Wall clock time and date at job start Tue Mar 31 2020 13:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 115.55109 * 2 1 4 4 C 1.52997 * 117.49767 * 145.66822 * 2 1 3 5 5 N 1.46502 * 117.50305 * 359.97438 * 4 2 1 6 6 S 1.65588 * 120.00455 * 214.91314 * 5 4 2 7 7 O 1.42096 * 106.40575 * 178.53853 * 6 5 4 8 8 O 1.42100 * 106.40464 * 311.46016 * 6 5 4 9 9 C 1.76203 * 107.21768 * 65.00031 * 6 5 4 10 10 C 1.38661 * 119.87503 * 269.72808 * 9 6 5 11 11 C 1.38609 * 120.49858 * 179.72399 * 10 9 6 12 12 C 1.37639 * 120.25128 * 0.54696 * 11 10 9 13 13 C 1.40698 * 119.74186 * 359.72912 * 12 11 10 14 14 C 1.41393 * 120.24393 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00108 * 155.25250 * 14 13 12 16 16 C 1.39949 * 119.99966 * 335.25511 * 14 13 12 17 17 N 1.30821 * 120.00219 * 342.24454 * 16 14 13 18 18 Si 1.86807 * 119.99944 * 162.24566 * 16 14 13 19 19 H 1.48495 * 109.47128 * 89.99967 * 18 16 14 20 20 H 1.48496 * 109.46873 * 210.00088 * 18 16 14 21 21 H 1.48499 * 109.47042 * 330.00060 * 18 16 14 22 22 C 1.37593 * 119.87594 * 90.00220 * 9 6 5 23 23 C 1.52995 * 60.03385 * 107.48231 * 4 2 1 24 24 C 1.53000 * 117.50425 * 107.49948 * 23 4 2 25 25 C 1.53001 * 117.49701 * 252.52609 * 23 4 2 26 26 H 1.08992 * 109.47309 * 325.72447 * 1 2 3 27 27 H 1.09004 * 109.46880 * 85.72713 * 1 2 3 28 28 H 1.09002 * 109.47246 * 205.72085 * 1 2 3 29 29 H 1.09001 * 109.47313 * 154.27410 * 3 2 1 30 30 H 1.09002 * 109.46992 * 274.27757 * 3 2 1 31 31 H 1.09001 * 109.46687 * 34.27413 * 3 2 1 32 32 H 1.09007 * 117.50133 * 214.98300 * 4 2 1 33 33 H 0.97007 * 119.99355 * 34.91630 * 5 4 2 34 34 H 1.07997 * 119.74652 * 359.97438 * 10 9 6 35 35 H 1.08002 * 119.87748 * 180.25712 * 11 10 9 36 36 H 1.08005 * 120.12728 * 179.74920 * 12 11 10 37 37 H 0.96997 * 120.00028 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.13208 * 359.97438 * 22 9 6 39 39 H 1.09003 * 109.46858 * 111.39062 * 24 23 4 40 40 H 1.08989 * 109.47576 * 231.39474 * 24 23 4 41 41 H 1.08999 * 109.46773 * 351.39805 * 24 23 4 42 42 H 1.08995 * 109.47654 * 8.60333 * 25 23 4 43 43 H 1.08995 * 109.47507 * 128.60578 * 25 23 4 44 44 H 1.09004 * 109.47271 * 248.60527 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7654 5 7 1.3961 -2.1114 1.4427 6 16 1.8847 -2.7654 2.8833 7 8 0.8522 -3.6517 3.2925 8 8 3.2333 -3.1746 2.7015 9 6 1.9163 -1.4590 4.0653 10 6 3.0759 -0.7210 4.2482 11 6 3.1134 0.3132 5.1704 12 6 2.0006 0.6114 5.9235 13 6 0.8202 -0.1344 5.7503 14 6 -0.3294 0.1632 6.5179 15 1 -1.3093 -0.0968 6.1459 16 6 -0.1973 0.7948 7.7598 17 7 0.9594 0.8006 8.3709 18 14 -1.6727 1.6295 8.5448 19 1 -2.3980 0.6535 9.3971 20 1 -1.2114 2.7682 9.3787 21 1 -2.5814 2.1301 7.4823 22 6 0.7919 -1.1786 4.8071 23 6 2.2368 -1.1221 -0.7645 24 6 3.5495 -0.7780 -1.4711 25 6 1.3589 -2.1577 -1.4702 26 1 -0.3633 0.8491 0.5787 27 1 -0.3633 0.0766 -1.0249 28 1 -0.3634 -0.9259 0.4460 29 1 3.1819 1.3089 0.4461 30 1 2.2775 1.7412 -1.0248 31 1 1.5804 2.0744 0.5788 32 1 3.1715 -0.8747 1.2687 33 1 0.5535 -2.3842 1.0471 34 1 3.9552 -0.9512 3.6650 35 1 4.0206 0.8842 5.3018 36 1 2.0333 1.4151 6.6443 37 1 1.0508 1.2381 9.2318 38 1 -0.1090 -1.7572 4.6659 39 1 3.9369 -1.6662 -1.9705 40 1 3.3711 0.0046 -2.2084 41 1 4.2758 -0.4277 -0.7378 42 1 0.7295 -2.6610 -0.7364 43 1 0.7297 -1.6589 -2.2073 44 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795131677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:23 Heat of formation + Delta-G solvation = -63.808943 kcal Electronic energy + Delta-G solvation = -25970.213044 eV Core-core repulsion = 22399.678607 eV Total energy + Delta-G solvation = -3570.534437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64003 -39.44614 -38.28352 -36.94846 -35.67273 -34.23053 -32.00789 -31.92067 -31.59192 -29.45531 -27.61789 -27.34120 -27.08770 -23.67842 -22.82996 -21.48824 -20.69957 -19.68080 -18.65866 -18.54789 -17.72778 -17.38055 -16.83714 -16.57479 -16.18723 -15.55293 -15.26633 -15.21237 -15.05859 -14.52467 -14.32624 -13.73900 -13.68750 -13.46081 -13.35513 -13.29189 -13.25185 -13.09718 -13.08862 -13.06459 -12.97543 -12.86454 -12.85832 -12.61420 -12.59123 -12.41189 -12.23697 -12.18065 -11.64878 -11.56539 -11.28207 -11.13963 -10.24408 -9.85949 -9.68567 -9.55722 -8.73493 -6.45506 -0.54587 0.40462 0.84517 1.36820 1.44137 1.51975 2.05367 2.17595 2.53007 2.69418 2.83345 3.40764 3.51586 3.69523 3.79658 3.82791 4.10103 4.25488 4.26054 4.30967 4.43085 4.64170 4.80054 4.83547 4.88778 4.90154 4.92514 5.02544 5.03458 5.06637 5.10832 5.14346 5.14619 5.20254 5.22060 5.25846 5.40599 5.45396 5.46822 5.56054 5.60193 5.88099 5.93206 6.03400 6.10472 6.52155 6.79555 6.84457 8.24816 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.003972 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.859411 B = 7048.416749 C = 7483.128693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.073 3.927 5 N -1.073 6.073 6 S 2.719 3.281 7 O -0.996 6.996 8 O -0.984 6.984 9 C -0.634 4.634 10 C -0.145 4.145 11 C -0.121 4.121 12 C -0.139 4.139 13 C 0.064 3.936 14 C -0.499 4.499 15 H 0.079 0.921 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.263 1.263 21 H -0.257 1.257 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.423 0.577 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.292 0.708 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 2.140 -17.078 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.127 4.127 3 C -0.171 4.171 4 C -0.035 4.035 5 N -0.833 5.833 6 S 2.812 3.188 7 O -0.987 6.987 8 O -0.974 6.974 9 C -0.724 4.724 10 C -0.166 4.166 11 C -0.140 4.140 12 C -0.158 4.158 13 C 0.061 3.939 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.178 4.178 17 N -0.450 5.450 18 Si 0.803 3.197 19 H -0.189 1.189 20 H -0.188 1.188 21 H -0.181 1.181 22 C -0.166 4.166 23 C -0.116 4.116 24 C -0.172 4.172 25 C -0.177 4.177 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.262 0.738 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.715 1.329 -16.608 16.750 hybrid contribution -1.000 0.781 1.167 1.723 sum 0.715 2.110 -15.442 15.602 Atomic orbital electron populations 1.21316 0.91858 1.01884 1.02453 1.22242 0.95558 0.91857 1.03001 1.21346 0.99995 0.93143 1.02628 1.22077 0.95356 0.93164 0.92891 1.54866 1.33545 1.57028 1.37841 1.00776 0.72422 0.73065 0.72522 1.93504 1.59209 1.63582 1.82378 1.93497 1.37176 1.80843 1.85925 1.30168 1.01279 1.21649 1.19268 1.20432 0.95855 0.98223 1.02099 1.21124 0.98094 0.98184 0.96583 1.21628 0.94043 1.00173 1.00005 1.18015 0.94066 0.90163 0.91636 1.19857 0.94292 1.35941 1.02711 0.90252 1.26762 1.00280 0.93934 0.96849 1.69820 1.27357 1.33348 1.14494 0.85184 0.77683 0.78382 0.78402 1.18869 1.18760 1.18062 1.20801 0.96485 0.98397 1.00906 1.22296 0.98968 0.98840 0.91485 1.21378 0.93359 1.02284 1.00181 1.21358 0.99082 0.97262 0.99952 0.92620 0.90401 0.92783 0.92259 0.90307 0.92717 0.85351 0.73797 0.85179 0.85518 0.86945 0.89747 0.87434 0.91436 0.90511 0.92345 0.92886 0.90596 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.82 71.98 0.63 -1.77 16 2 C -0.12 -2.62 2.70 -52.16 -0.14 -2.76 16 3 C -0.11 -2.18 8.88 71.98 0.64 -1.54 16 4 C 0.07 1.85 5.71 44.99 0.26 2.11 16 5 N -1.07 -30.41 5.13 -169.39 -0.87 -31.28 16 6 S 2.72 101.84 5.71 -56.49 -0.32 101.52 16 7 O -1.00 -42.53 17.27 -128.00 -2.21 -44.74 16 8 O -0.98 -39.55 17.01 -128.00 -2.18 -41.73 16 9 C -0.63 -27.77 5.94 22.22 0.13 -27.64 16 10 C -0.15 -6.14 9.53 22.46 0.21 -5.93 16 11 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 12 C -0.14 -7.03 8.70 22.73 0.20 -6.83 16 13 C 0.06 3.43 5.57 -21.29 -0.12 3.32 16 14 C -0.50 -26.51 9.05 23.46 0.21 -26.30 16 15 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 16 C 0.04 1.83 5.14 85.26 0.44 2.27 16 17 N -0.82 -42.01 10.97 21.83 0.24 -41.77 16 18 Si 0.98 37.19 29.60 68.60 2.03 39.22 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 22 C -0.14 -7.17 9.26 22.73 0.21 -6.96 16 23 C -0.11 -2.17 2.70 -52.16 -0.14 -2.32 16 24 C -0.11 -1.80 8.88 71.98 0.64 -1.16 16 25 C -0.12 -1.99 8.82 71.98 0.63 -1.35 16 26 H 0.05 1.23 7.92 -2.39 -0.02 1.21 16 27 H 0.08 1.26 8.02 -2.38 -0.02 1.24 16 28 H 0.05 1.13 5.79 -2.39 -0.01 1.12 16 29 H 0.06 1.13 7.78 -2.39 -0.02 1.12 16 30 H 0.08 1.18 8.03 -2.39 -0.02 1.16 16 31 H 0.05 1.13 7.92 -2.39 -0.02 1.11 16 32 H 0.13 3.40 7.91 -2.38 -0.02 3.38 16 33 H 0.42 10.21 5.49 -96.74 -0.53 9.68 16 34 H 0.13 4.78 7.59 -2.91 -0.02 4.76 16 35 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 37 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 38 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 39 H 0.07 0.97 7.92 -2.39 -0.02 0.95 16 40 H 0.08 0.97 8.02 -2.39 -0.02 0.95 16 41 H 0.06 0.95 7.78 -2.39 -0.02 0.93 16 42 H 0.05 0.93 5.77 -2.39 -0.01 0.92 16 43 H 0.08 1.04 8.02 -2.39 -0.02 1.02 16 44 H 0.07 1.05 7.92 -2.38 -0.02 1.03 16 Total: -1.00 -65.52 366.67 1.20 -64.32 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.48 Total: 36.44 kcal Atomic # 6 Polarization: -86.02 SS G_CDS: 4.03 Total: -81.98 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -0.63 Total: -73.05 kcal Atomic # 8 Polarization: -82.08 SS G_CDS: -4.39 Total: -86.47 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: 101.84 SS G_CDS: -0.32 Total: 101.52 kcal Total: -65.52 1.20 -64.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795131677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.513 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds