Wall clock time and date at job start Tue Mar 31 2020 14:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30503 * 125.64481 * 2 1 4 4 C 1.34126 * 109.25106 * 180.28193 * 3 2 1 5 5 N 1.48030 * 125.99026 * 179.77214 * 4 3 2 6 6 O 1.21799 * 120.00022 * 179.97438 * 5 4 3 7 7 O 1.21799 * 119.99843 * 359.96780 * 5 4 3 8 8 C 1.34670 * 108.02108 * 359.74529 * 4 3 2 9 9 N 1.35041 * 125.65172 * 179.85569 * 2 1 3 10 10 C 1.46498 * 126.39659 * 359.97438 * 9 2 1 11 11 C 1.52994 * 109.47076 * 84.71580 * 10 9 2 12 12 C 1.50706 * 109.46932 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00278 * 359.97438 * 12 11 10 14 14 O 1.34230 * 119.99449 * 180.02562 * 12 11 10 15 15 C 1.45207 * 116.99874 * 185.34102 * 14 12 11 16 16 C 1.50705 * 112.84592 * 54.09565 * 15 14 12 17 17 H 1.07997 * 119.99854 * 246.10063 * 16 15 14 18 18 C 1.37874 * 119.99707 * 66.10458 * 16 15 14 19 19 N 1.31513 * 120.00085 * 353.99552 * 18 16 15 20 20 Si 1.86808 * 119.99730 * 174.00128 * 18 16 15 21 21 H 1.48495 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47181 * 119.99711 * 20 18 16 23 23 H 1.48504 * 109.46639 * 239.99793 * 20 18 16 24 24 C 1.53771 * 113.61619 * 185.29539 * 15 14 12 25 25 C 1.53777 * 87.08261 * 89.11795 * 24 15 14 26 26 C 1.53779 * 87.17279 * 25.38905 * 25 24 15 27 27 H 1.08993 * 109.47589 * 270.14431 * 1 2 3 28 28 H 1.09004 * 109.47061 * 30.15129 * 1 2 3 29 29 H 1.09000 * 109.47165 * 150.14437 * 1 2 3 30 30 H 1.08002 * 126.59267 * 180.02562 * 8 4 3 31 31 H 1.09002 * 109.47049 * 324.71099 * 10 9 2 32 32 H 1.09005 * 109.47238 * 204.71827 * 10 9 2 33 33 H 1.08993 * 109.47584 * 60.00014 * 11 10 9 34 34 H 1.09006 * 109.47108 * 299.99693 * 11 10 9 35 35 H 0.97005 * 119.99823 * 185.02550 * 19 18 16 36 36 H 1.08995 * 113.61817 * 334.56567 * 24 15 14 37 37 H 1.09003 * 113.69438 * 203.67784 * 24 15 14 38 38 H 1.09003 * 113.61703 * 139.98187 * 25 24 15 39 39 H 1.09001 * 113.61113 * 270.80023 * 25 24 15 40 40 H 1.08998 * 113.61255 * 89.16200 * 26 25 24 41 41 H 1.09002 * 113.61188 * 220.06448 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0062 5 7 4.7268 1.5855 -0.0131 6 8 5.8531 1.1217 -0.0179 7 8 4.5654 2.7928 -0.0140 8 6 3.5926 -0.6642 -0.0046 9 7 2.2941 -1.0973 0.0028 10 6 1.8426 -2.4910 0.0068 11 6 1.5585 -2.9391 -1.4282 12 6 1.0934 -4.3726 -1.4239 13 8 0.9993 -4.9742 -0.3803 14 8 0.7847 -4.9814 -2.5797 15 6 0.2310 -6.3209 -2.4919 16 6 -0.9775 -6.3968 -1.5948 17 1 -0.9326 -6.9608 -0.6750 18 6 -2.1405 -5.7462 -1.9486 19 7 -2.1610 -4.9640 -3.0057 20 14 -3.6871 -5.9755 -0.9262 21 1 -3.4025 -6.8988 0.2015 22 1 -4.1266 -4.6615 -0.3918 23 1 -4.7616 -6.5489 -1.7759 24 6 0.0265 -6.9937 -3.8594 25 6 1.4646 -7.5220 -3.7265 26 6 1.2859 -7.4045 -2.2037 27 1 -0.3634 0.0026 1.0276 28 1 -0.3633 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 4.4776 -1.2831 -0.0079 31 1 0.9328 -2.5764 0.6011 32 1 2.6189 -3.1232 0.4380 33 1 2.4682 -2.8537 -2.0224 34 1 0.7822 -2.3070 -1.8593 35 1 -2.9569 -4.4497 -3.2131 36 1 -0.1051 -6.2869 -4.6786 37 1 -0.7295 -7.7790 -3.8525 38 1 1.5868 -8.5479 -4.0740 39 1 2.2173 -6.8455 -4.1313 40 1 0.8749 -8.3021 -1.7417 41 1 2.1697 -7.0286 -1.6881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:53 Heat of formation + Delta-G solvation = -17.108975 kcal Electronic energy + Delta-G solvation = -27382.686919 eV Core-core repulsion = 23267.884331 eV Total energy + Delta-G solvation = -4114.802589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.14389 -42.86773 -41.23178 -39.00699 -37.68708 -36.42090 -35.87710 -34.42637 -33.37009 -32.13787 -29.53854 -28.52679 -27.38705 -26.34875 -25.78527 -24.27595 -22.93796 -22.05936 -21.37484 -20.12971 -20.02792 -19.59190 -19.09101 -18.79927 -17.97575 -17.18909 -17.10469 -16.80101 -16.56276 -16.50631 -15.74271 -15.56411 -15.26801 -14.88842 -14.45432 -14.18914 -13.87661 -13.59550 -13.42085 -13.32062 -13.20186 -13.03714 -12.82005 -12.80589 -12.57184 -12.53586 -12.34173 -12.29015 -11.97341 -11.79223 -11.70785 -11.65904 -11.48090 -11.11223 -10.81203 -10.45713 -10.29465 -10.22686 -8.17009 -6.32837 -0.94672 0.03838 0.45875 1.14333 1.34741 1.38474 1.41451 1.50413 1.64277 2.28475 2.39261 2.97255 3.11940 3.23833 3.46351 3.50292 3.67620 3.90664 3.99870 4.13005 4.16990 4.22296 4.30599 4.42320 4.54114 4.56974 4.62129 4.66965 4.70516 4.87867 4.96638 5.06147 5.10511 5.24248 5.36077 5.48259 5.51834 5.66231 5.76952 5.94540 6.08501 6.44879 6.63438 6.70914 7.28421 7.41622 8.85883 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.003178 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.433822 B = 8807.896554 C = 9907.105016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.258 3.742 3 N -0.489 5.489 4 C 0.007 3.993 5 N 0.070 4.930 6 O -0.140 6.140 7 O -0.198 6.198 8 C 0.094 3.906 9 N -0.433 5.433 10 C 0.121 3.879 11 C -0.125 4.125 12 C 0.464 3.536 13 O -0.530 6.530 14 O -0.352 6.352 15 C 0.215 3.785 16 C -0.533 4.533 17 H 0.048 0.952 18 C 0.040 3.960 19 N -0.887 5.887 20 Si 0.939 3.061 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.279 1.279 24 C -0.100 4.100 25 C -0.128 4.128 26 C -0.147 4.147 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.264 0.736 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 3.554 3.191 8.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 N -0.210 5.210 4 C -0.202 4.202 5 N 0.586 4.414 6 O -0.359 6.359 7 O -0.404 6.404 8 C -0.050 4.050 9 N -0.114 5.114 10 C 0.001 3.999 11 C -0.163 4.163 12 C 0.307 3.693 13 O -0.421 6.421 14 O -0.268 6.268 15 C 0.180 3.820 16 C -0.571 4.571 17 H 0.066 0.934 18 C -0.163 4.163 19 N -0.525 5.525 20 Si 0.765 3.235 21 H -0.200 1.200 22 H -0.202 1.202 23 H -0.204 1.204 24 C -0.138 4.138 25 C -0.165 4.165 26 C -0.185 4.185 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.260 0.740 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.980 3.725 3.330 7.793 hybrid contribution -0.471 -0.372 0.491 0.775 sum 5.509 3.353 3.821 7.496 Atomic orbital electron populations 1.20619 0.80945 1.06092 1.06101 1.24026 0.97278 0.78986 1.00477 1.69663 0.99487 1.30717 1.21150 1.20682 0.87352 0.88167 1.23988 1.42455 1.01040 1.00935 0.96949 1.94500 1.08186 1.80414 1.52799 1.94583 1.92868 0.97222 1.55758 1.22960 0.90201 0.92821 0.98972 1.45923 1.05072 1.09216 1.51172 1.21979 1.05186 0.75793 0.96950 1.21612 1.05620 0.90524 0.98557 1.23167 0.74307 0.89450 0.82407 1.90583 1.50346 1.67595 1.33540 1.86331 1.72259 1.33777 1.34433 1.20847 0.90167 0.75933 0.95024 1.21337 0.95599 1.33337 1.06818 0.93410 1.25585 1.00726 0.94533 0.95484 1.70092 1.29773 1.26426 1.26186 0.85799 0.80322 0.78236 0.79095 1.20025 1.20166 1.20425 1.22698 0.96198 0.98198 0.96696 1.22867 0.96693 1.01485 0.95501 1.23394 0.98638 0.99817 0.96670 0.87251 0.87591 0.88654 0.74004 0.86281 0.84868 0.85620 0.87159 0.92648 0.93318 0.90801 0.90060 0.90119 0.90285 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.04 71.24 0.72 -0.51 16 2 C 0.26 5.43 7.90 138.13 1.09 6.52 16 3 N -0.49 -13.52 11.23 -178.83 -2.01 -15.53 16 4 C 0.01 0.17 8.02 128.16 1.03 1.20 16 5 N 0.07 2.07 4.45 -50.70 -0.23 1.85 16 6 O -0.14 -3.80 19.02 18.89 0.36 -3.44 16 7 O -0.20 -6.73 19.24 18.89 0.36 -6.36 16 8 C 0.09 1.70 11.25 83.09 0.93 2.63 16 9 N -0.43 -7.69 2.75 -514.29 -1.41 -9.11 16 10 C 0.12 2.09 4.97 86.38 0.43 2.52 16 11 C -0.12 -2.82 6.13 29.85 0.18 -2.63 16 12 C 0.46 16.59 7.50 71.24 0.53 17.12 16 13 O -0.53 -21.38 14.37 21.98 0.32 -21.07 16 14 O -0.35 -14.97 9.89 -51.41 -0.51 -15.48 16 15 C 0.21 9.57 0.35 -10.96 0.00 9.57 16 16 C -0.53 -26.86 6.83 25.60 0.17 -26.68 16 17 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 18 C 0.04 1.99 5.36 84.65 0.45 2.44 16 19 N -0.89 -45.23 12.80 21.45 0.27 -44.96 16 20 Si 0.94 39.96 29.55 68.60 2.03 41.99 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 24 C -0.10 -4.13 7.02 31.12 0.22 -3.91 16 25 C -0.13 -4.25 8.02 31.12 0.25 -4.00 16 26 C -0.15 -5.63 7.10 31.18 0.22 -5.41 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.09 1.42 7.34 -2.39 -0.02 1.40 16 30 H 0.24 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.12 2.13 7.90 -2.39 -0.02 2.11 16 32 H 0.13 1.90 8.09 -2.38 -0.02 1.88 16 33 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.51 7.64 -2.38 -0.02 2.50 16 35 H 0.26 12.84 8.32 -92.70 -0.77 12.07 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 3.11 8.10 -2.39 -0.02 3.09 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 41 H 0.05 1.93 8.06 -2.39 -0.02 1.92 16 Total: -1.00 -67.76 363.36 6.47 -61.29 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.06 Total: 11.95 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 6.23 Total: -1.14 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -3.38 Total: -67.75 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: 0.53 Total: -46.35 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -67.76 6.47 -61.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.185 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds