Wall clock time and date at job start Tue Mar 31 2020 14:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37977 * 120.04422 * 2 1 4 4 C 1.38313 * 120.17602 * 179.97438 * 3 2 1 5 5 C 1.38602 * 120.27775 * 359.97438 * 4 3 2 6 6 F 1.35099 * 119.94977 * 180.02562 * 5 4 3 7 7 C 1.38161 * 120.09738 * 359.79607 * 5 4 3 8 8 C 1.39601 * 120.05508 * 179.97438 * 2 1 3 9 9 C 1.47732 * 120.13586 * 0.02562 * 8 2 1 10 10 O 1.21473 * 120.00048 * 354.08275 * 9 8 2 11 11 O 1.34711 * 120.00302 * 174.08596 * 9 8 2 12 12 C 1.45204 * 117.00276 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46691 * 30.00209 * 12 11 9 14 14 C 1.52996 * 109.47076 * 270.00201 * 12 11 9 15 15 C 1.50693 * 109.46983 * 150.00058 * 12 11 9 16 16 O 1.21281 * 120.00303 * 15.48568 * 15 12 11 17 17 N 1.34779 * 120.00026 * 195.48112 * 15 12 11 18 18 C 1.46504 * 119.99745 * 5.11085 * 17 15 12 19 19 C 1.46501 * 119.99929 * 185.10501 * 17 15 12 20 20 C 1.50704 * 109.46996 * 90.00475 * 19 17 15 21 21 H 1.08002 * 120.00008 * 0.02562 * 20 19 17 22 22 C 1.37868 * 119.99827 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00553 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47134 * 59.99553 * 24 22 20 26 26 H 1.48504 * 109.47241 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46961 * 299.99888 * 24 22 20 28 28 H 1.08999 * 109.46995 * 262.71684 * 1 2 3 29 29 H 1.09000 * 109.47614 * 22.72032 * 1 2 3 30 30 H 1.09005 * 109.46565 * 142.72038 * 1 2 3 31 31 H 1.07998 * 119.91586 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.85997 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.09102 * 180.23388 * 7 5 4 34 34 H 1.09003 * 109.47635 * 56.77752 * 14 12 11 35 35 H 1.08996 * 109.47131 * 176.77771 * 14 12 11 36 36 H 1.09000 * 109.47721 * 296.77797 * 14 12 11 37 37 H 1.08993 * 109.46931 * 91.66658 * 18 17 15 38 38 H 1.09001 * 109.46676 * 211.66710 * 18 17 15 39 39 H 1.08996 * 109.47107 * 331.66248 * 18 17 15 40 40 H 1.09004 * 109.46924 * 209.99937 * 19 17 15 41 41 H 1.08993 * 109.47569 * 330.00551 * 19 17 15 42 42 H 0.97004 * 120.00663 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1944 0.0000 4 6 3.5809 1.1976 0.0005 5 6 4.2825 0.0022 0.0016 6 9 5.6335 0.0131 0.0026 7 6 3.6023 -1.2003 0.0064 8 6 2.2062 -1.2083 0.0005 9 6 1.4718 -2.4902 0.0005 10 8 0.2619 -2.4970 0.1085 11 8 2.1438 -3.6515 -0.1191 12 6 1.3574 -4.8722 -0.1108 13 1 0.3709 -4.6715 -0.5285 14 6 1.2102 -5.3741 1.3270 15 6 2.0504 -5.9218 -0.9408 16 8 3.2142 -5.7789 -1.2509 17 7 1.3770 -7.0194 -1.3384 18 6 -0.0564 -7.1402 -1.0604 19 6 2.0782 -8.0917 -2.0488 20 6 2.6122 -9.0887 -1.0528 21 1 2.4454 -8.9388 0.0037 22 6 3.3126 -10.1927 -1.4903 23 7 3.5144 -10.3761 -2.7768 24 14 3.9739 -11.4288 -0.2557 25 1 2.8465 -12.0039 0.5213 26 1 4.6838 -12.5164 -0.9758 27 1 4.9164 -10.7492 0.6688 28 1 -0.3633 -0.1303 1.0194 29 1 -0.3634 0.9479 -0.3969 30 1 -0.3633 -0.8178 -0.6225 31 1 1.6572 2.1293 -0.0004 32 1 4.1165 2.1354 0.0010 33 1 4.1491 -2.1317 0.0111 34 1 0.7608 -4.5930 1.9404 35 1 0.5725 -6.2579 1.3398 36 1 2.1922 -5.6289 1.7254 37 1 -0.6243 -6.7419 -1.9011 38 1 -0.3110 -8.1899 -0.9145 39 1 -0.3001 -6.5785 -0.1586 40 1 1.3865 -8.5910 -2.7274 41 1 2.9054 -7.6694 -2.6192 42 1 4.0075 -11.1526 -3.0846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806332022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:52 Heat of formation + Delta-G solvation = -132.666516 kcal Electronic energy + Delta-G solvation = -27074.497949 eV Core-core repulsion = 22934.764448 eV Total energy + Delta-G solvation = -4139.733502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.12958 -40.99869 -39.49398 -38.59009 -36.50447 -34.91773 -32.93281 -32.64762 -32.21206 -31.24779 -27.81489 -27.23350 -26.10770 -25.06646 -24.15585 -22.85891 -21.89583 -20.93832 -18.89778 -18.54986 -17.41650 -16.63262 -16.61481 -16.50570 -16.11241 -15.93632 -15.75418 -15.57392 -15.03620 -14.64549 -14.35246 -14.17774 -13.94942 -13.77969 -13.44722 -13.20188 -12.83460 -12.48724 -12.37578 -12.18104 -12.16282 -12.08772 -12.04470 -11.77958 -11.74807 -11.44754 -11.25150 -10.94485 -10.76486 -10.58734 -10.31090 -10.19653 -9.69849 -9.57456 -8.95731 -8.91658 -8.46968 -7.75005 -6.08003 -4.13654 0.24804 0.77887 2.23008 2.34419 3.19702 3.25260 3.29944 3.34709 3.38174 3.76072 3.91704 4.24909 4.40487 4.43072 4.52483 4.64750 4.79522 4.85069 4.98153 5.06855 5.25010 5.26559 5.34437 5.45482 5.47794 5.53863 5.59466 5.65780 5.67273 5.74396 5.85373 5.89033 6.03715 6.09833 6.21297 6.34920 6.45675 6.96150 7.37618 7.43439 7.59596 7.87554 8.17239 8.26193 8.80744 8.95773 9.51566 11.00098 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002891 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.151731 B = 9684.194710 C =10615.031146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.029 4.029 3 C -0.108 4.108 4 C -0.115 4.115 5 C 0.080 3.920 6 F -0.134 7.134 7 C -0.089 4.089 8 C -0.099 4.099 9 C 0.508 3.492 10 O -0.498 6.498 11 O -0.321 6.321 12 C 0.072 3.928 13 H 0.105 0.895 14 C -0.164 4.164 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.072 3.928 19 C 0.246 3.754 20 C -0.531 4.531 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 22.355 6.930 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.029 4.029 3 C -0.126 4.126 4 C -0.134 4.134 5 C 0.061 3.939 6 F -0.112 7.112 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.353 3.647 10 O -0.388 6.388 11 O -0.236 6.236 12 C 0.013 3.987 13 H 0.122 0.878 14 C -0.221 4.221 15 C 0.294 3.706 16 O -0.395 6.395 17 N -0.329 5.329 18 C -0.071 4.071 19 C 0.128 3.872 20 C -0.570 4.570 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.174 0.826 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.979 22.221 6.633 24.218 hybrid contribution 0.568 -0.868 0.672 1.236 sum -6.412 21.353 7.305 23.461 Atomic orbital electron populations 1.21132 0.89254 1.03511 1.04031 1.20122 0.97431 0.90969 0.94400 1.20872 0.92970 0.97829 1.00939 1.21427 0.94991 0.97456 0.99538 1.17523 0.77403 0.94139 1.04849 1.91543 1.28374 1.97330 1.94001 1.21598 0.93733 0.98714 0.96703 1.18752 0.92502 0.90511 1.08255 1.21042 0.85925 0.84667 0.73049 1.90775 1.14608 1.87579 1.45870 1.86670 1.40500 1.13869 1.82516 1.22715 0.95514 0.81995 0.98435 0.87775 1.22167 1.04222 1.02380 0.93377 1.19741 0.87256 0.82586 0.81053 1.90702 1.16240 1.77154 1.55440 1.48076 1.08915 1.19158 1.56766 1.21856 0.81927 1.03520 0.99846 1.19358 0.92789 0.83072 0.92031 1.21383 1.35474 1.06692 0.93442 0.92390 1.24932 0.95747 0.97957 0.95370 1.69917 1.40871 1.29165 1.13263 0.86545 0.79168 0.80513 0.81122 1.20209 1.21129 1.20117 0.90150 0.91757 0.88613 0.83962 0.84025 0.82558 0.91231 0.89434 0.90603 0.93293 0.90247 0.92054 0.94612 0.93564 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.71 36.01 0.31 -0.75 16 2 C -0.03 -0.28 5.91 -104.21 -0.62 -0.89 16 3 C -0.11 -0.81 9.66 -39.65 -0.38 -1.19 16 4 C -0.12 -0.92 10.02 -39.42 -0.39 -1.32 16 5 C 0.08 0.85 7.29 -39.48 -0.29 0.56 16 6 F -0.13 -1.56 17.26 2.25 0.04 -1.52 16 7 C -0.09 -1.06 9.59 -39.09 -0.38 -1.43 16 8 C -0.10 -1.20 5.87 -104.99 -0.62 -1.81 16 9 C 0.51 7.23 7.81 34.61 0.27 7.50 16 10 O -0.50 -7.15 12.61 -19.25 -0.24 -7.40 16 11 O -0.32 -5.31 8.73 -47.06 -0.41 -5.72 16 12 C 0.07 1.18 2.13 -27.89 -0.06 1.12 16 13 H 0.10 1.53 6.24 -51.93 -0.32 1.21 16 14 C -0.16 -2.29 9.26 37.16 0.34 -1.94 16 15 C 0.51 10.84 6.96 -10.99 -0.08 10.76 16 16 O -0.52 -13.41 16.13 -13.58 -0.22 -13.62 16 17 N -0.60 -12.56 2.86 -182.96 -0.52 -13.08 16 18 C 0.07 1.12 9.96 59.85 0.60 1.72 16 19 C 0.25 6.39 5.21 -5.19 -0.03 6.36 16 20 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.77 5.46 -17.83 -0.10 1.67 16 23 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 24 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.40 8.03 -51.93 -0.42 -0.02 16 30 H 0.10 1.01 5.90 -51.93 -0.31 0.70 16 31 H 0.14 0.63 8.05 -52.49 -0.42 0.21 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.16 1.99 7.63 -52.49 -0.40 1.59 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.12 6.25 -51.93 -0.32 0.79 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 39 H 0.06 0.78 4.57 -51.93 -0.24 0.54 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -33.62 361.89 -7.23 -40.85 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.31 Total: -1.11 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.73 Total: 5.19 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.21 Total: -38.72 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.87 Total: -26.74 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.62 -7.23 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806332022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.817 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds