Wall clock time and date at job start Tue Mar 31 2020 13:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86791 * 120.00215 * 2 1 4 4 H 1.48508 * 109.47369 * 240.00539 * 3 2 1 5 5 H 1.48496 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47336 * 120.00417 * 3 2 1 7 7 C 1.38664 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99355 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99895 * 185.06318 * 9 7 2 11 11 C 1.38894 * 120.06868 * 354.46204 * 10 9 7 12 12 C 1.38079 * 119.92871 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.07203 * 0.02562 * 12 11 10 14 14 C 1.38278 * 120.13701 * 359.97285 * 13 12 11 15 15 C 1.50694 * 119.96828 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47389 * 89.99930 * 15 14 13 17 17 O 1.21287 * 119.99698 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00442 * 180.02562 * 16 15 14 19 19 C 1.47025 * 125.64421 * 359.68961 * 18 16 15 20 20 C 1.54341 * 107.26195 * 178.85103 * 19 18 16 21 21 C 1.55151 * 103.02229 * 338.14192 * 20 19 18 22 22 F 1.39898 * 111.00758 * 277.23533 * 21 20 19 23 23 C 1.52997 * 111.00383 * 153.37985 * 21 20 19 24 24 O 1.42906 * 109.47216 * 67.80932 * 23 21 20 25 25 C 1.47423 * 125.65155 * 180.02562 * 18 16 15 26 26 C 1.38129 * 120.06880 * 0.02562 * 14 13 12 27 27 H 0.97000 * 120.00325 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03756 * 0.04769 * 11 10 9 29 29 H 1.08002 * 119.96288 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.93262 * 179.70026 * 13 12 11 31 31 H 1.08998 * 109.47815 * 210.00444 * 15 14 13 32 32 H 1.08999 * 109.47330 * 330.00254 * 15 14 13 33 33 H 1.08995 * 109.88453 * 298.39501 * 19 18 16 34 34 H 1.08996 * 109.88170 * 59.56857 * 19 18 16 35 35 H 1.09001 * 110.84944 * 219.67474 * 20 19 18 36 36 H 1.08996 * 110.66641 * 96.52542 * 20 19 18 37 37 H 1.09003 * 109.47208 * 187.79949 * 23 21 20 38 38 H 1.08997 * 109.47658 * 307.80384 * 23 21 20 39 39 H 0.96697 * 113.99932 * 180.02562 * 24 23 21 40 40 H 1.08999 * 110.36466 * 322.92990 * 25 18 16 41 41 H 1.09004 * 110.36758 * 85.13870 * 25 18 16 42 42 H 1.08000 * 120.03573 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1057 11 6 3.4573 -3.4395 0.0923 12 6 4.2024 -4.5970 0.1999 13 6 3.5686 -5.8206 0.3206 14 6 2.1875 -5.8888 0.3343 15 6 1.5010 -7.2237 0.4664 16 6 1.2794 -7.5325 1.9247 17 8 1.6428 -6.7457 2.7732 18 7 0.6775 -8.6830 2.2861 19 6 0.1838 -9.7176 1.3655 20 6 -0.3987 -10.8576 2.2276 21 6 0.3023 -10.6538 3.5966 22 9 1.5741 -11.2367 3.6005 23 6 -0.5543 -11.2040 4.7387 24 8 -0.6216 -12.6281 4.6403 25 6 0.3989 -9.1092 3.6696 26 6 1.4366 -4.7344 0.2269 27 1 -0.4850 0.8400 0.0004 28 1 3.9528 -2.4845 -0.0019 29 1 5.2812 -4.5470 0.1900 30 1 4.1535 -6.7250 0.3998 31 1 0.5406 -7.1910 -0.0480 32 1 2.1251 -7.9989 0.0217 33 1 -0.5926 -9.3023 0.7230 34 1 1.0061 -10.0971 0.7591 35 1 -0.1462 -11.8306 1.8061 36 1 -1.4788 -10.7507 2.3278 37 1 -0.1081 -10.9267 5.6938 38 1 -1.5592 -10.7873 4.6725 39 1 -1.1503 -13.0457 5.3339 40 1 1.2132 -8.8107 4.3297 41 1 -0.5436 -8.6842 4.0149 42 1 0.3580 -4.7882 0.2381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802339617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:06 Heat of formation + Delta-G solvation = -156.122826 kcal Electronic energy + Delta-G solvation = -26595.391246 eV Core-core repulsion = 22454.640602 eV Total energy + Delta-G solvation = -4140.750643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.74447 -41.28385 -40.54984 -38.80789 -38.07835 -37.32453 -34.35475 -33.71298 -32.68513 -30.91551 -30.62583 -28.82986 -27.34653 -26.42013 -24.27694 -23.28449 -22.65122 -21.58555 -20.59603 -19.43762 -18.75533 -18.50452 -18.22115 -17.73662 -16.93872 -16.75439 -16.38411 -16.22268 -16.16784 -16.02420 -15.90228 -15.47705 -15.11041 -14.98404 -14.71555 -14.33220 -14.04767 -13.97318 -13.82445 -13.79635 -13.56973 -13.19222 -12.96330 -12.84144 -12.50838 -12.42089 -12.38146 -12.23633 -12.13382 -12.04557 -11.63586 -11.22586 -11.05225 -11.01796 -10.79429 -9.77281 -9.66004 -8.99314 -8.47237 -6.15722 0.49078 0.74067 1.33597 1.44939 1.50247 1.55489 1.82115 2.17714 2.77597 2.82359 3.12766 3.22645 3.33118 3.42751 3.49884 3.74240 3.90115 4.04948 4.07007 4.08778 4.18570 4.29364 4.34144 4.39914 4.46652 4.54057 4.56435 4.59488 4.69430 4.72461 4.85625 4.89097 5.04216 5.12169 5.13337 5.20615 5.29252 5.63254 5.71232 5.73593 6.02196 6.19879 6.35632 6.83202 6.97151 7.08317 7.78275 8.76141 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.002317 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.628810 B =12079.874845 C =12526.587175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.245 4.245 12 C -0.073 4.073 13 C -0.182 4.182 14 C -0.028 4.028 15 C -0.083 4.083 16 C 0.530 3.470 17 O -0.577 6.577 18 N -0.623 5.623 19 C 0.088 3.912 20 C -0.134 4.134 21 C 0.101 3.899 22 F -0.211 7.211 23 C 0.069 3.931 24 O -0.583 6.583 25 C 0.085 3.915 26 C -0.190 4.190 27 H 0.273 0.727 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.405 0.595 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -26.419 5.168 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.265 4.265 12 C -0.091 4.091 13 C -0.201 4.201 14 C -0.028 4.028 15 C -0.122 4.122 16 C 0.320 3.680 17 O -0.456 6.456 18 N -0.357 5.357 19 C -0.034 4.034 20 C -0.172 4.172 21 C 0.082 3.918 22 F -0.191 7.191 23 C -0.010 4.010 24 O -0.392 6.392 25 C -0.038 4.038 26 C -0.209 4.209 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.256 0.744 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.797 -25.670 5.044 26.222 hybrid contribution 0.044 1.066 0.697 1.275 sum -1.752 -24.603 5.741 25.325 Atomic orbital electron populations 1.70178 1.08007 1.28848 1.48962 1.26614 0.96910 1.02740 0.95861 0.84642 0.77403 0.74205 0.79907 1.17907 1.19414 1.18463 1.21788 0.92506 0.81519 1.53334 0.88271 1.83931 1.35842 1.12498 1.81686 1.19861 0.91656 0.87938 0.94329 1.21305 0.93162 1.00180 1.11817 1.21125 1.00243 0.91427 0.96330 1.20959 0.93559 0.98160 1.07381 1.19166 0.93753 0.92988 0.96907 1.20653 1.04291 0.95200 0.92087 1.20680 0.76084 0.79410 0.91830 1.90762 1.51992 1.48490 1.54331 1.48482 1.59445 1.19653 1.08167 1.22458 1.00503 0.87457 0.92963 1.23231 1.02326 0.99637 0.91974 1.22215 0.79644 0.90866 0.99116 1.92851 1.42846 1.85733 1.97697 1.22498 0.99912 0.82441 0.96128 1.86432 1.76854 1.18725 1.57220 1.22727 1.03474 0.92540 0.85091 1.20198 0.99333 0.90323 1.11084 0.91822 0.86305 0.83689 0.83871 0.85726 0.84356 0.88072 0.89587 0.87732 0.86285 0.91754 0.88387 0.74377 0.91274 0.87680 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.21 13.67 21.62 0.30 -57.92 16 2 C -0.02 -1.42 5.49 84.84 0.47 -0.95 16 3 Si 1.02 44.34 29.55 68.60 2.03 46.37 16 4 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.42 -25.29 9.49 67.92 0.64 -24.65 16 8 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 9 O -0.23 -14.72 9.76 -22.67 -0.22 -14.94 16 10 C 0.11 5.99 6.65 22.58 0.15 6.14 16 11 C -0.25 -11.54 9.17 22.39 0.21 -11.33 16 12 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.18 -6.29 9.70 22.30 0.22 -6.07 16 14 C -0.03 -1.00 4.37 -19.88 -0.09 -1.09 16 15 C -0.08 -2.09 5.02 29.10 0.15 -1.94 16 16 C 0.53 15.67 7.84 87.66 0.69 16.36 16 17 O -0.58 -23.71 16.29 -3.05 -0.05 -23.76 16 18 N -0.62 -13.28 3.33 -811.72 -2.70 -15.98 16 19 C 0.09 1.07 6.49 86.73 0.56 1.64 16 20 C -0.13 -1.32 6.12 31.79 0.19 -1.13 16 21 C 0.10 1.49 1.37 -9.40 -0.01 1.48 16 22 F -0.21 -4.72 16.94 44.97 0.76 -3.95 16 23 C 0.07 0.64 6.30 71.98 0.45 1.09 16 24 O -0.58 -6.02 13.47 -148.98 -2.01 -8.03 16 25 C 0.08 1.61 6.18 86.86 0.54 2.14 16 26 C -0.19 -8.73 9.65 22.39 0.22 -8.51 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.12 5.61 5.64 -2.91 -0.02 5.60 16 29 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.12 2.54 8.08 -2.39 -0.02 2.52 16 32 H 0.14 2.40 8.08 -2.39 -0.02 2.38 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.12 0.63 7.99 -2.39 -0.02 0.61 16 37 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.36 8.08 -2.39 -0.02 0.34 16 39 H 0.40 0.31 9.12 -74.06 -0.68 -0.36 16 40 H 0.07 1.65 8.04 -2.39 -0.02 1.63 16 41 H 0.11 1.59 8.04 -2.39 -0.02 1.57 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -89.72 361.53 3.09 -86.63 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.38 Total: 20.95 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.60 Total: -29.36 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -2.40 Total: -73.90 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -2.28 Total: -46.73 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.76 Total: -3.95 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -89.72 3.09 -86.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802339617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.496 kcal (2) G-P(sol) polarization free energy of solvation -89.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds