Wall clock time and date at job start Tue Mar 31 2020 13:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86810 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47085 * 240.00051 * 3 2 1 5 5 H 1.48496 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46974 * 120.00024 * 3 2 1 7 7 C 1.39938 * 120.00602 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00642 * 162.59985 * 7 2 1 9 9 C 1.41398 * 119.99800 * 342.88003 * 7 2 1 10 10 C 1.40733 * 120.24189 * 334.97856 * 9 7 2 11 11 C 1.37600 * 119.74446 * 179.79314 * 10 9 7 12 12 C 1.38658 * 120.24537 * 0.48471 * 11 10 9 13 13 C 1.38610 * 120.50764 * 359.74764 * 12 11 10 14 14 S 1.76196 * 119.87972 * 179.97438 * 13 12 11 15 15 O 1.42098 * 106.40083 * 23.56351 * 14 13 12 16 16 O 1.42106 * 106.40226 * 156.47725 * 14 13 12 17 17 N 1.65589 * 107.22082 * 270.01978 * 14 13 12 18 18 C 1.46969 * 120.36448 * 96.98566 * 17 14 13 19 19 C 1.52873 * 108.81226 * 68.62025 * 18 17 14 20 20 C 1.53805 * 109.26238 * 72.59368 * 19 18 17 21 21 C 1.52445 * 109.40145 * 282.12068 * 20 19 18 22 22 C 1.53946 * 110.73090 * 113.72757 * 21 20 19 23 23 C 1.52881 * 109.73198 * 315.63222 * 22 21 20 24 24 C 1.45333 * 120.37080 * 277.26548 * 17 14 13 25 25 C 1.37640 * 120.24238 * 0.02562 * 13 12 11 26 26 H 0.96990 * 120.00226 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.12717 * 0.02562 * 10 9 7 28 28 H 1.07995 * 119.87794 * 180.25290 * 11 10 9 29 29 H 1.08001 * 119.74542 * 179.72079 * 12 11 10 30 30 H 1.09006 * 109.53284 * 188.24472 * 18 17 14 31 31 H 1.09000 * 109.53163 * 308.46651 * 18 17 14 32 32 H 1.08997 * 109.50985 * 312.63291 * 19 18 17 33 33 H 1.09006 * 109.43768 * 192.50808 * 19 18 17 34 34 H 1.08998 * 109.47718 * 162.14441 * 20 19 18 35 35 H 1.08994 * 109.49090 * 42.10575 * 20 19 18 36 36 H 1.09005 * 109.22605 * 353.40726 * 21 20 19 37 37 H 1.08999 * 109.18882 * 234.03198 * 21 20 19 38 38 H 1.09007 * 109.42884 * 195.55661 * 22 21 20 39 39 H 1.08997 * 109.42793 * 75.71337 * 22 21 20 40 40 H 1.09002 * 109.48638 * 167.12491 * 23 22 21 41 41 H 1.09002 * 109.49863 * 47.08585 * 23 22 21 42 42 H 1.09000 * 109.66959 * 343.07357 * 24 17 14 43 43 H 1.08997 * 109.67829 * 103.60923 * 24 17 14 44 44 H 1.08005 * 120.12872 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2331 -0.2802 9 6 1.3481 -2.4094 0.3594 10 6 0.2154 -2.3714 1.1937 11 6 -0.4214 -3.5427 1.5341 12 6 0.0549 -4.7580 1.0665 13 6 1.1725 -4.8079 0.2481 14 16 1.7640 -6.3614 -0.3361 15 8 0.6581 -7.2528 -0.2956 16 8 2.5008 -6.0905 -1.5207 17 7 2.8559 -6.9201 0.7763 18 6 2.4405 -7.8823 1.8067 19 6 2.1282 -9.2196 1.1351 20 6 3.4426 -9.8839 0.6916 21 6 3.9378 -9.2215 -0.5891 22 6 5.2555 -8.4663 -0.3377 23 6 5.1536 -7.6693 0.9630 24 6 4.2342 -6.4598 0.7484 25 6 1.8226 -3.6485 -0.1089 26 1 -0.4850 0.8399 0.0004 27 1 -0.1548 -1.4262 1.5623 28 1 -1.2933 -3.5157 2.1709 29 1 -0.4485 -5.6728 1.3423 30 1 3.2482 -8.0171 2.5262 31 1 1.5538 -7.5082 2.3184 32 1 1.4938 -9.0506 0.2650 33 1 1.6124 -9.8691 1.8424 34 1 3.2703 -10.9446 0.5091 35 1 4.1916 -9.7666 1.4746 36 1 3.1838 -8.5192 -0.9446 37 1 4.1017 -9.9867 -1.3479 38 1 5.4466 -7.7847 -1.1665 39 1 6.0744 -9.1816 -0.2613 40 1 6.1451 -7.3248 1.2569 41 1 4.7420 -8.3043 1.7475 42 1 4.4487 -6.0024 -0.2174 43 1 4.3941 -5.7316 1.5435 44 1 2.6936 -3.6895 -0.7463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795059947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:21 Heat of formation + Delta-G solvation = -61.053692 kcal Electronic energy + Delta-G solvation = -26493.408817 eV Core-core repulsion = 22922.993857 eV Total energy + Delta-G solvation = -3570.414960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.00065 -37.63210 -36.75264 -35.27680 -34.00017 -33.82802 -33.02729 -30.07652 -29.78112 -27.82427 -26.39818 -25.48005 -22.43514 -22.19380 -21.75878 -20.97976 -19.69208 -18.63178 -17.57767 -17.12264 -16.16762 -15.99959 -15.53822 -15.19703 -14.77965 -14.62758 -14.31483 -13.76003 -13.55025 -13.39050 -13.36377 -13.29023 -12.75935 -12.57234 -12.01462 -11.92147 -11.71520 -11.42882 -11.39621 -11.35545 -11.32883 -11.13468 -11.06117 -10.98186 -10.91520 -10.84236 -10.65172 -10.61813 -10.51455 -10.07100 -9.76257 -9.56193 -9.34935 -8.59628 -8.02663 -7.69994 -6.91703 -4.53831 1.00876 2.20550 2.63952 2.99293 3.01411 3.07628 3.50676 3.82713 4.24607 4.40901 4.68991 4.76205 4.89147 4.97128 5.05886 5.10806 5.18200 5.30904 5.42082 5.50640 5.62450 5.66114 5.76380 5.81877 5.89419 5.95049 6.04483 6.08737 6.11752 6.13418 6.18521 6.24518 6.36988 6.42976 6.55934 6.64620 6.74686 6.79721 6.97135 7.05802 7.22454 7.38623 7.72541 7.80031 7.94257 8.39677 8.67011 8.71739 10.03971 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.003884 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.110242 B = 7208.126064 C = 7847.722715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.082 0.918 9 C 0.092 3.908 10 C -0.117 4.117 11 C -0.122 4.122 12 C -0.147 4.147 13 C -0.634 4.634 14 S 2.686 3.314 15 O -0.971 6.971 16 O -0.969 6.969 17 N -0.995 5.995 18 C 0.128 3.872 19 C -0.160 4.160 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.140 4.140 24 C 0.116 3.884 25 C -0.128 4.128 26 H 0.284 0.716 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -12.373 4.813 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.100 0.900 9 C 0.089 3.911 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.168 4.168 13 C -0.725 4.725 14 S 2.783 3.217 15 O -0.961 6.961 16 O -0.960 6.960 17 N -0.832 5.832 18 C 0.003 3.997 19 C -0.199 4.199 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.179 4.179 24 C -0.009 4.009 25 C -0.150 4.150 26 H 0.095 0.905 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.934 -12.660 4.013 14.982 hybrid contribution 0.125 1.522 0.416 1.583 sum 7.059 -11.137 4.429 13.910 Atomic orbital electron populations 1.69767 1.07667 1.29745 1.34795 1.25934 0.94783 1.01543 0.92046 0.86289 0.80109 0.79805 0.80138 1.18792 1.20226 1.18706 1.19573 0.98160 0.90913 1.40437 0.89982 1.17678 0.91862 0.92012 0.89569 1.21646 0.97513 0.97068 0.97478 1.20819 0.99296 0.93203 1.00797 1.20079 0.97178 0.97434 1.02094 1.29864 1.08978 1.18096 1.15604 1.01881 0.72510 0.74133 0.73132 1.93467 1.52321 1.63747 1.86604 1.93518 1.72391 1.86198 1.43866 1.57455 1.20753 1.56303 1.48730 1.21365 1.00359 0.87844 0.90122 1.22548 0.97864 0.96431 1.03017 1.21788 0.97283 0.98891 0.97916 1.21703 0.97562 0.99029 0.97442 1.21746 0.97031 0.98906 0.97876 1.22244 0.99424 0.97403 0.98819 1.21315 0.80275 0.96168 1.03186 1.20740 1.01080 0.91806 1.01340 0.90487 0.85730 0.88368 0.87666 0.89661 0.91041 0.88997 0.90960 0.92388 0.91150 0.92805 0.92476 0.91456 0.92309 0.91255 0.89955 0.89132 0.91771 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 10.95 55.55 0.61 -19.32 16 2 C 0.08 1.82 5.15 -17.35 -0.09 1.73 16 3 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.86 9.05 -37.74 -0.34 -12.21 16 8 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.09 2.40 5.57 -106.82 -0.60 1.81 16 10 C -0.12 -2.94 8.69 -38.87 -0.34 -3.28 16 11 C -0.12 -2.77 10.02 -39.66 -0.40 -3.17 16 12 C -0.15 -3.25 9.53 -39.29 -0.37 -3.62 16 13 C -0.63 -14.19 5.96 -39.66 -0.24 -14.43 16 14 S 2.69 51.96 4.48 -107.50 -0.48 51.48 16 15 O -0.97 -19.75 14.19 -57.17 -0.81 -20.56 16 16 O -0.97 -20.76 15.68 -57.17 -0.90 -21.66 16 17 N -1.00 -14.79 1.84 -114.71 -0.21 -15.00 16 18 C 0.13 1.58 5.36 -3.85 -0.02 1.56 16 19 C -0.16 -1.92 5.52 -26.38 -0.15 -2.07 16 20 C -0.12 -1.27 5.49 -26.60 -0.15 -1.42 16 21 C -0.12 -1.46 5.40 -26.52 -0.14 -1.60 16 22 C -0.12 -1.28 5.75 -26.30 -0.15 -1.43 16 23 C -0.14 -1.44 5.45 -26.57 -0.14 -1.58 16 24 C 0.12 1.53 6.13 -4.44 -0.03 1.50 16 25 C -0.13 -3.13 9.26 -38.87 -0.36 -3.49 16 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 27 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 28 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 30 H 0.09 0.82 6.08 -51.93 -0.32 0.51 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.37 5.20 -51.93 -0.27 1.10 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.63 5.48 -51.93 -0.28 0.35 16 36 H 0.05 0.80 5.03 -51.93 -0.26 0.54 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.76 3.35 -51.93 -0.17 0.59 16 42 H 0.09 1.30 6.69 -51.93 -0.35 0.95 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.11 2.56 7.60 -52.48 -0.40 2.16 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -29.61 342.72 -11.28 -40.90 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.11 Total: 7.69 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: -3.51 Total: -41.70 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.40 Total: -34.32 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.71 Total: -42.22 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.48 Total: 51.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.61 -11.28 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795059947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.157 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds