Wall clock time and date at job start Tue Mar 31 2020 14:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30916 * 123.03342 * 2 1 4 4 C 1.29392 * 117.47107 * 179.97438 * 3 2 1 5 5 C 1.50697 * 124.71098 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47059 * 60.00375 * 5 4 3 7 7 C 1.52995 * 109.47316 * 180.02562 * 5 4 3 8 8 C 1.53007 * 109.47052 * 300.00766 * 5 4 3 9 9 S 1.70921 * 110.58379 * 359.75470 * 4 3 2 10 10 C 1.36755 * 123.04014 * 179.97438 * 2 1 3 11 11 C 1.46513 * 126.17145 * 359.97438 * 10 2 1 12 12 O 1.21611 * 119.99869 * 0.02562 * 11 10 2 13 13 O 1.34871 * 119.99601 * 180.02562 * 11 10 2 14 14 C 1.45200 * 116.99916 * 182.98617 * 13 11 10 15 15 C 1.50702 * 112.85093 * 294.88745 * 14 13 11 16 16 H 1.08001 * 119.99857 * 118.51904 * 15 14 13 17 17 C 1.37875 * 119.99794 * 298.52217 * 15 14 13 18 18 N 1.31515 * 120.00003 * 1.77297 * 17 15 14 19 19 Si 1.86794 * 119.99887 * 181.77364 * 17 15 14 20 20 H 1.48504 * 109.47217 * 179.97438 * 19 17 15 21 21 H 1.48506 * 109.47293 * 299.99728 * 19 17 15 22 22 H 1.48496 * 109.47370 * 59.99932 * 19 17 15 23 23 C 1.53789 * 113.61287 * 66.07989 * 14 13 11 24 24 C 1.53958 * 87.01490 * 89.23123 * 23 14 13 25 25 C 1.53774 * 87.11339 * 25.36081 * 24 23 14 26 26 H 1.09005 * 109.47089 * 270.02244 * 1 2 3 27 27 H 1.08998 * 109.47198 * 30.02031 * 1 2 3 28 28 H 1.08995 * 109.47013 * 150.02107 * 1 2 3 29 29 H 1.08998 * 109.46599 * 59.99837 * 6 5 4 30 30 H 1.08999 * 109.47029 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.46670 * 300.00334 * 6 5 4 32 32 H 1.09000 * 109.47199 * 60.00259 * 7 5 4 33 33 H 1.09007 * 109.47071 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47054 * 300.00009 * 7 5 4 35 35 H 1.08995 * 109.47368 * 59.99748 * 8 5 4 36 36 H 1.09006 * 109.46678 * 180.02562 * 8 5 4 37 37 H 1.09003 * 109.46754 * 299.99297 * 8 5 4 38 38 H 0.97002 * 119.99911 * 355.07093 * 18 17 15 39 39 H 1.08996 * 113.61553 * 203.74895 * 23 14 13 40 40 H 1.09000 * 113.61589 * 334.65535 * 23 14 13 41 41 H 1.08999 * 113.53695 * 270.80508 * 24 23 14 42 42 H 1.09004 * 113.74036 * 139.94944 * 24 23 14 43 43 H 1.09001 * 113.61695 * 220.08214 * 25 24 23 44 44 H 1.09007 * 113.69083 * 89.19982 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0975 0.0000 4 6 3.5085 0.9721 0.0005 5 6 4.4826 2.1219 0.0000 6 6 4.2616 2.9781 1.2487 7 6 5.9129 1.5786 0.0002 8 6 4.2623 2.9765 -1.2498 9 16 3.9515 -0.6787 0.0079 10 6 2.2526 -1.1464 0.0005 11 6 1.7326 -2.5161 0.0017 12 8 0.5322 -2.7108 0.0018 13 8 2.5853 -3.5611 0.0026 14 6 2.0011 -4.8887 -0.0637 15 6 1.1802 -5.2283 1.1536 16 1 0.1257 -5.4386 1.0523 17 6 1.7754 -5.2704 2.3966 18 7 3.0517 -4.9802 2.5247 19 14 0.7689 -5.7397 3.8986 20 1 1.6357 -5.7110 5.1040 21 1 -0.3472 -4.7748 4.0678 22 1 0.2182 -7.1069 3.7180 23 6 1.2827 -5.1800 -1.3920 24 6 2.6355 -5.6932 -1.9182 25 6 3.0060 -5.9851 -0.4546 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8901 -0.5135 29 1 4.4186 2.3692 2.1391 30 1 4.9660 3.8100 1.2481 31 1 3.2427 3.3651 1.2481 32 1 6.0701 0.9689 -0.8895 33 1 6.6175 2.4103 0.0004 34 1 6.0700 0.9696 0.8905 35 1 3.2434 3.3636 -1.2503 36 1 4.9673 3.8079 -1.2503 37 1 4.4198 2.3666 -2.1394 38 1 3.5909 -4.8064 1.7373 39 1 0.5212 -5.9560 -1.3155 40 1 0.9264 -4.2845 -1.9012 41 1 3.2472 -4.9163 -2.3769 42 1 2.5553 -6.5882 -2.5353 43 1 4.0388 -5.7389 -0.2081 44 1 2.7171 -6.9815 -0.1200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:42 Heat of formation + Delta-G solvation = -39.358904 kcal Electronic energy + Delta-G solvation = -26030.783946 eV Core-core repulsion = 22461.309742 eV Total energy + Delta-G solvation = -3569.474204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12913 -39.38194 -37.38839 -36.57395 -34.29208 -32.42948 -31.09896 -28.30975 -27.62941 -27.44317 -26.01413 -24.91475 -24.78126 -23.02930 -21.70668 -20.07374 -19.03912 -18.33851 -17.68604 -17.07791 -16.07916 -15.49272 -15.31663 -14.94014 -14.68542 -14.14901 -14.08998 -13.76993 -13.68950 -13.49129 -13.25525 -12.60887 -12.55948 -12.40108 -12.32218 -12.17084 -12.05333 -11.86417 -11.57567 -11.47267 -11.19449 -11.17615 -10.97044 -10.86978 -10.59706 -10.45308 -10.24266 -10.15033 -10.05332 -9.65979 -9.40564 -9.19490 -9.07453 -8.50620 -8.47886 -8.18940 -6.41822 -4.20519 0.48216 1.43435 1.92264 2.69664 3.39971 3.43099 3.60815 3.62229 3.72713 3.94003 4.48084 4.56170 4.69869 4.80904 5.15552 5.25222 5.26292 5.35799 5.42443 5.47443 5.51507 5.55581 5.65450 5.65904 5.68917 5.73426 5.85648 5.91657 5.92724 6.00740 6.06689 6.10304 6.14596 6.25599 6.27662 6.56043 6.63209 6.65224 6.81219 7.04130 7.27642 7.58737 7.82698 8.07307 8.37123 8.77065 8.90200 9.55735 10.95894 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.004250 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.131817 B = 6587.354108 C = 6886.444446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.137 3.863 3 N -0.475 5.475 4 C 0.045 3.955 5 C 0.011 3.989 6 C -0.134 4.134 7 C -0.157 4.157 8 C -0.133 4.133 9 S 0.211 5.789 10 C -0.275 4.275 11 C 0.544 3.456 12 O -0.483 6.483 13 O -0.349 6.349 14 C 0.212 3.788 15 C -0.593 4.593 16 H 0.060 0.940 17 C 0.032 3.968 18 N -0.890 5.890 19 Si 1.064 2.936 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.285 1.285 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.109 4.109 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.279 0.721 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 12.807 -6.624 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.001 4.001 3 N -0.190 5.190 4 C -0.230 4.230 5 C 0.007 3.993 6 C -0.193 4.193 7 C -0.215 4.215 8 C -0.192 4.192 9 S 0.471 5.529 10 C -0.398 4.398 11 C 0.386 3.614 12 O -0.372 6.372 13 O -0.266 6.266 14 C 0.179 3.821 15 C -0.630 4.630 16 H 0.078 0.922 17 C -0.176 4.176 18 N -0.525 5.525 19 Si 0.891 3.109 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.211 1.211 23 C -0.182 4.182 24 C -0.186 4.186 25 C -0.147 4.147 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.660 12.478 -4.978 14.578 hybrid contribution -1.110 0.091 -1.560 1.917 sum 4.550 12.569 -6.538 14.881 Atomic orbital electron populations 1.20606 0.86142 1.04040 1.03670 1.20878 0.98368 0.84655 0.96180 1.65887 1.04438 1.31224 1.17402 1.27416 0.94440 0.98929 1.02174 1.19247 0.91326 0.90690 0.98059 1.21842 1.02842 0.98976 0.95639 1.22055 0.94410 1.01954 1.03082 1.21833 1.02843 0.98968 0.95521 1.84056 1.05280 0.99373 1.64164 1.25324 0.96852 0.97432 1.20176 1.18919 0.85030 0.83383 0.74103 1.90752 1.15749 1.85552 1.45152 1.86494 1.41131 1.16686 1.82298 1.20922 0.91198 0.76067 0.93951 1.22025 0.96830 1.51551 0.92640 0.92180 1.25851 0.97387 0.93294 1.01056 1.70703 1.06616 1.40825 1.34374 0.83629 0.75107 0.76566 0.75566 1.20685 1.21303 1.21126 1.23362 0.96201 1.00471 0.98150 1.22991 0.98399 1.00065 0.97189 1.22961 0.99100 0.99005 0.93605 0.90212 0.91132 0.88294 0.92330 0.91644 0.91416 0.91677 0.90618 0.91526 0.91424 0.91656 0.92493 0.90955 0.89843 0.92858 0.91305 0.92498 0.92323 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.72 36.01 0.35 -1.07 16 2 C 0.14 2.53 6.83 -83.52 -0.57 1.96 16 3 N -0.47 -7.88 10.47 -7.48 -0.08 -7.96 16 4 C 0.04 0.66 5.77 -13.31 -0.08 0.58 16 5 C 0.01 0.11 0.99 -155.66 -0.15 -0.04 16 6 C -0.13 -1.33 8.45 37.16 0.31 -1.02 16 7 C -0.16 -1.42 7.53 37.16 0.28 -1.14 16 8 C -0.13 -1.25 8.45 37.16 0.31 -0.93 16 9 S 0.21 3.49 21.40 -107.50 -2.30 1.19 16 10 C -0.28 -5.61 6.52 -36.79 -0.24 -5.85 16 11 C 0.54 13.07 7.30 34.06 0.25 13.32 16 12 O -0.48 -12.28 12.48 -19.35 -0.24 -12.52 16 13 O -0.35 -8.75 8.99 -40.96 -0.37 -9.12 16 14 C 0.21 5.32 0.11 -90.96 -0.01 5.31 16 15 C -0.59 -16.61 7.36 -34.44 -0.25 -16.86 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.03 0.91 5.40 -17.82 -0.10 0.81 16 18 N -0.89 -26.17 13.51 55.43 0.75 -25.42 16 19 Si 1.06 25.35 29.90 -169.99 -5.08 20.26 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.14 -3.17 6.91 -25.82 -0.18 -3.35 16 24 C -0.15 -2.86 8.03 -25.83 -0.21 -3.07 16 25 C -0.11 -2.42 6.66 -25.93 -0.17 -2.60 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.79 6.06 -51.93 -0.31 1.47 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.64 7.91 -51.93 -0.41 0.23 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.28 8.15 5.76 -40.82 -0.24 7.91 16 39 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 40 H 0.05 1.18 7.32 -51.93 -0.38 0.80 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.30 7.77 -51.93 -0.40 0.90 16 44 H 0.09 1.99 8.09 -51.93 -0.42 1.57 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -31.85 370.41 -9.05 -40.90 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.85 Total: 1.03 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.45 Total: -13.95 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.67 Total: -33.37 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.61 Total: -21.64 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.30 Total: 1.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.85 -9.05 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.539 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds