Wall clock time and date at job start Tue Mar 31 2020 14:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37977 * 120.04422 * 2 1 4 4 C 1.38313 * 120.17602 * 179.97438 * 3 2 1 5 5 C 1.38602 * 120.27775 * 359.97438 * 4 3 2 6 6 F 1.35099 * 119.94977 * 180.02562 * 5 4 3 7 7 C 1.38161 * 120.09738 * 359.79607 * 5 4 3 8 8 C 1.39601 * 120.05508 * 179.97438 * 2 1 3 9 9 C 1.47732 * 120.13586 * 0.02562 * 8 2 1 10 10 O 1.21473 * 120.00048 * 354.08275 * 9 8 2 11 11 O 1.34711 * 120.00302 * 174.08596 * 9 8 2 12 12 C 1.45204 * 117.00276 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46691 * 30.00209 * 12 11 9 14 14 C 1.52996 * 109.47076 * 270.00201 * 12 11 9 15 15 C 1.50693 * 109.46983 * 150.00058 * 12 11 9 16 16 O 1.21281 * 120.00303 * 15.48568 * 15 12 11 17 17 N 1.34779 * 120.00026 * 195.48112 * 15 12 11 18 18 C 1.46504 * 119.99745 * 5.11085 * 17 15 12 19 19 C 1.46501 * 119.99929 * 185.10501 * 17 15 12 20 20 C 1.50704 * 109.46996 * 90.00475 * 19 17 15 21 21 H 1.08002 * 120.00008 * 0.02562 * 20 19 17 22 22 C 1.37868 * 119.99827 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00553 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47134 * 59.99553 * 24 22 20 26 26 H 1.48504 * 109.47241 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46961 * 299.99888 * 24 22 20 28 28 H 1.08999 * 109.46995 * 262.71684 * 1 2 3 29 29 H 1.09000 * 109.47614 * 22.72032 * 1 2 3 30 30 H 1.09005 * 109.46565 * 142.72038 * 1 2 3 31 31 H 1.07998 * 119.91586 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.85997 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.09102 * 180.23388 * 7 5 4 34 34 H 1.09003 * 109.47635 * 56.77752 * 14 12 11 35 35 H 1.08996 * 109.47131 * 176.77771 * 14 12 11 36 36 H 1.09000 * 109.47721 * 296.77797 * 14 12 11 37 37 H 1.08993 * 109.46931 * 91.66658 * 18 17 15 38 38 H 1.09001 * 109.46676 * 211.66710 * 18 17 15 39 39 H 1.08996 * 109.47107 * 331.66248 * 18 17 15 40 40 H 1.09004 * 109.46924 * 209.99937 * 19 17 15 41 41 H 1.08993 * 109.47569 * 330.00551 * 19 17 15 42 42 H 0.97004 * 120.00663 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1944 0.0000 4 6 3.5809 1.1976 0.0005 5 6 4.2825 0.0022 0.0016 6 9 5.6335 0.0131 0.0026 7 6 3.6023 -1.2003 0.0064 8 6 2.2062 -1.2083 0.0005 9 6 1.4718 -2.4902 0.0005 10 8 0.2619 -2.4970 0.1085 11 8 2.1438 -3.6515 -0.1191 12 6 1.3574 -4.8722 -0.1108 13 1 0.3709 -4.6715 -0.5285 14 6 1.2102 -5.3741 1.3270 15 6 2.0504 -5.9218 -0.9408 16 8 3.2142 -5.7789 -1.2509 17 7 1.3770 -7.0194 -1.3384 18 6 -0.0564 -7.1402 -1.0604 19 6 2.0782 -8.0917 -2.0488 20 6 2.6122 -9.0887 -1.0528 21 1 2.4454 -8.9388 0.0037 22 6 3.3126 -10.1927 -1.4903 23 7 3.5144 -10.3761 -2.7768 24 14 3.9739 -11.4288 -0.2557 25 1 2.8465 -12.0039 0.5213 26 1 4.6838 -12.5164 -0.9758 27 1 4.9164 -10.7492 0.6688 28 1 -0.3633 -0.1303 1.0194 29 1 -0.3634 0.9479 -0.3969 30 1 -0.3633 -0.8178 -0.6225 31 1 1.6572 2.1293 -0.0004 32 1 4.1165 2.1354 0.0010 33 1 4.1491 -2.1317 0.0111 34 1 0.7608 -4.5930 1.9404 35 1 0.5725 -6.2579 1.3398 36 1 2.1922 -5.6289 1.7254 37 1 -0.6243 -6.7419 -1.9011 38 1 -0.3110 -8.1899 -0.9145 39 1 -0.3001 -6.5785 -0.1586 40 1 1.3865 -8.5910 -2.7274 41 1 2.9054 -7.6694 -2.6192 42 1 4.0075 -11.1526 -3.0846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806332022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:51 Heat of formation + Delta-G solvation = -151.875665 kcal Electronic energy + Delta-G solvation = -27075.330921 eV Core-core repulsion = 22934.764448 eV Total energy + Delta-G solvation = -4140.566473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.98288 -42.12391 -40.83088 -39.72956 -37.70333 -36.71667 -34.88973 -33.48510 -33.32558 -32.32740 -29.72004 -27.99926 -27.59521 -26.23910 -25.53475 -24.27175 -22.94280 -21.96269 -20.43080 -19.60863 -18.70880 -18.51736 -17.92656 -17.65042 -17.30379 -16.98371 -16.74568 -16.67242 -16.48225 -16.24506 -15.91530 -15.04966 -14.88578 -14.76103 -14.56639 -14.42778 -14.22972 -14.01081 -13.65061 -13.56161 -13.36652 -13.22207 -13.12187 -12.94136 -12.82006 -12.77829 -12.62728 -12.55899 -12.52404 -12.20850 -11.97079 -11.75486 -11.29630 -10.66832 -10.65719 -10.32556 -9.69296 -9.54933 -8.24463 -6.39674 -0.57805 0.01748 1.13511 1.29985 1.36806 1.41316 1.47900 1.56893 2.28185 2.41008 2.44845 3.03687 3.05804 3.36049 3.42295 3.63785 3.71585 3.78390 3.80070 3.93167 4.10080 4.23986 4.46706 4.52575 4.56593 4.63701 4.69376 4.81352 4.84793 4.87262 4.87688 4.91899 5.03692 5.05816 5.11217 5.18681 5.25247 5.47490 5.49984 5.71505 5.76203 6.01311 6.44321 6.58664 6.69087 7.16873 7.33749 8.83059 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002891 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.151731 B = 9684.194710 C =10615.031146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.028 4.028 3 C -0.092 4.092 4 C -0.098 4.098 5 C 0.064 3.936 6 F -0.145 7.145 7 C -0.107 4.107 8 C -0.121 4.121 9 C 0.506 3.494 10 O -0.501 6.501 11 O -0.343 6.343 12 C 0.082 3.918 13 H 0.127 0.873 14 C -0.158 4.158 15 C 0.500 3.500 16 O -0.580 6.580 17 N -0.599 5.599 18 C 0.065 3.935 19 C 0.259 3.741 20 C -0.546 4.546 21 H 0.059 0.941 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.969 3.031 25 H -0.257 1.257 26 H -0.279 1.279 27 H -0.278 1.278 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.031 0.969 41 H -0.002 1.002 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 24.582 8.700 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.028 4.028 3 C -0.110 4.110 4 C -0.117 4.117 5 C 0.044 3.956 6 F -0.124 7.124 7 C -0.127 4.127 8 C -0.123 4.123 9 C 0.352 3.648 10 O -0.391 6.391 11 O -0.259 6.259 12 C 0.024 3.976 13 H 0.144 0.856 14 C -0.215 4.215 15 C 0.287 3.713 16 O -0.460 6.460 17 N -0.331 5.331 18 C -0.076 4.076 19 C 0.138 3.862 20 C -0.585 4.585 21 H 0.077 0.923 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.203 1.203 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.204 0.796 32 H 0.193 0.807 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.017 0.983 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.041 24.458 8.420 27.401 hybrid contribution 1.160 -1.441 0.066 1.850 sum -7.881 23.018 8.487 25.767 Atomic orbital electron populations 1.21133 0.88267 1.04380 1.03911 1.20426 0.98202 0.90724 0.93467 1.21346 0.92705 0.98473 0.98453 1.21825 0.95402 0.97445 0.96983 1.17752 0.77092 0.94785 1.05930 1.91512 1.29214 1.97398 1.94226 1.21463 0.94053 0.98672 0.98481 1.18790 0.92425 0.90407 1.10653 1.21444 0.86119 0.84529 0.72709 1.90760 1.14525 1.87535 1.46286 1.86684 1.41512 1.14619 1.83127 1.22587 0.95169 0.80944 0.98879 0.85576 1.22178 1.03877 1.03758 0.91698 1.20652 0.86787 0.83282 0.80574 1.90663 1.19029 1.78580 1.57681 1.48063 1.11082 1.18041 1.55958 1.22187 0.78465 1.04476 1.02482 1.18850 0.91672 0.83823 0.91832 1.21678 1.35853 1.07264 0.93696 0.92299 1.25874 0.95849 1.00054 0.97328 1.70044 1.41557 1.29945 1.15250 0.85451 0.78841 0.77868 0.78565 1.18176 1.20458 1.20316 0.89849 0.88594 0.90792 0.79633 0.80685 0.84959 0.88788 0.87820 0.92268 0.90894 0.90227 0.88652 0.95121 0.98341 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 8.71 71.24 0.62 -1.11 16 2 C -0.03 -0.47 5.91 -19.60 -0.12 -0.59 16 3 C -0.09 -1.00 9.66 22.23 0.21 -0.78 16 4 C -0.10 -1.26 10.02 22.37 0.22 -1.04 16 5 C 0.06 1.32 7.29 22.34 0.16 1.48 16 6 F -0.14 -3.41 17.26 44.97 0.78 -2.63 16 7 C -0.11 -2.70 9.59 22.58 0.22 -2.48 16 8 C -0.12 -2.93 5.87 -20.11 -0.12 -3.05 16 9 C 0.51 14.49 7.81 70.33 0.55 15.04 16 10 O -0.50 -13.88 12.61 19.92 0.25 -13.63 16 11 O -0.34 -11.80 8.73 -49.96 -0.44 -12.24 16 12 C 0.08 2.69 2.13 29.84 0.06 2.76 16 13 H 0.13 3.53 6.24 -2.39 -0.01 3.52 16 14 C -0.16 -4.22 9.26 71.98 0.67 -3.55 16 15 C 0.50 22.09 6.96 87.65 0.61 22.70 16 16 O -0.58 -31.99 16.13 15.26 0.25 -31.74 16 17 N -0.60 -25.84 2.86 -851.14 -2.43 -28.27 16 18 C 0.07 1.94 9.96 127.77 1.27 3.21 16 19 C 0.26 14.09 5.21 85.63 0.45 14.54 16 20 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 21 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 22 C 0.01 0.47 5.46 84.65 0.46 0.93 16 23 N -0.93 -56.33 13.29 21.44 0.28 -56.05 16 24 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 25 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 0.76 8.03 -2.39 -0.02 0.74 16 30 H 0.07 1.43 5.90 -2.38 -0.01 1.42 16 31 H 0.19 0.46 8.05 -2.91 -0.02 0.44 16 32 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.13 3.83 7.63 -2.91 -0.02 3.81 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.10 2.40 6.25 -2.39 -0.01 2.38 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 39 H 0.10 2.16 4.57 -2.39 -0.01 2.15 16 40 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 41 H 0.00 -0.10 7.36 -2.39 -0.02 -0.12 16 42 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -78.46 361.89 7.28 -71.18 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.05 Total: 9.73 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.51 Total: 16.96 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -2.15 Total: -84.32 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: 0.06 Total: -57.61 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -78.46 7.28 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806332022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.698 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds