Wall clock time and date at job start Tue Mar 31 2020 13:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86791 * 120.00215 * 2 1 4 4 H 1.48508 * 109.47369 * 240.00539 * 3 2 1 5 5 H 1.48496 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47336 * 120.00417 * 3 2 1 7 7 C 1.38664 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99355 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99895 * 185.06318 * 9 7 2 11 11 C 1.38894 * 120.06868 * 354.46204 * 10 9 7 12 12 C 1.38079 * 119.92871 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.07203 * 0.02562 * 12 11 10 14 14 C 1.38278 * 120.13701 * 359.97285 * 13 12 11 15 15 C 1.50694 * 119.96828 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47389 * 89.99930 * 15 14 13 17 17 O 1.21287 * 119.99698 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00442 * 180.02562 * 16 15 14 19 19 C 1.47025 * 125.64421 * 359.68961 * 18 16 15 20 20 C 1.54341 * 107.26195 * 178.85103 * 19 18 16 21 21 C 1.55151 * 103.02229 * 338.14192 * 20 19 18 22 22 F 1.39898 * 111.00758 * 277.23533 * 21 20 19 23 23 C 1.52997 * 111.00383 * 153.37985 * 21 20 19 24 24 O 1.42906 * 109.47216 * 67.80932 * 23 21 20 25 25 C 1.47423 * 125.65155 * 180.02562 * 18 16 15 26 26 C 1.38129 * 120.06880 * 0.02562 * 14 13 12 27 27 H 0.97000 * 120.00325 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03756 * 0.04769 * 11 10 9 29 29 H 1.08002 * 119.96288 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.93262 * 179.70026 * 13 12 11 31 31 H 1.08998 * 109.47815 * 210.00444 * 15 14 13 32 32 H 1.08999 * 109.47330 * 330.00254 * 15 14 13 33 33 H 1.08995 * 109.88453 * 298.39501 * 19 18 16 34 34 H 1.08996 * 109.88170 * 59.56857 * 19 18 16 35 35 H 1.09001 * 110.84944 * 219.67474 * 20 19 18 36 36 H 1.08996 * 110.66641 * 96.52542 * 20 19 18 37 37 H 1.09003 * 109.47208 * 187.79949 * 23 21 20 38 38 H 1.08997 * 109.47658 * 307.80384 * 23 21 20 39 39 H 0.96697 * 113.99932 * 180.02562 * 24 23 21 40 40 H 1.08999 * 110.36466 * 322.92990 * 25 18 16 41 41 H 1.09004 * 110.36758 * 85.13870 * 25 18 16 42 42 H 1.08000 * 120.03573 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1057 11 6 3.4573 -3.4395 0.0923 12 6 4.2024 -4.5970 0.1999 13 6 3.5686 -5.8206 0.3206 14 6 2.1875 -5.8888 0.3343 15 6 1.5010 -7.2237 0.4664 16 6 1.2794 -7.5325 1.9247 17 8 1.6428 -6.7457 2.7732 18 7 0.6775 -8.6830 2.2861 19 6 0.1838 -9.7176 1.3655 20 6 -0.3987 -10.8576 2.2276 21 6 0.3023 -10.6538 3.5966 22 9 1.5741 -11.2367 3.6005 23 6 -0.5543 -11.2040 4.7387 24 8 -0.6216 -12.6281 4.6403 25 6 0.3989 -9.1092 3.6696 26 6 1.4366 -4.7344 0.2269 27 1 -0.4850 0.8400 0.0004 28 1 3.9528 -2.4845 -0.0019 29 1 5.2812 -4.5470 0.1900 30 1 4.1535 -6.7250 0.3998 31 1 0.5406 -7.1910 -0.0480 32 1 2.1251 -7.9989 0.0217 33 1 -0.5926 -9.3023 0.7230 34 1 1.0061 -10.0971 0.7591 35 1 -0.1462 -11.8306 1.8061 36 1 -1.4788 -10.7507 2.3278 37 1 -0.1081 -10.9267 5.6938 38 1 -1.5592 -10.7873 4.6725 39 1 -1.1503 -13.0457 5.3339 40 1 1.2132 -8.8107 4.3297 41 1 -0.5436 -8.6842 4.0149 42 1 0.3580 -4.7882 0.2381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802339617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:07 Heat of formation + Delta-G solvation = -127.783973 kcal Electronic energy + Delta-G solvation = -26594.162381 eV Core-core repulsion = 22454.640602 eV Total energy + Delta-G solvation = -4139.521779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.96798 -40.10783 -38.90383 -37.85819 -36.82298 -36.26652 -32.58219 -32.20760 -31.60831 -29.99220 -29.16020 -27.55149 -25.75924 -25.09104 -23.51860 -21.62236 -21.11210 -20.82957 -19.46610 -18.01434 -17.58577 -17.25946 -17.02796 -16.85679 -15.95345 -15.55244 -15.28070 -15.07952 -14.95184 -14.59100 -14.48206 -14.33392 -13.86227 -13.54368 -13.42684 -13.29355 -12.97322 -12.94814 -12.58755 -12.50565 -12.35506 -11.85932 -11.78926 -11.49780 -11.36217 -11.21577 -11.08974 -10.79525 -10.72602 -10.60996 -10.57035 -10.41492 -9.79013 -9.28541 -8.84173 -8.77953 -8.01490 -7.16034 -6.38831 -3.97718 2.10909 2.44614 2.70155 2.78197 3.16676 3.18731 3.20744 3.34542 3.84155 3.87403 4.01664 4.06268 4.41596 4.56057 4.59805 4.70076 4.85436 4.87597 4.97390 5.03045 5.19373 5.20675 5.25147 5.30607 5.40514 5.47901 5.55337 5.69899 5.72566 5.80058 5.98457 6.02363 6.23308 6.39372 6.71090 6.97307 7.00944 7.12699 7.32015 7.32384 7.42743 7.49592 7.88409 8.06288 8.21157 9.06936 9.78040 10.79519 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.002317 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.628810 B =12079.874845 C =12526.587175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.035 4.035 15 C -0.087 4.087 16 C 0.533 3.467 17 O -0.513 6.513 18 N -0.627 5.627 19 C 0.097 3.903 20 C -0.143 4.143 21 C 0.107 3.893 22 F -0.188 7.188 23 C 0.066 3.934 24 O -0.563 6.563 25 C 0.092 3.908 26 C -0.174 4.174 27 H 0.269 0.731 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.385 0.615 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -23.706 5.470 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.035 4.035 15 C -0.126 4.126 16 C 0.323 3.677 17 O -0.386 6.386 18 N -0.364 5.364 19 C -0.026 4.026 20 C -0.181 4.181 21 C 0.088 3.912 22 F -0.168 7.168 23 C -0.013 4.013 24 O -0.369 6.369 25 C -0.032 4.032 26 C -0.193 4.193 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.523 -22.838 5.350 23.592 hybrid contribution 0.220 0.627 0.550 0.863 sum -2.304 -22.211 5.901 23.096 Atomic orbital electron populations 1.70029 1.05933 1.27637 1.46468 1.25271 0.95837 0.98765 0.96675 0.85791 0.78683 0.79849 0.79154 1.19537 1.20330 1.19535 1.21268 0.91753 0.80875 1.52796 0.89185 1.83971 1.34212 1.11347 1.78830 1.19264 0.90260 0.87954 0.92425 1.21179 0.93836 0.98942 1.10947 1.20681 0.98395 0.92281 0.97938 1.20357 0.93283 0.97041 1.10767 1.18662 0.93268 0.91878 0.99738 1.20559 1.02612 0.97158 0.92316 1.20530 0.76304 0.79009 0.91896 1.90780 1.48826 1.46159 1.52826 1.48475 1.61206 1.20238 1.06525 1.22107 0.99393 0.87997 0.93065 1.23200 1.01227 1.00011 0.93675 1.21970 0.80148 0.92344 0.96735 1.92899 1.40951 1.85487 1.97467 1.22502 0.99085 0.82397 0.97270 1.86496 1.76018 1.18511 1.55908 1.22581 1.03545 0.90864 0.86197 1.19930 0.99033 0.89926 1.10423 0.92075 0.85598 0.87441 0.87924 0.88203 0.88329 0.90290 0.90653 0.88286 0.88661 0.91905 0.91158 0.76684 0.88853 0.89484 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.67 55.48 0.76 -25.20 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.32 9.76 0.07 0.00 -5.32 16 10 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 11 C -0.23 -5.29 9.17 -39.40 -0.36 -5.65 16 12 C -0.07 -1.48 10.04 -39.61 -0.40 -1.87 16 13 C -0.20 -3.66 9.70 -39.53 -0.38 -4.05 16 14 C -0.03 -0.66 4.37 -104.65 -0.46 -1.12 16 15 C -0.09 -1.22 5.02 -29.04 -0.15 -1.37 16 16 C 0.53 8.31 7.84 -10.99 -0.09 8.22 16 17 O -0.51 -10.48 16.29 5.55 0.09 -10.39 16 18 N -0.63 -7.37 3.33 -170.50 -0.57 -7.94 16 19 C 0.10 0.78 6.49 -3.05 -0.02 0.76 16 20 C -0.14 -0.96 6.12 -24.89 -0.15 -1.11 16 21 C 0.11 0.91 1.37 -88.46 -0.12 0.79 16 22 F -0.19 -2.22 16.94 2.25 0.04 -2.19 16 23 C 0.07 0.39 6.30 37.16 0.23 0.62 16 24 O -0.56 -3.64 13.47 -35.23 -0.47 -4.11 16 25 C 0.09 0.93 6.18 -2.52 -0.02 0.91 16 26 C -0.17 -3.89 9.65 -39.39 -0.38 -4.27 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 29 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.47 7.99 -51.93 -0.41 0.05 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 39 H 0.39 0.64 9.12 45.56 0.42 1.06 16 40 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 41 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 42 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -37.72 361.53 -6.84 -44.55 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.76 Total: 3.55 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.35 Total: -14.45 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.19 Total: -33.14 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.38 Total: -19.82 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.72 -6.84 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802339617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.233 kcal (2) G-P(sol) polarization free energy of solvation -37.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds