Wall clock time and date at job start Tue Mar 31 2020 14:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.34283 * 2 1 4 4 C 1.53248 * 109.40519 * 119.80395 * 2 1 3 5 5 S 1.81896 * 108.50447 * 58.11835 * 4 2 1 6 6 O 1.42100 * 109.47176 * 167.14770 * 5 4 2 7 7 C 1.81898 * 101.91736 * 51.30307 * 5 4 2 8 8 C 1.53246 * 108.50385 * 308.69307 * 7 5 4 9 9 N 1.46466 * 109.40565 * 240.20117 * 2 1 3 10 10 C 1.46903 * 111.00267 * 77.64375 * 9 2 1 11 11 C 1.50701 * 109.47298 * 173.69653 * 10 9 2 12 12 C 1.38309 * 119.92839 * 276.12179 * 11 10 9 13 13 C 1.38097 * 120.06726 * 179.72609 * 12 11 10 14 14 C 1.38881 * 119.92839 * 0.54484 * 13 12 11 15 15 O 1.35752 * 120.07045 * 179.74595 * 14 13 12 16 16 C 1.34827 * 117.00181 * 185.25410 * 15 14 13 17 17 H 1.07991 * 120.00209 * 5.45703 * 16 15 14 18 18 C 1.38653 * 119.99752 * 185.45118 * 16 15 14 19 19 N 1.31555 * 120.00357 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99770 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47426 * 60.00353 * 20 18 16 22 22 H 1.48505 * 109.47437 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47499 * 300.00148 * 20 18 16 24 24 C 1.38882 * 119.86602 * 359.72940 * 14 13 12 25 25 C 1.38106 * 119.92712 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.47086 * 302.29395 * 1 2 3 27 27 H 1.09001 * 109.47468 * 62.29054 * 1 2 3 28 28 H 1.08998 * 109.47367 * 182.29445 * 1 2 3 29 29 H 1.08994 * 109.47456 * 186.71624 * 3 2 1 30 30 H 1.08998 * 109.47367 * 306.72324 * 3 2 1 31 31 H 1.09003 * 109.46492 * 66.71678 * 3 2 1 32 32 H 1.09000 * 109.63379 * 298.40805 * 4 2 1 33 33 H 1.09003 * 109.62994 * 177.82166 * 4 2 1 34 34 H 1.08996 * 109.63234 * 188.98984 * 7 5 4 35 35 H 1.08995 * 109.79532 * 68.49867 * 7 5 4 36 36 H 1.09006 * 109.40522 * 182.11965 * 8 7 5 37 37 H 1.08993 * 109.41215 * 301.88433 * 8 7 5 38 38 H 1.08994 * 109.47131 * 293.70086 * 10 9 2 39 39 H 1.09004 * 109.46578 * 53.69494 * 10 9 2 40 40 H 1.08000 * 119.96745 * 359.97438 * 12 11 10 41 41 H 1.07997 * 120.03794 * 180.26494 * 13 12 11 42 42 H 0.97003 * 119.99999 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.03853 * 179.97438 * 24 14 13 44 44 H 1.07995 * 119.96371 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0367 1.4436 0.0000 4 6 2.0391 -0.7184 1.2542 5 16 1.3716 -2.4105 1.2614 6 8 2.0545 -3.1850 2.2376 7 6 1.8198 -2.9981 -0.4007 8 6 1.3407 -1.9658 -1.4271 9 7 2.0166 -0.6865 -1.1988 10 6 1.9147 0.1808 -2.3801 11 6 2.5638 -0.4977 -3.5589 12 6 3.9313 -0.4023 -3.7430 13 6 4.5298 -1.0275 -4.8190 14 6 3.7557 -1.7432 -5.7230 15 8 4.3404 -2.3546 -6.7847 16 6 3.5212 -2.9396 -7.6817 17 1 2.4509 -2.8331 -7.5854 18 6 4.0531 -3.6779 -8.7279 19 7 5.3569 -3.8081 -8.8450 20 14 2.9182 -4.4878 -9.9710 21 1 2.1000 -3.4480 -10.6454 22 1 3.7286 -5.2134 -10.9821 23 1 2.0237 -5.4464 -9.2738 24 6 2.3820 -1.8323 -5.5386 25 6 1.7902 -1.2099 -4.4571 26 1 -0.3633 0.5491 0.8687 27 1 -0.3634 0.4778 -0.9098 28 1 -0.3634 -1.0268 0.0411 29 1 3.1200 1.4485 -0.1202 30 1 1.5773 1.9900 -0.8237 31 1 1.7737 1.9209 0.9440 32 1 1.7001 -0.1872 2.1436 33 1 3.1284 -0.7545 1.2388 34 1 1.3374 -3.9564 -0.5928 35 1 2.9014 -3.1116 -0.4729 36 1 1.5686 -2.3215 -2.4320 37 1 0.2640 -1.8292 -1.3280 38 1 0.8646 0.3698 -2.6026 39 1 2.4199 1.1260 -2.1814 40 1 4.5322 0.1584 -3.0422 41 1 5.5982 -0.9563 -4.9599 42 1 5.7289 -4.3249 -9.5768 43 1 1.7773 -2.3878 -6.2401 44 1 0.7222 -1.2792 -4.3129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794564811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:27 Heat of formation + Delta-G solvation = -22.824316 kcal Electronic energy + Delta-G solvation = -25480.943125 eV Core-core repulsion = 21912.185914 eV Total energy + Delta-G solvation = -3568.757210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.97212 -38.80391 -36.57015 -35.72270 -33.46403 -32.39731 -31.55247 -30.20847 -28.58381 -27.75251 -27.62242 -25.58958 -24.19664 -22.90865 -21.89546 -20.51633 -18.99465 -18.00544 -17.51206 -17.00150 -16.44986 -15.88616 -15.36362 -15.11793 -14.85341 -14.59206 -14.44661 -14.16891 -14.04762 -13.59328 -13.44463 -13.40194 -12.94271 -12.71502 -12.53171 -12.48460 -12.27560 -12.11929 -11.96525 -11.79145 -11.59484 -11.47310 -11.31336 -11.23551 -10.90909 -10.70137 -10.66294 -10.57069 -10.44356 -9.88268 -9.39211 -8.85416 -8.36113 -8.30449 -8.17308 -7.20524 -6.47873 -4.06965 1.48855 2.18101 2.23998 2.39396 3.10722 3.11312 3.14763 3.62224 3.75443 3.93996 4.45047 4.57036 4.68428 4.78935 4.85112 5.04644 5.06930 5.09402 5.18623 5.24869 5.33281 5.35542 5.42309 5.47260 5.53948 5.57165 5.68567 5.71811 5.78219 5.87049 5.90826 5.95891 6.00286 6.10911 6.19100 6.39895 6.67824 6.85822 6.96961 7.02093 7.13541 7.24860 7.36397 7.41476 7.80068 7.96719 8.97501 9.67839 10.70037 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.002898 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.239838 B = 9659.259884 C =10157.074287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.132 3.868 3 C -0.143 4.143 4 C -0.419 4.419 5 S 1.217 4.783 6 O -0.865 6.865 7 C -0.426 4.426 8 C 0.067 3.933 9 N -0.541 5.541 10 C 0.114 3.886 11 C -0.184 4.184 12 C -0.051 4.051 13 C -0.195 4.195 14 C 0.156 3.844 15 O -0.177 6.177 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.235 4.235 25 C -0.067 4.067 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 8.696 16.411 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.042 3.958 3 C -0.201 4.201 4 C -0.557 4.557 5 S 1.418 4.582 6 O -0.860 6.860 7 C -0.565 4.565 8 C -0.062 4.062 9 N -0.265 5.265 10 C -0.012 4.012 11 C -0.186 4.186 12 C -0.070 4.070 13 C -0.215 4.215 14 C 0.102 3.898 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.254 4.254 25 C -0.086 4.086 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.209 7.928 17.016 22.954 hybrid contribution 0.962 -0.356 -1.128 1.525 sum -12.247 7.571 15.888 21.442 Atomic orbital electron populations 1.22649 0.96323 1.02778 1.03416 1.20510 0.92568 0.94086 0.88662 1.22018 1.02207 0.93943 1.01922 1.27601 1.09225 1.16810 1.02064 1.70321 1.17756 0.86075 0.84071 1.93101 1.77337 1.64481 1.51074 1.27538 1.08733 1.05548 1.14645 1.21820 0.96187 0.87974 1.00204 1.61444 1.57896 1.04259 1.02940 1.20879 0.98153 0.95197 0.87003 1.19086 0.93983 1.07104 0.98379 1.20436 0.93700 0.97343 0.95472 1.20221 0.99462 1.04496 0.97307 1.19419 0.91349 0.91237 0.87801 1.83995 1.35156 1.60748 1.28144 1.21264 0.90086 1.31323 1.04212 0.89144 1.25294 0.96612 0.96650 0.97937 1.70028 1.10524 1.38014 1.31101 0.85790 0.79058 0.79243 0.79393 1.19467 1.20262 1.19495 1.21125 0.95048 1.07702 1.01521 1.20605 0.97968 0.96057 0.93936 0.91138 0.91412 0.91321 0.91622 0.91810 0.92115 0.86850 0.88576 0.86720 0.88506 0.88285 0.92851 0.94501 0.89957 0.87196 0.86697 0.91923 0.85645 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 7.36 37.16 0.27 -0.83 16 2 C 0.13 1.09 0.70 -131.71 -0.09 1.00 16 3 C -0.14 -1.09 7.29 37.16 0.27 -0.82 16 4 C -0.42 -3.71 5.48 37.29 0.20 -3.50 16 5 S 1.22 11.56 12.26 -107.50 -1.32 10.24 16 6 O -0.86 -14.10 18.14 -35.23 -0.64 -14.74 16 7 C -0.43 -4.63 6.67 37.28 0.25 -4.38 16 8 C 0.07 0.71 5.01 -3.93 -0.02 0.69 16 9 N -0.54 -5.87 4.29 -220.77 -0.95 -6.82 16 10 C 0.11 1.32 4.22 -4.97 -0.02 1.30 16 11 C -0.18 -2.87 4.56 -104.57 -0.48 -3.34 16 12 C -0.05 -0.88 9.72 -39.61 -0.38 -1.26 16 13 C -0.20 -4.08 9.99 -39.40 -0.39 -4.47 16 14 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 15 O -0.18 -5.02 9.76 0.05 0.00 -5.02 16 16 C -0.39 -10.84 9.45 30.89 0.29 -10.55 16 17 H 0.09 2.29 5.28 -52.49 -0.28 2.01 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 20 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.23 -4.86 9.14 -39.39 -0.36 -5.22 16 25 C -0.07 -1.12 7.95 -39.61 -0.32 -1.43 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.40 7.06 -51.93 -0.37 0.04 16 28 H 0.07 0.30 5.01 -51.93 -0.26 0.04 16 29 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.06 0.46 6.67 -51.93 -0.35 0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.10 1.30 5.33 -51.93 -0.28 1.02 16 37 H 0.05 0.41 5.62 -51.93 -0.29 0.12 16 38 H 0.04 0.38 7.04 -51.93 -0.37 0.02 16 39 H 0.08 0.89 5.88 -51.93 -0.31 0.59 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 43 H 0.13 2.62 5.70 -52.49 -0.30 2.32 16 44 H 0.10 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -35.46 351.67 -9.15 -44.60 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.15 Total: 4.07 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: -1.13 Total: -28.42 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: -0.19 Total: -31.26 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.64 Total: -19.76 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 11.56 SS G_CDS: -1.32 Total: 10.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.46 -9.15 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794564811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.778 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds