Wall clock time and date at job start Tue Mar 31 2020 13:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86810 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47085 * 240.00051 * 3 2 1 5 5 H 1.48496 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46974 * 120.00024 * 3 2 1 7 7 C 1.39938 * 120.00602 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00642 * 162.59985 * 7 2 1 9 9 C 1.41398 * 119.99800 * 342.88003 * 7 2 1 10 10 C 1.40733 * 120.24189 * 334.97856 * 9 7 2 11 11 C 1.37600 * 119.74446 * 179.79314 * 10 9 7 12 12 C 1.38658 * 120.24537 * 0.48471 * 11 10 9 13 13 C 1.38610 * 120.50764 * 359.74764 * 12 11 10 14 14 S 1.76196 * 119.87972 * 179.97438 * 13 12 11 15 15 O 1.42098 * 106.40083 * 23.56351 * 14 13 12 16 16 O 1.42106 * 106.40226 * 156.47725 * 14 13 12 17 17 N 1.65589 * 107.22082 * 270.01978 * 14 13 12 18 18 C 1.46969 * 120.36448 * 96.98566 * 17 14 13 19 19 C 1.52873 * 108.81226 * 68.62025 * 18 17 14 20 20 C 1.53805 * 109.26238 * 72.59368 * 19 18 17 21 21 C 1.52445 * 109.40145 * 282.12068 * 20 19 18 22 22 C 1.53946 * 110.73090 * 113.72757 * 21 20 19 23 23 C 1.52881 * 109.73198 * 315.63222 * 22 21 20 24 24 C 1.45333 * 120.37080 * 277.26548 * 17 14 13 25 25 C 1.37640 * 120.24238 * 0.02562 * 13 12 11 26 26 H 0.96990 * 120.00226 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.12717 * 0.02562 * 10 9 7 28 28 H 1.07995 * 119.87794 * 180.25290 * 11 10 9 29 29 H 1.08001 * 119.74542 * 179.72079 * 12 11 10 30 30 H 1.09006 * 109.53284 * 188.24472 * 18 17 14 31 31 H 1.09000 * 109.53163 * 308.46651 * 18 17 14 32 32 H 1.08997 * 109.50985 * 312.63291 * 19 18 17 33 33 H 1.09006 * 109.43768 * 192.50808 * 19 18 17 34 34 H 1.08998 * 109.47718 * 162.14441 * 20 19 18 35 35 H 1.08994 * 109.49090 * 42.10575 * 20 19 18 36 36 H 1.09005 * 109.22605 * 353.40726 * 21 20 19 37 37 H 1.08999 * 109.18882 * 234.03198 * 21 20 19 38 38 H 1.09007 * 109.42884 * 195.55661 * 22 21 20 39 39 H 1.08997 * 109.42793 * 75.71337 * 22 21 20 40 40 H 1.09002 * 109.48638 * 167.12491 * 23 22 21 41 41 H 1.09002 * 109.49863 * 47.08585 * 23 22 21 42 42 H 1.09000 * 109.66959 * 343.07357 * 24 17 14 43 43 H 1.08997 * 109.67829 * 103.60923 * 24 17 14 44 44 H 1.08005 * 120.12872 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2331 -0.2802 9 6 1.3481 -2.4094 0.3594 10 6 0.2154 -2.3714 1.1937 11 6 -0.4214 -3.5427 1.5341 12 6 0.0549 -4.7580 1.0665 13 6 1.1725 -4.8079 0.2481 14 16 1.7640 -6.3614 -0.3361 15 8 0.6581 -7.2528 -0.2956 16 8 2.5008 -6.0905 -1.5207 17 7 2.8559 -6.9201 0.7763 18 6 2.4405 -7.8823 1.8067 19 6 2.1282 -9.2196 1.1351 20 6 3.4426 -9.8839 0.6916 21 6 3.9378 -9.2215 -0.5891 22 6 5.2555 -8.4663 -0.3377 23 6 5.1536 -7.6693 0.9630 24 6 4.2342 -6.4598 0.7484 25 6 1.8226 -3.6485 -0.1089 26 1 -0.4850 0.8399 0.0004 27 1 -0.1548 -1.4262 1.5623 28 1 -1.2933 -3.5157 2.1709 29 1 -0.4485 -5.6728 1.3423 30 1 3.2482 -8.0171 2.5262 31 1 1.5538 -7.5082 2.3184 32 1 1.4938 -9.0506 0.2650 33 1 1.6124 -9.8691 1.8424 34 1 3.2703 -10.9446 0.5091 35 1 4.1916 -9.7666 1.4746 36 1 3.1838 -8.5192 -0.9446 37 1 4.1017 -9.9867 -1.3479 38 1 5.4466 -7.7847 -1.1665 39 1 6.0744 -9.1816 -0.2613 40 1 6.1451 -7.3248 1.2569 41 1 4.7420 -8.3043 1.7475 42 1 4.4487 -6.0024 -0.2174 43 1 4.3941 -5.7316 1.5435 44 1 2.6936 -3.6895 -0.7463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795059947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:21 Heat of formation + Delta-G solvation = -77.475280 kcal Electronic energy + Delta-G solvation = -26494.120911 eV Core-core repulsion = 22922.993857 eV Total energy + Delta-G solvation = -3571.127054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.97648 -39.47047 -38.35764 -36.90037 -35.69458 -35.00787 -33.94889 -31.94583 -31.60600 -28.81641 -27.41746 -27.27858 -23.77655 -23.35718 -23.03828 -22.79656 -20.66513 -20.27901 -19.10910 -18.44740 -17.74316 -17.37988 -16.96657 -16.66221 -16.30873 -16.12055 -15.39990 -15.17747 -15.08846 -14.72344 -14.40318 -14.32441 -14.29878 -13.94030 -13.73637 -13.31088 -13.26148 -13.07465 -13.07072 -12.89040 -12.67569 -12.61487 -12.40344 -12.24066 -12.21618 -11.89233 -11.85568 -11.58998 -11.56122 -11.37846 -11.33386 -11.15462 -10.91700 -9.90492 -9.71525 -9.59106 -8.74494 -6.48082 -0.51934 0.38026 0.81499 1.36424 1.46154 1.49677 2.09216 2.17103 2.54911 2.75233 3.37970 3.47668 3.71148 3.98906 4.05810 4.11403 4.21788 4.24319 4.26933 4.39102 4.42294 4.58653 4.65100 4.75928 4.80163 4.85138 4.88116 4.94066 4.99745 5.04824 5.10957 5.15510 5.18078 5.23294 5.27211 5.35189 5.38579 5.49863 5.51268 5.53520 5.66346 5.83645 5.85465 5.90720 6.07591 6.49465 6.77298 6.81821 8.23650 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.003884 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.110242 B = 7208.126064 C = 7847.722715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.081 0.919 9 C 0.064 3.936 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.150 4.150 13 C -0.644 4.644 14 S 2.707 3.293 15 O -0.981 6.981 16 O -0.996 6.996 17 N -0.983 5.983 18 C 0.117 3.883 19 C -0.163 4.163 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.131 4.131 24 C 0.105 3.895 25 C -0.149 4.149 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -13.713 6.587 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.100 0.900 9 C 0.061 3.939 10 C -0.160 4.160 11 C -0.142 4.142 12 C -0.171 4.171 13 C -0.732 4.732 14 S 2.801 3.199 15 O -0.971 6.971 16 O -0.986 6.986 17 N -0.823 5.823 18 C -0.006 4.006 19 C -0.201 4.201 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.157 4.157 23 C -0.170 4.170 24 C -0.020 4.020 25 C -0.170 4.170 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.243 -13.983 5.794 17.234 hybrid contribution -0.309 1.775 -0.141 1.807 sum 7.934 -12.208 5.653 15.618 Atomic orbital electron populations 1.69814 1.09090 1.31140 1.35043 1.26808 0.95543 1.04698 0.90906 0.85186 0.78773 0.75162 0.80247 1.18474 1.19019 1.18000 1.19861 0.98505 0.92105 1.42235 0.90047 1.18052 0.92701 0.92925 0.90261 1.21658 0.98200 0.97608 0.98557 1.21163 0.99776 0.92651 1.00596 1.20452 0.96943 0.98206 1.01476 1.30451 1.08749 1.19449 1.14539 1.01279 0.72558 0.72838 0.73263 1.93449 1.53614 1.63103 1.86974 1.93476 1.72836 1.86360 1.45916 1.57177 1.20388 1.55998 1.48739 1.21745 1.01806 0.87168 0.89925 1.22550 0.98502 0.96837 1.02256 1.21783 0.96841 0.99214 0.97463 1.21804 0.97402 0.98734 0.98732 1.21773 0.97150 0.99117 0.97643 1.22246 0.99837 0.95992 0.98903 1.21572 0.79770 0.98079 1.02573 1.20805 1.01718 0.92300 1.02216 0.89677 0.86727 0.85400 0.85228 0.85986 0.91109 0.92278 0.88607 0.91044 0.88798 0.96148 0.92017 0.93284 0.89739 0.88816 0.88170 0.91157 0.90811 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.38 10.95 21.82 0.24 -42.14 16 2 C 0.04 1.77 5.15 85.26 0.44 2.21 16 3 Si 0.99 37.21 29.59 68.60 2.03 39.24 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.50 -26.64 9.05 23.46 0.21 -26.43 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.06 3.46 5.57 -21.29 -0.12 3.34 16 10 C -0.14 -7.27 8.69 22.73 0.20 -7.07 16 11 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 12 C -0.15 -6.63 9.53 22.46 0.21 -6.41 16 13 C -0.64 -29.39 5.96 22.22 0.13 -29.25 16 14 S 2.71 106.11 4.48 -56.49 -0.25 105.85 16 15 O -0.98 -40.02 14.19 -128.00 -1.82 -41.84 16 16 O -1.00 -44.28 15.68 -128.00 -2.01 -46.29 16 17 N -0.98 -28.22 1.84 -516.82 -0.95 -29.17 16 18 C 0.12 2.58 5.36 86.25 0.46 3.04 16 19 C -0.16 -3.52 5.52 30.82 0.17 -3.35 16 20 C -0.12 -2.05 5.49 30.68 0.17 -1.88 16 21 C -0.13 -2.94 5.40 30.73 0.17 -2.77 16 22 C -0.12 -2.33 5.75 30.87 0.18 -2.15 16 23 C -0.13 -2.27 5.45 30.70 0.17 -2.10 16 24 C 0.11 2.64 6.13 86.75 0.53 3.17 16 25 C -0.15 -7.59 9.26 22.73 0.21 -7.38 16 26 H 0.29 13.50 8.30 -92.72 -0.77 12.73 16 27 H 0.11 6.05 6.17 -2.91 -0.02 6.03 16 28 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 29 H 0.13 5.01 7.60 -2.91 -0.02 4.98 16 30 H 0.12 1.81 6.08 -2.38 -0.01 1.79 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.71 5.20 -2.39 -0.01 1.69 16 33 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.22 5.48 -2.39 -0.01 1.21 16 36 H 0.02 0.59 5.03 -2.38 -0.01 0.58 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.13 7.87 -2.38 -0.02 1.11 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.38 3.35 -2.39 -0.01 1.37 16 42 H 0.07 2.06 6.69 -2.39 -0.02 2.04 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -67.15 342.72 1.61 -65.54 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 1.01 Total: 31.22 kcal Atomic # 6 Polarization: -85.77 SS G_CDS: 3.35 Total: -82.42 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -0.71 Total: -71.31 kcal Atomic # 8 Polarization: -84.30 SS G_CDS: -3.82 Total: -88.13 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: 106.11 SS G_CDS: -0.25 Total: 105.85 kcal Total: -67.15 1.61 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795059947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.939 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds