Wall clock time and date at job start Tue Mar 31 2020 14:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30916 * 123.03342 * 2 1 4 4 C 1.29392 * 117.47107 * 179.97438 * 3 2 1 5 5 C 1.50697 * 124.71098 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47059 * 60.00375 * 5 4 3 7 7 C 1.52995 * 109.47316 * 180.02562 * 5 4 3 8 8 C 1.53007 * 109.47052 * 300.00766 * 5 4 3 9 9 S 1.70921 * 110.58379 * 359.75470 * 4 3 2 10 10 C 1.36755 * 123.04014 * 179.97438 * 2 1 3 11 11 C 1.46513 * 126.17145 * 359.97438 * 10 2 1 12 12 O 1.21611 * 119.99869 * 0.02562 * 11 10 2 13 13 O 1.34871 * 119.99601 * 180.02562 * 11 10 2 14 14 C 1.45200 * 116.99916 * 182.98617 * 13 11 10 15 15 C 1.50702 * 112.85093 * 294.88745 * 14 13 11 16 16 H 1.08001 * 119.99857 * 118.51904 * 15 14 13 17 17 C 1.37875 * 119.99794 * 298.52217 * 15 14 13 18 18 N 1.31515 * 120.00003 * 1.77297 * 17 15 14 19 19 Si 1.86794 * 119.99887 * 181.77364 * 17 15 14 20 20 H 1.48504 * 109.47217 * 179.97438 * 19 17 15 21 21 H 1.48506 * 109.47293 * 299.99728 * 19 17 15 22 22 H 1.48496 * 109.47370 * 59.99932 * 19 17 15 23 23 C 1.53789 * 113.61287 * 66.07989 * 14 13 11 24 24 C 1.53958 * 87.01490 * 89.23123 * 23 14 13 25 25 C 1.53774 * 87.11339 * 25.36081 * 24 23 14 26 26 H 1.09005 * 109.47089 * 270.02244 * 1 2 3 27 27 H 1.08998 * 109.47198 * 30.02031 * 1 2 3 28 28 H 1.08995 * 109.47013 * 150.02107 * 1 2 3 29 29 H 1.08998 * 109.46599 * 59.99837 * 6 5 4 30 30 H 1.08999 * 109.47029 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.46670 * 300.00334 * 6 5 4 32 32 H 1.09000 * 109.47199 * 60.00259 * 7 5 4 33 33 H 1.09007 * 109.47071 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47054 * 300.00009 * 7 5 4 35 35 H 1.08995 * 109.47368 * 59.99748 * 8 5 4 36 36 H 1.09006 * 109.46678 * 180.02562 * 8 5 4 37 37 H 1.09003 * 109.46754 * 299.99297 * 8 5 4 38 38 H 0.97002 * 119.99911 * 355.07093 * 18 17 15 39 39 H 1.08996 * 113.61553 * 203.74895 * 23 14 13 40 40 H 1.09000 * 113.61589 * 334.65535 * 23 14 13 41 41 H 1.08999 * 113.53695 * 270.80508 * 24 23 14 42 42 H 1.09004 * 113.74036 * 139.94944 * 24 23 14 43 43 H 1.09001 * 113.61695 * 220.08214 * 25 24 23 44 44 H 1.09007 * 113.69083 * 89.19982 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0975 0.0000 4 6 3.5085 0.9721 0.0005 5 6 4.4826 2.1219 0.0000 6 6 4.2616 2.9781 1.2487 7 6 5.9129 1.5786 0.0002 8 6 4.2623 2.9765 -1.2498 9 16 3.9515 -0.6787 0.0079 10 6 2.2526 -1.1464 0.0005 11 6 1.7326 -2.5161 0.0017 12 8 0.5322 -2.7108 0.0018 13 8 2.5853 -3.5611 0.0026 14 6 2.0011 -4.8887 -0.0637 15 6 1.1802 -5.2283 1.1536 16 1 0.1257 -5.4386 1.0523 17 6 1.7754 -5.2704 2.3966 18 7 3.0517 -4.9802 2.5247 19 14 0.7689 -5.7397 3.8986 20 1 1.6357 -5.7110 5.1040 21 1 -0.3472 -4.7748 4.0678 22 1 0.2182 -7.1069 3.7180 23 6 1.2827 -5.1800 -1.3920 24 6 2.6355 -5.6932 -1.9182 25 6 3.0060 -5.9851 -0.4546 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8901 -0.5135 29 1 4.4186 2.3692 2.1391 30 1 4.9660 3.8100 1.2481 31 1 3.2427 3.3651 1.2481 32 1 6.0701 0.9689 -0.8895 33 1 6.6175 2.4103 0.0004 34 1 6.0700 0.9696 0.8905 35 1 3.2434 3.3636 -1.2503 36 1 4.9673 3.8079 -1.2503 37 1 4.4198 2.3666 -2.1394 38 1 3.5909 -4.8064 1.7373 39 1 0.5212 -5.9560 -1.3155 40 1 0.9264 -4.2845 -1.9012 41 1 3.2472 -4.9163 -2.3769 42 1 2.5553 -6.5882 -2.5353 43 1 4.0388 -5.7389 -0.2081 44 1 2.7171 -6.9815 -0.1200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:42 Heat of formation + Delta-G solvation = -56.411313 kcal Electronic energy + Delta-G solvation = -26031.523394 eV Core-core repulsion = 22461.309742 eV Total energy + Delta-G solvation = -3570.213652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66803 -41.01057 -39.00044 -37.71797 -36.15468 -34.54787 -32.45221 -29.81899 -28.36859 -28.19624 -28.00574 -26.58528 -26.12573 -24.87820 -23.40413 -21.14335 -20.66951 -20.13015 -19.42142 -18.56453 -17.63362 -17.17271 -16.95741 -16.29427 -16.12005 -15.70501 -15.53094 -15.24935 -15.06722 -14.88401 -14.53851 -14.44992 -14.01363 -13.72975 -13.63885 -13.26392 -13.14355 -13.00087 -12.78148 -12.63076 -12.57854 -12.42946 -12.38157 -12.29871 -12.08868 -12.00122 -11.95889 -11.95703 -11.85198 -11.36429 -10.96919 -10.81255 -10.60844 -10.57536 -10.18558 -9.84685 -8.62998 -6.41926 -0.92819 0.08751 0.55963 1.25766 1.46648 1.51872 1.73230 1.88321 2.00191 2.50100 2.76465 3.15158 3.57200 3.69021 3.77894 3.84799 3.89986 3.90271 3.98834 4.15169 4.21971 4.48226 4.57202 4.60161 4.67111 4.69956 4.72314 4.77058 4.83583 4.85831 4.94234 4.94666 4.94895 5.01153 5.02884 5.15040 5.22336 5.32844 5.34566 5.37041 5.48164 5.67058 6.05242 6.16155 6.45522 6.57464 7.01575 7.40418 8.74618 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.004250 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.131817 B = 6587.354108 C = 6886.444446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.150 3.850 3 N -0.486 5.486 4 C 0.073 3.927 5 C 0.006 3.994 6 C -0.132 4.132 7 C -0.158 4.158 8 C -0.130 4.130 9 S 0.222 5.778 10 C -0.332 4.332 11 C 0.537 3.463 12 O -0.513 6.513 13 O -0.356 6.356 14 C 0.186 3.814 15 C -0.606 4.606 16 H 0.040 0.960 17 C -0.010 4.010 18 N -0.912 5.912 19 Si 1.102 2.898 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.107 4.107 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.270 0.730 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 14.610 -7.302 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.010 3.990 3 N -0.201 5.201 4 C -0.201 4.201 5 C 0.002 3.998 6 C -0.191 4.191 7 C -0.216 4.216 8 C -0.188 4.188 9 S 0.483 5.517 10 C -0.454 4.454 11 C 0.381 3.619 12 O -0.404 6.404 13 O -0.273 6.273 14 C 0.152 3.848 15 C -0.643 4.643 16 H 0.059 0.941 17 C -0.213 4.213 18 N -0.548 5.548 19 Si 0.924 3.076 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.180 4.180 24 C -0.159 4.159 25 C -0.145 4.145 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.036 14.264 -5.677 16.887 hybrid contribution -1.507 -0.287 -1.381 2.064 sum 5.529 13.977 -7.058 16.605 Atomic orbital electron populations 1.20605 0.85425 1.04465 1.03779 1.21206 0.99199 0.84638 0.93946 1.66024 1.05086 1.29991 1.18949 1.28414 0.94612 0.99248 0.97858 1.19632 0.91181 0.89511 0.99500 1.21865 1.03197 0.99582 0.94473 1.22115 0.93655 1.03085 1.02766 1.21846 1.03174 0.99530 0.94284 1.83916 1.02904 1.00512 1.64321 1.25127 0.99476 0.95989 1.24781 1.19451 0.84819 0.84427 0.73200 1.90713 1.16700 1.86241 1.46740 1.86456 1.41298 1.16951 1.82635 1.21194 0.92776 0.76632 0.94206 1.22225 0.96199 1.51579 0.94312 0.94148 1.27014 0.97696 0.92846 1.03736 1.70798 1.07242 1.42893 1.33911 0.83140 0.73998 0.77447 0.72972 1.20350 1.21318 1.18725 1.23315 0.97618 1.00269 0.96812 1.22857 0.95789 1.01517 0.95693 1.22907 0.97979 0.97764 0.95863 0.90118 0.88296 0.90146 0.93283 0.88334 0.92506 0.91638 0.87429 0.92276 0.92498 0.88454 0.92675 0.91932 0.89839 0.93641 0.90292 0.88958 0.92886 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 9.72 71.24 0.69 -2.13 16 2 C 0.15 5.56 6.83 42.35 0.29 5.85 16 3 N -0.49 -15.69 10.47 -177.57 -1.86 -17.55 16 4 C 0.07 2.04 5.77 88.47 0.51 2.55 16 5 C 0.01 0.11 0.99 -52.93 -0.05 0.06 16 6 C -0.13 -2.24 8.45 71.98 0.61 -1.63 16 7 C -0.16 -2.36 7.53 71.98 0.54 -1.82 16 8 C -0.13 -1.99 8.45 71.98 0.61 -1.38 16 9 S 0.22 7.31 21.40 -56.49 -1.21 6.10 16 10 C -0.33 -13.87 6.52 24.08 0.16 -13.72 16 11 C 0.54 26.87 7.30 69.98 0.51 27.38 16 12 O -0.51 -27.38 12.48 19.47 0.24 -27.13 16 13 O -0.36 -18.47 8.99 -57.85 -0.52 -18.99 16 14 C 0.19 9.55 0.11 -11.01 0.00 9.55 16 15 C -0.61 -35.00 7.36 25.60 0.19 -34.81 16 16 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 17 C -0.01 -0.59 5.40 84.65 0.46 -0.13 16 18 N -0.91 -54.89 13.51 21.45 0.29 -54.60 16 19 Si 1.10 51.87 29.90 68.60 2.05 53.92 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 C -0.14 -6.32 6.91 31.18 0.22 -6.11 16 24 C -0.12 -4.50 8.03 31.18 0.25 -4.25 16 25 C -0.11 -4.80 6.66 31.12 0.21 -4.59 16 26 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 27 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.08 3.03 6.06 -2.39 -0.01 3.02 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.06 0.99 7.91 -2.39 -0.02 0.97 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.27 16.27 5.76 -92.71 -0.53 15.74 16 39 H 0.08 3.63 8.09 -2.39 -0.02 3.61 16 40 H 0.04 2.05 7.32 -2.39 -0.02 2.03 16 41 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 43 H 0.05 2.39 7.77 -2.39 -0.02 2.37 16 44 H 0.09 3.85 8.09 -2.38 -0.02 3.83 16 Total: -1.00 -71.72 370.41 5.40 -66.32 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.22 Total: 17.11 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.18 Total: -25.17 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.57 Total: -72.15 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -0.28 Total: -46.13 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -1.21 Total: 6.10 kcal Total: -71.72 5.40 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.906 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds