Wall clock time and date at job start Tue Mar 31 2020 14:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37976 * 120.04778 * 2 1 4 4 C 1.38307 * 120.17597 * 179.97438 * 3 2 1 5 5 C 1.38601 * 120.27957 * 359.97438 * 4 3 2 6 6 F 1.35102 * 119.94973 * 180.02562 * 5 4 3 7 7 C 1.38158 * 120.09709 * 359.79067 * 5 4 3 8 8 C 1.39600 * 120.05326 * 179.97438 * 2 1 3 9 9 C 1.47740 * 120.13518 * 0.02562 * 8 2 1 10 10 O 1.21466 * 119.99900 * 354.03491 * 9 8 2 11 11 O 1.34711 * 119.99962 * 174.03596 * 9 8 2 12 12 C 1.45201 * 116.99959 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47183 * 330.00531 * 12 11 9 14 14 C 1.53003 * 109.46714 * 90.00133 * 12 11 9 15 15 C 1.50698 * 109.47251 * 209.99814 * 12 11 9 16 16 O 1.21289 * 119.99765 * 355.00329 * 15 12 11 17 17 N 1.34776 * 120.00330 * 175.00090 * 15 12 11 18 18 C 1.46499 * 119.99333 * 0.02562 * 17 15 12 19 19 C 1.46495 * 119.99992 * 180.02562 * 17 15 12 20 20 C 1.50704 * 109.47225 * 90.00372 * 19 17 15 21 21 H 1.08001 * 119.99651 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00148 * 180.02562 * 20 19 17 23 23 N 1.31510 * 119.99864 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99878 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46643 * 90.00316 * 24 22 20 26 26 H 1.48499 * 109.47085 * 209.99958 * 24 22 20 27 27 H 1.48501 * 109.47265 * 330.00395 * 24 22 20 28 28 H 1.08996 * 109.47253 * 263.43230 * 1 2 3 29 29 H 1.09000 * 109.47214 * 23.43746 * 1 2 3 30 30 H 1.08997 * 109.46983 * 143.43326 * 1 2 3 31 31 H 1.08001 * 119.91160 * 359.97438 * 3 2 1 32 32 H 1.08008 * 119.85690 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.09017 * 180.22936 * 7 5 4 34 34 H 1.09000 * 109.46890 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47057 * 299.99546 * 14 12 11 36 36 H 1.09002 * 109.47456 * 60.00160 * 14 12 11 37 37 H 1.09001 * 109.47277 * 90.00509 * 18 17 15 38 38 H 1.09005 * 109.46912 * 209.99942 * 18 17 15 39 39 H 1.08998 * 109.47719 * 329.99449 * 18 17 15 40 40 H 1.09001 * 109.47101 * 209.99980 * 19 17 15 41 41 H 1.08996 * 109.47593 * 329.99643 * 19 17 15 42 42 H 0.96999 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5810 1.1974 0.0005 5 6 4.2825 0.0021 0.0016 6 9 5.6335 0.0129 0.0026 7 6 3.6023 -1.2004 0.0065 8 6 2.2061 -1.2083 0.0005 9 6 1.4716 -2.4902 0.0005 10 8 0.2619 -2.4970 0.1094 11 8 2.1436 -3.6515 -0.1202 12 6 1.3572 -4.8721 -0.1117 13 1 0.4629 -4.7239 0.4935 14 6 0.9510 -5.2269 -1.5435 15 6 2.1776 -5.9942 0.4703 16 8 3.3413 -5.8089 0.7575 17 7 1.6182 -7.2037 0.6719 18 6 0.2127 -7.4276 0.3246 19 6 2.4156 -8.2944 1.2383 20 6 2.3024 -8.2716 2.7409 21 1 1.6973 -7.5196 3.2255 22 6 2.9721 -9.2101 3.4970 23 7 2.8737 -9.1899 4.8082 24 14 4.0192 -10.5103 2.6588 25 1 5.4075 -10.0055 2.5071 26 1 4.0289 -11.7452 3.4834 27 1 3.4537 -10.8137 1.3196 28 1 -0.3633 -0.1175 1.0209 29 1 -0.3634 0.9429 -0.4087 30 1 -0.3633 -0.8254 -0.6122 31 1 1.6572 2.1293 -0.0004 32 1 4.1166 2.1354 0.0010 33 1 4.1490 -2.1318 0.0111 34 1 0.3603 -6.1429 -1.5372 35 1 0.3576 -4.4153 -1.9645 36 1 1.8453 -5.3750 -2.1489 37 1 0.1436 -7.7702 -0.7079 38 1 -0.2094 -8.1833 0.9871 39 1 -0.3421 -6.4961 0.4362 40 1 2.0469 -9.2481 0.8606 41 1 3.4593 -8.1688 0.9505 42 1 3.3446 -9.8504 5.3401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806332023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:54 Heat of formation + Delta-G solvation = -148.352404 kcal Electronic energy + Delta-G solvation = -27146.850894 eV Core-core repulsion = 23006.437202 eV Total energy + Delta-G solvation = -4140.413693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.99141 -42.14032 -40.88067 -39.74984 -37.72304 -36.78401 -34.89172 -33.52579 -33.34988 -32.38962 -30.18434 -28.01670 -27.70588 -26.16907 -25.41560 -24.08342 -22.91183 -21.97638 -20.46241 -19.62823 -19.17569 -18.54691 -17.92923 -17.57363 -17.38113 -17.06017 -16.73368 -16.68547 -16.55246 -16.30211 -15.67313 -15.08308 -14.93380 -14.84978 -14.56796 -14.45984 -14.43738 -14.13727 -13.75879 -13.64937 -13.47359 -13.24166 -13.08363 -12.89723 -12.83557 -12.79158 -12.63150 -12.55069 -12.43364 -12.05567 -11.95491 -11.77320 -11.29862 -10.85905 -10.71933 -10.33693 -9.70558 -9.53257 -8.36614 -6.43038 -0.59082 0.00628 1.12696 1.28052 1.32535 1.36991 1.45151 1.54153 2.26065 2.29570 2.43342 2.97746 3.02708 3.33013 3.40890 3.62308 3.70632 3.77556 3.80908 3.92199 4.09067 4.29601 4.45814 4.51018 4.59091 4.62417 4.68422 4.76348 4.79584 4.83999 4.86023 4.87680 4.89095 5.02477 5.07331 5.10237 5.23733 5.40962 5.46529 5.49863 5.70565 6.17960 6.41168 6.53440 6.58523 7.11349 7.24927 8.80481 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.003073 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.265827 B = 9109.691790 C = 9995.661065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.028 4.028 3 C -0.092 4.092 4 C -0.098 4.098 5 C 0.064 3.936 6 F -0.144 7.144 7 C -0.107 4.107 8 C -0.122 4.122 9 C 0.505 3.495 10 O -0.504 6.504 11 O -0.342 6.342 12 C 0.079 3.921 13 H 0.116 0.884 14 C -0.160 4.160 15 C 0.500 3.500 16 O -0.577 6.577 17 N -0.596 5.596 18 C 0.066 3.934 19 C 0.224 3.776 20 C -0.543 4.543 21 H 0.026 0.974 22 C 0.010 3.990 23 N -0.945 5.945 24 Si 0.950 3.050 25 H -0.278 1.278 26 H -0.274 1.274 27 H -0.232 1.232 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 20.154 -16.921 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.029 4.029 3 C -0.110 4.110 4 C -0.116 4.116 5 C 0.045 3.955 6 F -0.123 7.123 7 C -0.127 4.127 8 C -0.123 4.123 9 C 0.352 3.648 10 O -0.394 6.394 11 O -0.258 6.258 12 C 0.021 3.979 13 H 0.133 0.867 14 C -0.217 4.217 15 C 0.287 3.713 16 O -0.457 6.457 17 N -0.328 5.328 18 C -0.075 4.075 19 C 0.102 3.898 20 C -0.581 4.581 21 H 0.044 0.956 22 C -0.188 4.188 23 N -0.585 5.585 24 Si 0.772 3.228 25 H -0.203 1.203 26 H -0.199 1.199 27 H -0.155 1.155 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.204 0.796 32 H 0.194 0.806 33 H 0.150 0.850 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.596 20.084 -16.593 26.874 hybrid contribution 1.078 -1.067 0.747 1.691 sum -5.519 19.016 -15.847 25.361 Atomic orbital electron populations 1.21143 0.88329 1.04657 1.03667 1.20427 0.98184 0.90756 0.93491 1.21348 0.92734 0.98448 0.98436 1.21829 0.95375 0.97462 0.96937 1.17743 0.77105 0.94753 1.05907 1.91513 1.29169 1.97395 1.94223 1.21457 0.94021 0.98700 0.98482 1.18794 0.92457 0.90396 1.10681 1.21456 0.86113 0.84659 0.72596 1.90758 1.14713 1.87510 1.46402 1.86656 1.41631 1.14580 1.82966 1.22599 0.93208 0.80417 1.01695 0.86672 1.22304 1.03345 1.05258 0.90817 1.20661 0.87640 0.84209 0.78772 1.90670 1.19511 1.82458 1.53028 1.47811 1.13542 1.10407 1.61011 1.22262 0.79228 1.03666 1.02386 1.19434 0.91922 0.86459 0.91954 1.21563 1.30358 1.14423 0.91770 0.95576 1.25896 0.97315 1.00232 0.95328 1.70053 1.44489 1.37445 1.06519 0.85682 0.78951 0.77937 0.80181 1.20337 1.19929 1.15494 0.90571 0.88339 0.90324 0.79598 0.80596 0.84984 0.86914 0.89252 0.91214 0.88651 0.90641 0.89764 0.92009 0.96080 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.73 71.24 0.62 -1.27 16 2 C -0.03 -0.51 5.91 -19.60 -0.12 -0.63 16 3 C -0.09 -1.08 9.66 22.22 0.21 -0.86 16 4 C -0.10 -1.33 10.02 22.37 0.22 -1.10 16 5 C 0.06 1.38 7.29 22.34 0.16 1.54 16 6 F -0.14 -3.48 17.26 44.97 0.78 -2.70 16 7 C -0.11 -2.80 9.59 22.58 0.22 -2.58 16 8 C -0.12 -3.08 5.87 -20.10 -0.12 -3.20 16 9 C 0.51 15.15 7.80 70.33 0.55 15.70 16 10 O -0.50 -14.90 12.59 19.95 0.25 -14.64 16 11 O -0.34 -11.85 8.69 -49.84 -0.43 -12.29 16 12 C 0.08 2.54 2.17 29.85 0.06 2.60 16 13 H 0.12 3.52 6.15 -2.39 -0.01 3.51 16 14 C -0.16 -3.58 9.27 71.98 0.67 -2.91 16 15 C 0.50 21.35 7.10 87.66 0.62 21.97 16 16 O -0.58 -30.77 16.09 15.69 0.25 -30.51 16 17 N -0.60 -24.17 2.86 -851.13 -2.43 -26.60 16 18 C 0.07 1.80 8.92 127.77 1.14 2.94 16 19 C 0.22 10.86 4.23 85.64 0.36 11.23 16 20 C -0.54 -32.28 9.94 25.60 0.25 -32.03 16 21 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 22 C 0.01 0.62 5.47 84.66 0.46 1.08 16 23 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 24 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 0.84 8.04 -2.39 -0.02 0.82 16 30 H 0.08 1.54 5.84 -2.39 -0.01 1.52 16 31 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.13 3.96 7.63 -2.91 -0.02 3.94 16 34 H 0.11 1.96 5.12 -2.39 -0.01 1.94 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.83 7.02 -2.39 -0.02 1.81 16 38 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 39 H 0.08 1.93 6.07 -2.39 -0.01 1.91 16 40 H 0.06 2.66 7.13 -2.39 -0.02 2.64 16 41 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 42 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -83.35 356.50 6.93 -76.42 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.00 Total: 11.69 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 5.33 Total: 12.48 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.13 Total: -86.69 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: 0.07 Total: -57.44 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -83.35 6.93 -76.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806332023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.933 kcal (2) G-P(sol) polarization free energy of solvation -83.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds