 5 37 37 H 1.08999 * 109.40916 * 177.87869 * 8 7 5 38 38 H 1.08998 * 109.47480 * 289.99929 * 10 9 2 39 39 H 1.08995 * 109.47753 * 50.00216 * 10 9 2 40 40 H 1.07995 * 119.96548 * 359.97438 * 12 11 10 41 41 H 1.08000 * 120.03322 * 180.27382 * 13 12 11 42 42 H 0.96996 * 120.00467 * 180.02562 * 19 18 16 43 43 H 1.08009 * 120.03091 * 179.97438 * 24 14 13 44 44 H 1.07997 * 119.96737 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0383 1.4431 0.0000 4 6 2.0392 -0.7192 1.2537 5 16 3.8569 -0.6496 1.2612 6 8 4.3614 -1.5512 2.2368 7 6 4.2630 -1.2660 -0.4014 8 6 3.4476 -0.4716 -1.4273 9 7 2.0167 -0.6874 -1.1983 10 6 1.2321 -0.3049 -2.3798 11 6 1.9047 -0.8313 -3.6214 12 6 2.8385 -0.0542 -4.2826 13 6 3.4608 -0.5360 -5.4174 14 6 3.1395 -1.7976 -5.9013 15 8 3.7447 -2.2713 -7.0202 16 6 3.3000 -3.4482 -7.5050 17 1 2.4426 -3.9277 -7.0564 18 6 3.9437 -4.0430 -8.5795 19 7 4.9878 -3.4587 -9.1263 20 14 3.3280 -5.6739 -9.2507 21 1 2.1485 -6.1187 -8.4659 22 1 2.9418 -5.5088 -10.6751 23 1 4.4048 -6.6911 -9.1445 24 6 2.1973 -2.5731 -5.2383 25 6 1.5832 -2.0883 -4.1003 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.5886 1.9867 0.8308 30 1 3.1229 1.4463 0.1084 31 1 1.7657 1.9244 -0.9393 32 1 1.6502 -0.2239 2.1434 33 1 1.7096 -1.7580 1.2393 34 1 5.3271 -1.1282 -0.5933 35 1 4.0093 -2.3237 -0.4718 36 1 3.6754 0.5897 -1.3274 37 1 3.7078 -0.8036 -2.4323 38 1 0.2301 -0.7269 -2.3028 39 1 1.1654 0.7816 -2.4357 40 1 3.0841 0.9288 -3.9087 41 1 4.1930 0.0695 -5.9307 42 1 5.4379 -3.8746 -9.8782 43 1 1.9450 -3.5544 -5.6124 44 1 0.8508 -2.6911 -3.5841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794564810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:24 Heat of formation + Delta-G solvation = -21.681750 kcal Electronic energy + Delta-G solvation = -25539.945148 eV Core-core repulsion = 21971.237483 eV Total energy + Delta-G solvation = -3568.707665 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.05787 -38.80414 -36.61967 -35.70692 -33.43817 -32.39578 -31.54251 -30.23061 -28.59729 -27.74870 -27.58681 -25.62156 -24.20849 -22.93627 -21.88878 -20.52564 -18.94796 -18.05426 -17.47671 -17.01628 -16.45829 -15.91232 -15.33996 -15.05364 -14.82870 -14.56492 -14.53210 -14.20153 -14.02642 -13.66050 -13.59386 -13.15774 -12.79047 -12.75504 -12.63011 -12.46085 -12.42258 -12.10102 -11.96164 -11.74700 -11.59027 -11.44216 -11.34632 -11.25339 -10.83816 -10.79428 -10.67532 -10.54881 -10.44906 -9.84400 -9.40833 -8.87604 -8.34642 -8.28418 -8.20072 -7.21724 -6.50198 -4.08698 1.50334 2.13063 2.20818 2.41333 3.09078 3.11285 3.16658 3.63264 3.77063 3.92818 4.46216 4.55439 4.68557 4.81762 4.88270 5.05724 5.08110 5.10381 5.18140 5.21062 5.31192 5.36705 5.42120 5.49569 5.55009 5.59966 5.66625 5.73632 5.77534 5.86007 5.93125 5.97101 6.07641 6.13911 6.16079 6.38085 6.62872 6.83982 6.98684 6.99321 7.12412 7.22601 7.34601 7.39070 7.75840 7.94932 8.95732 9.64958 10.67716 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.002891 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.573499 B = 9683.202162 C =10083.819208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.132 3.868 3 C -0.192 4.192 4 C -0.419 4.419 5 S 1.216 4.784 6 O -0.866 6.866 7 C -0.425 4.425 8 C 0.061 3.939 9 N -0.541 5.541 10 C 0.117 3.883 11 C -0.190 4.190 12 C -0.069 4.069 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.236 4.236 25 C -0.049 4.049 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 11.564 17.032 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.042 3.958 3 C -0.251 4.251 4 C -0.557 4.557 5 S 1.417 4.583 6 O -0.861 6.861 7 C -0.564 4.564 8 C -0.067 4.067 9 N -0.266 5.266 10 C -0.009 4.009 11 C -0.192 4.192 12 C -0.088 4.088 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.080 6.080 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.255 4.255 25 C -0.068 4.068 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.905 11.374 17.537 21.720 hybrid contribution -0.950 -2.326 -0.806 2.639 sum -6.855 9.048 16.730 20.218 Atomic orbital electron populations 1.22005 0.93327 1.02679 1.02087 1.20521 0.95740 0.90918 0.88669 1.22633 1.02011 0.97022 1.03418 1.27602 1.19673 1.06310 1.02097 1.70332 0.87081 1.16752 0.84159 1.93096 1.72540 1.69268 1.51176 1.27538 1.05933 1.08338 1.14554 1.21988 0.86321 0.97751 1.00670 1.61541 1.03451 1.58705 1.02884 1.20845 0.96385 0.97391 0.86277 1.19111 1.04067 0.96889 0.99092 1.20498 0.95641 0.98105 0.94540 1.20177 1.05860 0.95386 0.99867 1.19420 0.91084 0.92478 0.86825 1.83986 1.53555 1.36613 1.33808 1.21375 1.13728 0.97082 1.14559 0.89013 1.25296 0.95634 0.99435 0.96124 1.70039 1.18787 1.38363 1.22376 0.85652 0.78768 0.80110 0.78951 1.19078 1.20080 1.20108 1.21175 1.03099 1.02033 0.99187 1.20577 0.97535 0.94239 0.94482 0.91728 0.92121 0.91860 0.91153 0.91385 0.91317 0.86888 0.88661 0.86672 0.88648 0.92891 0.87432 0.90466 0.94230 0.87235 0.86530 0.92004 0.85656 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.61 37.16 0.28 -0.83 16 2 C 0.13 1.11 0.70 -131.71 -0.09 1.02 16 3 C -0.19 -1.15 7.32 37.15 0.27 -0.88 16 4 C -0.42 -3.76 5.48 37.28 0.20 -3.56 16 5 S 1.22 11.81 12.19 -107.50 -1.31 10.50 16 6 O -0.87 -14.24 18.14 -35.23 -0.64 -14.88 16 7 C -0.42 -4.73 6.67 37.28 0.25 -4.48 16 8 C 0.06 0.67 4.61 -3.91 -0.02 0.65 16 9 N -0.54 -5.95 4.41 -220.75 -0.97 -6.92 16 10 C 0.12 1.36 4.05 -4.98 -0.02 1.34 16 11 C -0.19 -2.91 4.11 -104.57 -0.43 -3.33 16 12 C -0.07 -1.09 7.59 -39.61 -0.30 -1.39 16 13 C -0.19 -3.81 9.99 -39.39 -0.39 -4.20 16 14 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 15 O -0.18 -4.93 9.76 0.06 0.00 -4.93 16 16 C -0.39 -10.78 9.44 30.89 0.29 -10.49 16 17 H 0.09 2.35 5.29 -52.49 -0.28 2.08 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 20 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.24 -4.96 9.13 -39.40 -0.36 -5.32 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 26 H 0.06 0.48 6.44 -51.93 -0.33 0.15 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.32 5.10 -51.93 -0.26 0.05 16 31 H 0.07 0.43 6.75 -51.92 -0.35 0.08 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.44 5.70 -51.93 -0.30 0.14 16 37 H 0.11 1.48 4.77 -51.93 -0.25 1.23 16 38 H 0.08 0.88 6.86 -51.93 -0.36 0.52 16 39 H 0.04 0.40 6.46 -51.93 -0.34 0.07 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.13 2.71 5.72 -52.48 -0.30 2.41 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -34.98 350.14 -9.09 -44.07 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.13 Total: 4.10 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -1.05 Total: -28.37 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: -0.21 Total: -31.10 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.64 Total: -19.81 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 11.81 SS G_CDS: -1.31 Total: 10.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.98 -9.09 -44.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794564810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.386 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds