Wall clock time and date at job start Tue Mar 31 2020 14:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30503 * 125.64481 * 2 1 4 4 C 1.34126 * 109.25106 * 180.28193 * 3 2 1 5 5 N 1.48030 * 125.99026 * 179.77214 * 4 3 2 6 6 O 1.21799 * 120.00022 * 179.97438 * 5 4 3 7 7 O 1.21799 * 119.99843 * 359.96780 * 5 4 3 8 8 C 1.34670 * 108.02108 * 359.74529 * 4 3 2 9 9 N 1.35041 * 125.65172 * 179.85569 * 2 1 3 10 10 C 1.46498 * 126.39659 * 359.97438 * 9 2 1 11 11 C 1.52994 * 109.47076 * 84.71580 * 10 9 2 12 12 C 1.50706 * 109.46932 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00278 * 359.97438 * 12 11 10 14 14 O 1.34230 * 119.99449 * 180.02562 * 12 11 10 15 15 C 1.45207 * 116.99874 * 185.34102 * 14 12 11 16 16 C 1.50705 * 112.84592 * 54.09565 * 15 14 12 17 17 H 1.07997 * 119.99854 * 246.10063 * 16 15 14 18 18 C 1.37874 * 119.99707 * 66.10458 * 16 15 14 19 19 N 1.31513 * 120.00085 * 353.99552 * 18 16 15 20 20 Si 1.86808 * 119.99730 * 174.00128 * 18 16 15 21 21 H 1.48495 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47181 * 119.99711 * 20 18 16 23 23 H 1.48504 * 109.46639 * 239.99793 * 20 18 16 24 24 C 1.53771 * 113.61619 * 185.29539 * 15 14 12 25 25 C 1.53777 * 87.08261 * 89.11795 * 24 15 14 26 26 C 1.53779 * 87.17279 * 25.38905 * 25 24 15 27 27 H 1.08993 * 109.47589 * 270.14431 * 1 2 3 28 28 H 1.09004 * 109.47061 * 30.15129 * 1 2 3 29 29 H 1.09000 * 109.47165 * 150.14437 * 1 2 3 30 30 H 1.08002 * 126.59267 * 180.02562 * 8 4 3 31 31 H 1.09002 * 109.47049 * 324.71099 * 10 9 2 32 32 H 1.09005 * 109.47238 * 204.71827 * 10 9 2 33 33 H 1.08993 * 109.47584 * 60.00014 * 11 10 9 34 34 H 1.09006 * 109.47108 * 299.99693 * 11 10 9 35 35 H 0.97005 * 119.99823 * 185.02550 * 19 18 16 36 36 H 1.08995 * 113.61817 * 334.56567 * 24 15 14 37 37 H 1.09003 * 113.69438 * 203.67784 * 24 15 14 38 38 H 1.09003 * 113.61703 * 139.98187 * 25 24 15 39 39 H 1.09001 * 113.61113 * 270.80023 * 25 24 15 40 40 H 1.08998 * 113.61255 * 89.16200 * 26 25 24 41 41 H 1.09002 * 113.61188 * 220.06448 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0062 5 7 4.7268 1.5855 -0.0131 6 8 5.8531 1.1217 -0.0179 7 8 4.5654 2.7928 -0.0140 8 6 3.5926 -0.6642 -0.0046 9 7 2.2941 -1.0973 0.0028 10 6 1.8426 -2.4910 0.0068 11 6 1.5585 -2.9391 -1.4282 12 6 1.0934 -4.3726 -1.4239 13 8 0.9993 -4.9742 -0.3803 14 8 0.7847 -4.9814 -2.5797 15 6 0.2310 -6.3209 -2.4919 16 6 -0.9775 -6.3968 -1.5948 17 1 -0.9326 -6.9608 -0.6750 18 6 -2.1405 -5.7462 -1.9486 19 7 -2.1610 -4.9640 -3.0057 20 14 -3.6871 -5.9755 -0.9262 21 1 -3.4025 -6.8988 0.2015 22 1 -4.1266 -4.6615 -0.3918 23 1 -4.7616 -6.5489 -1.7759 24 6 0.0265 -6.9937 -3.8594 25 6 1.4646 -7.5220 -3.7265 26 6 1.2859 -7.4045 -2.2037 27 1 -0.3634 0.0026 1.0276 28 1 -0.3633 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 4.4776 -1.2831 -0.0079 31 1 0.9328 -2.5764 0.6011 32 1 2.6189 -3.1232 0.4380 33 1 2.4682 -2.8537 -2.0224 34 1 0.7822 -2.3070 -1.8593 35 1 -2.9569 -4.4497 -3.2131 36 1 -0.1051 -6.2869 -4.6786 37 1 -0.7295 -7.7790 -3.8525 38 1 1.5868 -8.5479 -4.0740 39 1 2.2173 -6.8455 -4.1313 40 1 0.8749 -8.3021 -1.7417 41 1 2.1697 -7.0286 -1.6881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:54 Heat of formation + Delta-G solvation = -2.809071 kcal Electronic energy + Delta-G solvation = -27382.066829 eV Core-core repulsion = 23267.884331 eV Total energy + Delta-G solvation = -4114.182499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.21103 -41.78300 -39.69619 -37.50511 -36.56544 -35.36937 -34.32710 -32.55194 -32.53470 -31.08803 -28.61522 -26.84470 -26.28479 -24.79686 -24.65980 -22.71572 -21.93808 -20.86459 -20.26580 -19.11435 -18.52869 -18.41418 -17.73183 -17.51666 -16.76628 -16.16151 -15.80118 -15.40464 -15.07132 -14.88763 -14.64273 -14.28719 -14.07079 -13.65482 -13.37661 -13.14454 -12.78303 -12.67847 -12.21424 -11.73938 -11.65850 -11.64796 -11.48933 -11.44687 -11.33177 -11.18026 -11.08774 -10.76321 -10.59671 -10.52162 -10.28669 -10.19349 -10.11811 -9.60169 -9.32663 -9.01089 -8.72061 -8.59437 -6.29144 -4.39909 0.12533 1.03623 1.36704 2.06299 2.35504 3.05345 3.11234 3.20508 3.26003 3.59908 3.82940 4.09512 4.19947 4.31818 4.45100 4.48221 4.96724 5.00204 5.05421 5.17335 5.20746 5.33997 5.42219 5.48791 5.54734 5.58664 5.66669 5.71922 5.95199 6.22597 6.25868 6.30098 6.37499 6.59558 6.66539 7.00744 7.01973 7.09369 7.32257 7.56710 7.67299 7.72413 8.09007 8.63535 8.87417 9.29282 10.74712 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.003178 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.433822 B = 8807.896554 C = 9907.105016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.253 3.747 3 N -0.451 5.451 4 C 0.039 3.961 5 N 0.068 4.932 6 O -0.166 6.166 7 O -0.137 6.137 8 C 0.063 3.937 9 N -0.438 5.438 10 C 0.111 3.889 11 C -0.138 4.138 12 C 0.473 3.527 13 O -0.506 6.506 14 O -0.337 6.337 15 C 0.234 3.766 16 C -0.520 4.520 17 H 0.069 0.931 18 C 0.074 3.926 19 N -0.866 5.866 20 Si 0.891 3.109 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.095 4.095 25 C -0.153 4.153 26 C -0.151 4.151 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.206 0.794 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 4.539 3.029 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.012 4.012 3 N -0.171 5.171 4 C -0.170 4.170 5 N 0.589 4.411 6 O -0.376 6.376 7 O -0.358 6.358 8 C -0.080 4.080 9 N -0.119 5.119 10 C -0.010 4.010 11 C -0.177 4.177 12 C 0.314 3.686 13 O -0.395 6.395 14 O -0.252 6.252 15 C 0.200 3.800 16 C -0.557 4.557 17 H 0.087 0.913 18 C -0.131 4.131 19 N -0.503 5.503 20 Si 0.718 3.282 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.207 1.207 24 C -0.133 4.133 25 C -0.190 4.190 26 C -0.189 4.189 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.223 0.777 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.350 4.581 3.167 7.722 hybrid contribution -0.289 -0.548 0.517 0.807 sum 5.060 4.033 3.683 7.446 Atomic orbital electron populations 1.20476 0.82603 1.05727 1.04925 1.23578 0.96438 0.79294 1.01856 1.69734 0.98725 1.29136 1.19517 1.20558 0.87827 0.87444 1.21200 1.42249 1.00510 1.00886 0.97420 1.94552 1.07574 1.80656 1.54781 1.94575 1.92585 0.96267 1.52393 1.22389 0.89255 0.93826 1.02523 1.45905 1.05192 1.09404 1.51428 1.22030 1.04317 0.76001 0.98603 1.21650 1.04742 0.94925 0.96389 1.22180 0.75251 0.87592 0.83576 1.90600 1.49340 1.66455 1.33071 1.86372 1.71934 1.34085 1.32822 1.20736 0.89871 0.74798 0.94627 1.21237 0.93932 1.33392 1.07133 0.91331 1.25085 0.98788 0.94646 0.94591 1.70029 1.29238 1.25748 1.25259 0.86548 0.82909 0.78303 0.80440 1.19447 1.20878 1.20653 1.22731 0.94056 0.98612 0.97896 1.22997 0.98869 0.99768 0.97366 1.23460 0.99474 1.00916 0.95011 0.88863 0.88036 0.89019 0.77698 0.86368 0.86735 0.88016 0.87384 0.92701 0.91829 0.89855 0.92810 0.91336 0.90016 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.04 36.01 0.36 -0.32 16 2 C 0.25 2.91 7.90 -155.41 -1.23 1.68 16 3 N -0.45 -6.41 11.23 -7.88 -0.09 -6.50 16 4 C 0.04 0.54 8.02 -145.54 -1.17 -0.62 16 5 N 0.07 1.03 4.45 32.62 0.15 1.17 16 6 O -0.17 -2.38 19.02 -29.46 -0.56 -2.94 16 7 O -0.14 -2.24 19.24 -29.46 -0.57 -2.81 16 8 C 0.06 0.67 11.25 -16.56 -0.19 0.48 16 9 N -0.44 -4.57 2.75 -113.91 -0.31 -4.88 16 10 C 0.11 1.14 4.97 -4.05 -0.02 1.12 16 11 C -0.14 -1.76 6.13 -27.88 -0.17 -1.93 16 12 C 0.47 8.84 7.50 36.01 0.27 9.11 16 13 O -0.51 -10.50 14.37 -18.75 -0.27 -10.77 16 14 O -0.34 -7.32 9.89 -39.26 -0.39 -7.71 16 15 C 0.23 5.27 0.35 -90.87 -0.03 5.24 16 16 C -0.52 -13.04 6.83 -34.44 -0.24 -13.28 16 17 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 18 C 0.07 1.86 5.36 -17.82 -0.10 1.76 16 19 N -0.87 -22.12 12.80 55.43 0.71 -21.41 16 20 Si 0.89 19.56 29.55 -169.99 -5.02 14.54 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.10 -1.99 7.02 -25.93 -0.18 -2.17 16 25 C -0.15 -2.70 8.02 -25.92 -0.21 -2.91 16 26 C -0.15 -2.98 7.10 -25.83 -0.18 -3.16 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.78 7.34 -51.93 -0.38 0.40 16 30 H 0.21 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.22 7.90 -51.93 -0.41 0.81 16 32 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 1.37 7.64 -51.93 -0.40 0.97 16 35 H 0.26 6.42 8.32 -40.82 -0.34 6.08 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 41 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -30.73 363.36 -9.33 -40.05 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.37 Total: 0.78 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.08 Total: -5.00 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.45 Total: -31.62 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.78 Total: -24.23 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.73 -9.33 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.244 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds