Wall clock time and date at job start Tue Mar 31 2020 14:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37976 * 120.04778 * 2 1 4 4 C 1.38307 * 120.17597 * 179.97438 * 3 2 1 5 5 C 1.38601 * 120.27957 * 359.97438 * 4 3 2 6 6 F 1.35102 * 119.94973 * 180.02562 * 5 4 3 7 7 C 1.38158 * 120.09709 * 359.79067 * 5 4 3 8 8 C 1.39600 * 120.05326 * 179.97438 * 2 1 3 9 9 C 1.47740 * 120.13518 * 0.02562 * 8 2 1 10 10 O 1.21466 * 119.99900 * 354.03491 * 9 8 2 11 11 O 1.34711 * 119.99962 * 174.03596 * 9 8 2 12 12 C 1.45201 * 116.99959 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47183 * 330.00531 * 12 11 9 14 14 C 1.53003 * 109.46714 * 90.00133 * 12 11 9 15 15 C 1.50698 * 109.47251 * 209.99814 * 12 11 9 16 16 O 1.21289 * 119.99765 * 355.00329 * 15 12 11 17 17 N 1.34776 * 120.00330 * 175.00090 * 15 12 11 18 18 C 1.46499 * 119.99333 * 0.02562 * 17 15 12 19 19 C 1.46495 * 119.99992 * 180.02562 * 17 15 12 20 20 C 1.50704 * 109.47225 * 90.00372 * 19 17 15 21 21 H 1.08001 * 119.99651 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00148 * 180.02562 * 20 19 17 23 23 N 1.31510 * 119.99864 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99878 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46643 * 90.00316 * 24 22 20 26 26 H 1.48499 * 109.47085 * 209.99958 * 24 22 20 27 27 H 1.48501 * 109.47265 * 330.00395 * 24 22 20 28 28 H 1.08996 * 109.47253 * 263.43230 * 1 2 3 29 29 H 1.09000 * 109.47214 * 23.43746 * 1 2 3 30 30 H 1.08997 * 109.46983 * 143.43326 * 1 2 3 31 31 H 1.08001 * 119.91160 * 359.97438 * 3 2 1 32 32 H 1.08008 * 119.85690 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.09017 * 180.22936 * 7 5 4 34 34 H 1.09000 * 109.46890 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47057 * 299.99546 * 14 12 11 36 36 H 1.09002 * 109.47456 * 60.00160 * 14 12 11 37 37 H 1.09001 * 109.47277 * 90.00509 * 18 17 15 38 38 H 1.09005 * 109.46912 * 209.99942 * 18 17 15 39 39 H 1.08998 * 109.47719 * 329.99449 * 18 17 15 40 40 H 1.09001 * 109.47101 * 209.99980 * 19 17 15 41 41 H 1.08996 * 109.47593 * 329.99643 * 19 17 15 42 42 H 0.96999 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5810 1.1974 0.0005 5 6 4.2825 0.0021 0.0016 6 9 5.6335 0.0129 0.0026 7 6 3.6023 -1.2004 0.0065 8 6 2.2061 -1.2083 0.0005 9 6 1.4716 -2.4902 0.0005 10 8 0.2619 -2.4970 0.1094 11 8 2.1436 -3.6515 -0.1202 12 6 1.3572 -4.8721 -0.1117 13 1 0.4629 -4.7239 0.4935 14 6 0.9510 -5.2269 -1.5435 15 6 2.1776 -5.9942 0.4703 16 8 3.3413 -5.8089 0.7575 17 7 1.6182 -7.2037 0.6719 18 6 0.2127 -7.4276 0.3246 19 6 2.4156 -8.2944 1.2383 20 6 2.3024 -8.2716 2.7409 21 1 1.6973 -7.5196 3.2255 22 6 2.9721 -9.2101 3.4970 23 7 2.8737 -9.1899 4.8082 24 14 4.0192 -10.5103 2.6588 25 1 5.4075 -10.0055 2.5071 26 1 4.0289 -11.7452 3.4834 27 1 3.4537 -10.8137 1.3196 28 1 -0.3633 -0.1175 1.0209 29 1 -0.3634 0.9429 -0.4087 30 1 -0.3633 -0.8254 -0.6122 31 1 1.6572 2.1293 -0.0004 32 1 4.1166 2.1354 0.0010 33 1 4.1490 -2.1318 0.0111 34 1 0.3603 -6.1429 -1.5372 35 1 0.3576 -4.4153 -1.9645 36 1 1.8453 -5.3750 -2.1489 37 1 0.1436 -7.7702 -0.7079 38 1 -0.2094 -8.1833 0.9871 39 1 -0.3421 -6.4961 0.4362 40 1 2.0469 -9.2481 0.8606 41 1 3.4593 -8.1688 0.9505 42 1 3.3446 -9.8504 5.3401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806332023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:54 Heat of formation + Delta-G solvation = -126.739067 kcal Electronic energy + Delta-G solvation = -27145.913670 eV Core-core repulsion = 23006.437202 eV Total energy + Delta-G solvation = -4139.476468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.11086 -41.00423 -39.55394 -38.64532 -36.52245 -35.07218 -32.94637 -32.62493 -32.19588 -31.31543 -28.35244 -27.21499 -26.32677 -25.07671 -24.12327 -22.69366 -21.77797 -20.91967 -18.96081 -18.55701 -17.44109 -16.99305 -16.61703 -16.48595 -16.26699 -15.91672 -15.75081 -15.62664 -15.09286 -14.82633 -14.18136 -14.14530 -13.79356 -13.75010 -13.52101 -13.41337 -12.98626 -12.47358 -12.46237 -12.36600 -12.27806 -12.13964 -12.03201 -11.88016 -11.74625 -11.58434 -11.43106 -10.99380 -10.76603 -10.55765 -10.30723 -10.18252 -9.58263 -9.55646 -9.06504 -8.89983 -8.62047 -7.83232 -6.11576 -4.11326 0.26653 0.79968 2.24391 2.32649 3.13220 3.26749 3.27408 3.33159 3.35192 3.68138 3.89710 4.25962 4.36788 4.43260 4.54203 4.64171 4.71406 4.83559 4.90747 5.00081 5.21410 5.25828 5.34763 5.44318 5.50785 5.54534 5.55992 5.58207 5.61568 5.73856 5.76182 5.89643 5.92092 6.07485 6.13354 6.34853 6.46722 6.61267 6.86372 7.19836 7.55311 7.59377 8.06726 8.41763 8.78110 8.91716 9.47625 11.01715 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.003073 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.265827 B = 9109.691790 C = 9995.661065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.028 4.028 3 C -0.108 4.108 4 C -0.115 4.115 5 C 0.080 3.920 6 F -0.134 7.134 7 C -0.088 4.088 8 C -0.099 4.099 9 C 0.509 3.491 10 O -0.497 6.497 11 O -0.320 6.320 12 C 0.072 3.928 13 H 0.110 0.890 14 C -0.170 4.170 15 C 0.511 3.489 16 O -0.518 6.518 17 N -0.591 5.591 18 C 0.075 3.925 19 C 0.217 3.783 20 C -0.533 4.533 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.265 1.265 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 18.743 -14.459 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.126 4.126 4 C -0.134 4.134 5 C 0.061 3.939 6 F -0.113 7.113 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.354 3.646 10 O -0.387 6.387 11 O -0.235 6.235 12 C 0.014 3.986 13 H 0.127 0.873 14 C -0.228 4.228 15 C 0.295 3.705 16 O -0.393 6.393 17 N -0.324 5.324 18 C -0.068 4.068 19 C 0.097 3.903 20 C -0.571 4.571 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.198 18.670 -14.099 23.966 hybrid contribution 0.728 -0.776 -0.096 1.068 sum -4.470 17.894 -14.195 23.274 Atomic orbital electron populations 1.21146 0.89253 1.03479 1.04148 1.20123 0.97437 0.90961 0.94350 1.20868 0.92969 0.97829 1.00959 1.21425 0.94991 0.97450 0.99518 1.17520 0.77397 0.94139 1.04886 1.91542 1.28381 1.97331 1.94009 1.21599 0.93734 0.98728 0.96646 1.18740 0.92498 0.90466 1.08307 1.21027 0.85936 0.84628 0.72964 1.90775 1.14625 1.87461 1.45821 1.86648 1.40557 1.13819 1.82511 1.22628 0.94674 0.81911 0.99392 0.87272 1.22294 1.02964 1.03565 0.93938 1.19765 0.87846 0.83189 0.79676 1.90712 1.16776 1.81342 1.50473 1.47726 1.11581 1.11238 1.61868 1.21882 0.82465 1.02352 1.00117 1.19724 0.91764 0.83929 0.94861 1.21318 1.31102 1.15675 0.89052 0.90721 1.24858 0.95931 0.97447 0.94723 1.69895 1.42982 1.35965 1.04532 0.86841 0.81667 0.81342 0.79777 1.19827 1.21007 1.19019 0.90048 0.91771 0.88595 0.83956 0.84023 0.82542 0.89182 0.91123 0.90930 0.92976 0.90033 0.91984 0.94800 0.94348 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.73 36.01 0.31 -0.79 16 2 C -0.03 -0.28 5.91 -104.21 -0.62 -0.90 16 3 C -0.11 -0.84 9.66 -39.65 -0.38 -1.22 16 4 C -0.12 -0.95 10.02 -39.42 -0.39 -1.35 16 5 C 0.08 0.87 7.29 -39.48 -0.29 0.58 16 6 F -0.13 -1.59 17.26 2.25 0.04 -1.55 16 7 C -0.09 -1.08 9.59 -39.10 -0.38 -1.46 16 8 C -0.10 -1.23 5.87 -104.99 -0.62 -1.85 16 9 C 0.51 7.41 7.80 34.61 0.27 7.68 16 10 O -0.50 -7.36 12.59 -19.24 -0.24 -7.60 16 11 O -0.32 -5.28 8.69 -47.19 -0.41 -5.69 16 12 C 0.07 1.16 2.17 -27.88 -0.06 1.10 16 13 H 0.11 1.68 6.15 -51.93 -0.32 1.36 16 14 C -0.17 -2.05 9.27 37.16 0.34 -1.71 16 15 C 0.51 10.58 7.10 -10.99 -0.08 10.51 16 16 O -0.52 -13.03 16.09 -14.06 -0.23 -13.26 16 17 N -0.59 -11.98 2.86 -182.96 -0.52 -12.50 16 18 C 0.08 1.11 8.92 59.85 0.53 1.64 16 19 C 0.22 5.25 4.23 -5.19 -0.02 5.22 16 20 C -0.53 -15.28 9.94 -34.44 -0.34 -15.63 16 21 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 22 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 24 Si 0.88 21.40 27.47 -169.99 -4.67 16.74 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.40 8.04 -51.93 -0.42 -0.01 16 30 H 0.10 1.00 5.84 -51.93 -0.30 0.70 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.16 2.06 7.63 -52.49 -0.40 1.66 16 34 H 0.09 0.93 5.12 -51.93 -0.27 0.67 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.60 7.02 -51.93 -0.36 0.24 16 38 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.06 0.77 6.07 -51.93 -0.32 0.46 16 40 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 41 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -35.05 356.50 -6.93 -41.99 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.23 Total: -0.51 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.81 Total: 3.86 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.25 Total: -39.34 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.88 Total: -26.55 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.05 -6.93 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806332023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.754 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds