Wall clock time and date at job start Tue Mar 31 2020 13:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 115.55109 * 2 1 4 4 C 1.52997 * 117.49767 * 145.66822 * 2 1 3 5 5 N 1.46502 * 117.50305 * 359.97438 * 4 2 1 6 6 S 1.65588 * 120.00455 * 214.91314 * 5 4 2 7 7 O 1.42096 * 106.40575 * 178.53853 * 6 5 4 8 8 O 1.42100 * 106.40464 * 311.46016 * 6 5 4 9 9 C 1.76203 * 107.21768 * 65.00031 * 6 5 4 10 10 C 1.38661 * 119.87503 * 269.72808 * 9 6 5 11 11 C 1.38609 * 120.49858 * 179.72399 * 10 9 6 12 12 C 1.37639 * 120.25128 * 0.54696 * 11 10 9 13 13 C 1.40698 * 119.74186 * 359.72912 * 12 11 10 14 14 C 1.41393 * 120.24393 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00108 * 155.25250 * 14 13 12 16 16 C 1.39949 * 119.99966 * 335.25511 * 14 13 12 17 17 N 1.30821 * 120.00219 * 342.24454 * 16 14 13 18 18 Si 1.86807 * 119.99944 * 162.24566 * 16 14 13 19 19 H 1.48495 * 109.47128 * 89.99967 * 18 16 14 20 20 H 1.48496 * 109.46873 * 210.00088 * 18 16 14 21 21 H 1.48499 * 109.47042 * 330.00060 * 18 16 14 22 22 C 1.37593 * 119.87594 * 90.00220 * 9 6 5 23 23 C 1.52995 * 60.03385 * 107.48231 * 4 2 1 24 24 C 1.53000 * 117.50425 * 107.49948 * 23 4 2 25 25 C 1.53001 * 117.49701 * 252.52609 * 23 4 2 26 26 H 1.08992 * 109.47309 * 325.72447 * 1 2 3 27 27 H 1.09004 * 109.46880 * 85.72713 * 1 2 3 28 28 H 1.09002 * 109.47246 * 205.72085 * 1 2 3 29 29 H 1.09001 * 109.47313 * 154.27410 * 3 2 1 30 30 H 1.09002 * 109.46992 * 274.27757 * 3 2 1 31 31 H 1.09001 * 109.46687 * 34.27413 * 3 2 1 32 32 H 1.09007 * 117.50133 * 214.98300 * 4 2 1 33 33 H 0.97007 * 119.99355 * 34.91630 * 5 4 2 34 34 H 1.07997 * 119.74652 * 359.97438 * 10 9 6 35 35 H 1.08002 * 119.87748 * 180.25712 * 11 10 9 36 36 H 1.08005 * 120.12728 * 179.74920 * 12 11 10 37 37 H 0.96997 * 120.00028 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.13208 * 359.97438 * 22 9 6 39 39 H 1.09003 * 109.46858 * 111.39062 * 24 23 4 40 40 H 1.08989 * 109.47576 * 231.39474 * 24 23 4 41 41 H 1.08999 * 109.46773 * 351.39805 * 24 23 4 42 42 H 1.08995 * 109.47654 * 8.60333 * 25 23 4 43 43 H 1.08995 * 109.47507 * 128.60578 * 25 23 4 44 44 H 1.09004 * 109.47271 * 248.60527 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7654 5 7 1.3961 -2.1114 1.4427 6 16 1.8847 -2.7654 2.8833 7 8 0.8522 -3.6517 3.2925 8 8 3.2333 -3.1746 2.7015 9 6 1.9163 -1.4590 4.0653 10 6 3.0759 -0.7210 4.2482 11 6 3.1134 0.3132 5.1704 12 6 2.0006 0.6114 5.9235 13 6 0.8202 -0.1344 5.7503 14 6 -0.3294 0.1632 6.5179 15 1 -1.3093 -0.0968 6.1459 16 6 -0.1973 0.7948 7.7598 17 7 0.9594 0.8006 8.3709 18 14 -1.6727 1.6295 8.5448 19 1 -2.3980 0.6535 9.3971 20 1 -1.2114 2.7682 9.3787 21 1 -2.5814 2.1301 7.4823 22 6 0.7919 -1.1786 4.8071 23 6 2.2368 -1.1221 -0.7645 24 6 3.5495 -0.7780 -1.4711 25 6 1.3589 -2.1577 -1.4702 26 1 -0.3633 0.8491 0.5787 27 1 -0.3633 0.0766 -1.0249 28 1 -0.3634 -0.9259 0.4460 29 1 3.1819 1.3089 0.4461 30 1 2.2775 1.7412 -1.0248 31 1 1.5804 2.0744 0.5788 32 1 3.1715 -0.8747 1.2687 33 1 0.5535 -2.3842 1.0471 34 1 3.9552 -0.9512 3.6650 35 1 4.0206 0.8842 5.3018 36 1 2.0333 1.4151 6.6443 37 1 1.0508 1.2381 9.2318 38 1 -0.1090 -1.7572 4.6659 39 1 3.9369 -1.6662 -1.9705 40 1 3.3711 0.0046 -2.2084 41 1 4.2758 -0.4277 -0.7378 42 1 0.7295 -2.6610 -0.7364 43 1 0.7297 -1.6589 -2.2073 44 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795131677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:24 Heat of formation + Delta-G solvation = -46.242745 kcal Electronic energy + Delta-G solvation = -25969.451316 eV Core-core repulsion = 22399.678607 eV Total energy + Delta-G solvation = -3569.772710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.71017 -37.63697 -36.64854 -35.30799 -33.84765 -33.06260 -31.19390 -30.08146 -29.79528 -28.64250 -26.68414 -26.30476 -25.48904 -21.90023 -21.04463 -20.41473 -19.19679 -18.02187 -17.79040 -17.06252 -16.19401 -15.91341 -15.17679 -14.89389 -14.75324 -14.53178 -14.20851 -13.67091 -13.47513 -13.35341 -12.78930 -12.64635 -12.57666 -12.56671 -12.31761 -12.07028 -11.94116 -11.84388 -11.62481 -11.61543 -11.55282 -11.52063 -11.40122 -11.36205 -11.14952 -11.00734 -10.87624 -10.82930 -10.61170 -9.77527 -9.56232 -9.34750 -9.34234 -8.64411 -8.03330 -7.70001 -6.92504 -4.53496 0.98949 2.19864 2.63525 2.99555 3.01352 3.07838 3.48221 3.65323 3.82685 4.23823 4.43866 4.57653 4.65291 4.69122 4.97949 5.08322 5.12719 5.25622 5.42266 5.45744 5.53428 5.67469 5.72392 5.79218 5.84046 5.92815 5.94633 5.98229 6.01297 6.03617 6.04904 6.16330 6.28200 6.36723 6.41931 6.65138 6.75863 6.84087 7.02545 7.15642 7.22603 7.38143 7.72050 7.80212 7.94181 8.39828 8.66898 8.71740 10.03231 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.003972 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.859411 B = 7048.416749 C = 7483.128693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.127 4.127 3 C -0.113 4.113 4 C 0.111 3.889 5 N -1.089 6.089 6 S 2.688 3.312 7 O -0.971 6.971 8 O -0.972 6.972 9 C -0.628 4.628 10 C -0.148 4.148 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.093 3.907 14 C -0.461 4.461 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.794 5.794 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.112 4.112 25 C -0.114 4.114 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.136 0.864 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.283 0.717 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 1.609 -15.183 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.130 4.130 3 C -0.170 4.170 4 C 0.002 3.998 5 N -0.844 5.844 6 S 2.784 3.216 7 O -0.962 6.962 8 O -0.962 6.962 9 C -0.720 4.720 10 C -0.169 4.169 11 C -0.139 4.139 12 C -0.137 4.137 13 C 0.089 3.911 14 C -0.490 4.490 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.419 5.419 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.170 4.170 25 C -0.171 4.171 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.541 0.783 -14.725 14.826 hybrid contribution -1.041 0.989 0.724 1.608 sum 0.500 1.772 -14.001 14.122 Atomic orbital electron populations 1.21270 0.92055 1.02513 1.01340 1.22148 0.95317 0.91596 1.03913 1.21313 1.00363 0.93860 1.01476 1.21775 0.95165 0.91841 0.91008 1.55321 1.32711 1.56675 1.39704 1.01717 0.73165 0.74171 0.72517 1.93544 1.58515 1.62743 1.81385 1.93519 1.36256 1.80823 1.85600 1.29683 1.02004 1.21325 1.19016 1.20057 0.95183 0.99009 1.02636 1.20792 0.97812 0.97947 0.97384 1.21623 0.93201 0.99825 0.99059 1.17665 0.93329 0.89315 0.90777 1.19592 0.94261 1.33778 1.01394 0.89997 1.25930 0.97327 0.94085 0.96933 1.69780 1.25455 1.32796 1.13839 0.86265 0.81492 0.79359 0.79420 1.19314 1.19993 1.18338 1.20734 0.95546 0.98123 1.00074 1.22169 0.98271 0.99533 0.93535 1.21308 0.94344 1.01337 0.99962 1.21266 0.98898 0.97234 0.99729 0.91724 0.92440 0.92331 0.92181 0.92341 0.91852 0.84678 0.75155 0.87731 0.88431 0.85822 0.90555 0.87148 0.92192 0.92187 0.92126 0.92394 0.92242 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.82 37.16 0.33 -0.93 16 2 C -0.13 -1.46 2.70 -154.47 -0.42 -1.88 16 3 C -0.11 -1.18 8.88 37.16 0.33 -0.85 16 4 C 0.11 1.48 5.71 -67.93 -0.39 1.10 16 5 N -1.09 -15.93 5.13 -4.89 -0.03 -15.95 16 6 S 2.69 50.82 5.71 -107.50 -0.61 50.21 16 7 O -0.97 -20.67 17.27 -57.17 -0.99 -21.65 16 8 O -0.97 -20.03 17.01 -57.17 -0.97 -21.00 16 9 C -0.63 -13.65 5.94 -39.66 -0.24 -13.89 16 10 C -0.15 -3.16 9.53 -39.29 -0.37 -3.53 16 11 C -0.12 -2.66 10.02 -39.66 -0.40 -3.05 16 12 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 13 C 0.09 2.38 5.57 -106.82 -0.60 1.78 16 14 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 15 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 16 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 17 N -0.79 -19.77 10.97 55.55 0.61 -19.16 16 18 Si 0.91 17.98 29.60 -169.99 -5.03 12.95 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 23 C -0.13 -1.44 2.70 -154.47 -0.42 -1.86 16 24 C -0.11 -1.05 8.88 37.16 0.33 -0.72 16 25 C -0.11 -1.11 8.82 37.16 0.33 -0.78 16 26 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 27 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 28 H 0.06 0.65 5.79 -51.93 -0.30 0.35 16 29 H 0.06 0.62 7.78 -51.93 -0.40 0.22 16 30 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 31 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 32 H 0.14 1.87 7.91 -51.93 -0.41 1.46 16 33 H 0.41 5.18 5.49 -34.46 -0.19 4.99 16 34 H 0.10 2.01 7.59 -52.49 -0.40 1.61 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.10 6.18 -52.48 -0.32 2.78 16 37 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 38 H 0.11 2.55 7.60 -52.49 -0.40 2.15 16 39 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 40 H 0.06 0.49 8.02 -51.94 -0.42 0.07 16 41 H 0.06 0.57 7.78 -51.93 -0.40 0.16 16 42 H 0.06 0.58 5.77 -51.93 -0.30 0.28 16 43 H 0.06 0.51 8.02 -51.93 -0.42 0.09 16 44 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -30.16 366.67 -10.55 -40.70 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.41 Total: 9.94 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: -2.64 Total: -41.56 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.58 Total: -35.11 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.96 Total: -42.65 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 50.82 SS G_CDS: -0.61 Total: 50.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.16 -10.55 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795131677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.540 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds