Wall clock time and date at job start Tue Mar 31 2020 14:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38269 * 119.94233 * 2 1 4 4 C 1.38096 * 120.09701 * 180.02562 * 3 2 1 5 5 C 1.38914 * 119.97929 * 359.97438 * 4 3 2 6 6 N 1.39929 * 120.05332 * 179.97438 * 5 4 3 7 7 C 1.34768 * 120.00377 * 35.09174 * 6 5 4 8 8 O 1.21292 * 119.99996 * 355.38198 * 7 6 5 9 9 C 1.50698 * 120.00291 * 175.37874 * 7 6 5 10 10 H 1.08997 * 109.46973 * 305.00521 * 9 7 6 11 11 C 1.53007 * 109.46854 * 64.99935 * 9 7 6 12 12 O 1.45199 * 109.47348 * 184.99938 * 9 7 6 13 13 C 1.34229 * 116.99971 * 150.00427 * 12 9 7 14 14 O 1.20829 * 120.00001 * 359.97438 * 13 12 9 15 15 C 1.50699 * 119.99955 * 180.02562 * 13 12 9 16 16 C 1.53006 * 109.46869 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46869 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00460 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00125 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99504 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46973 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47024 * 119.99844 * 21 19 17 24 24 H 1.48495 * 109.47090 * 239.99785 * 21 19 17 25 25 C 1.38804 * 119.88701 * 0.25654 * 5 4 3 26 26 C 1.38358 * 119.90191 * 359.49032 * 25 5 4 27 27 F 1.35104 * 119.99280 * 180.23187 * 26 25 5 28 28 H 1.09002 * 109.47154 * 90.00010 * 1 2 3 29 29 H 1.09003 * 109.47323 * 209.99796 * 1 2 3 30 30 H 1.09001 * 109.47297 * 329.99785 * 1 2 3 31 31 H 1.08005 * 119.95044 * 359.97438 * 3 2 1 32 32 H 1.08008 * 120.01364 * 179.97438 * 4 3 2 33 33 H 0.97003 * 119.99480 * 215.08678 * 6 5 4 34 34 H 1.09007 * 109.46393 * 60.00243 * 11 9 7 35 35 H 1.08999 * 109.47258 * 300.00703 * 11 9 7 36 36 H 1.08995 * 109.47172 * 179.97438 * 11 9 7 37 37 H 1.08994 * 109.46968 * 299.99340 * 15 13 12 38 38 H 1.09000 * 109.46829 * 60.00262 * 15 13 12 39 39 H 1.09003 * 109.47208 * 299.99715 * 16 15 13 40 40 H 1.09001 * 109.47338 * 60.00201 * 16 15 13 41 41 H 0.97002 * 119.99293 * 179.97438 * 20 19 17 42 42 H 1.07992 * 120.04947 * 179.75049 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2754 0.0005 -0.0005 6 7 5.6747 0.0024 -0.0016 7 6 6.3478 0.9586 0.6684 8 8 5.7435 1.8648 1.2022 9 6 7.8512 0.9020 0.7545 10 1 8.1558 -0.0617 1.1625 11 6 8.4490 1.0759 -0.6432 12 8 8.3269 1.9663 1.6201 13 6 9.4619 1.7380 2.2994 14 8 10.0385 0.6835 2.1752 15 6 10.0162 2.7963 3.2179 16 6 11.3056 2.2859 3.8645 17 6 11.8603 3.3445 4.7825 18 1 11.3451 4.2872 4.8933 19 6 13.0262 3.1100 5.4802 20 7 13.6539 1.9622 5.3449 21 14 13.7142 4.4224 6.6175 22 1 12.8275 5.6134 6.5925 23 1 13.7883 3.8888 8.0014 24 1 15.0739 4.8085 6.1624 25 6 3.5818 -1.2019 -0.0054 26 6 2.1983 -1.2000 0.0005 27 9 1.5213 -2.3693 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6553 2.1325 -0.0004 32 1 4.1158 2.1386 -0.0010 33 1 6.1602 -0.6846 -0.4846 34 1 8.1444 2.0397 -1.0513 35 1 8.0918 0.2770 -1.2931 36 1 9.5364 1.0354 -0.5810 37 1 10.2292 3.6989 2.6453 38 1 9.2855 3.0224 3.9944 39 1 11.0922 1.3833 4.4372 40 1 12.0365 2.0594 3.0882 41 1 14.4743 1.7974 5.8354 42 1 4.1213 -2.1374 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:47 Heat of formation + Delta-G solvation = -152.916766 kcal Electronic energy + Delta-G solvation = -25930.233901 eV Core-core repulsion = 21789.622282 eV Total energy + Delta-G solvation = -4140.611618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.25042 -41.13732 -40.08197 -38.75642 -36.33825 -35.44971 -33.63905 -32.84132 -31.55964 -30.97666 -30.86033 -27.01472 -26.24523 -24.78410 -23.46676 -22.72148 -21.79876 -20.60823 -19.90822 -18.72574 -17.87175 -17.46408 -16.67688 -16.41743 -16.23052 -16.03662 -15.96652 -15.74846 -15.26723 -15.05663 -14.48664 -14.20281 -14.07864 -13.78180 -13.74126 -13.45400 -13.13781 -12.97063 -12.67380 -12.44676 -12.37162 -12.24875 -12.14972 -11.71492 -11.65219 -11.25155 -10.99662 -10.77805 -10.63719 -10.59651 -10.09582 -10.07019 -9.97496 -9.61657 -9.21744 -9.19283 -8.48690 -8.40422 -6.04242 -4.08899 0.68706 0.81965 2.07663 2.19993 2.68729 3.15217 3.21390 3.29753 3.37355 3.41389 3.91746 4.12826 4.34485 4.41241 4.42583 4.60060 4.69873 4.75427 4.82813 5.01688 5.04186 5.20437 5.20940 5.31564 5.40773 5.48774 5.51467 5.59931 5.71249 5.81283 5.82561 5.98944 6.05042 6.08386 6.15918 6.49535 6.56166 6.80971 6.86314 7.63235 7.65563 7.68944 7.94735 8.14804 8.33420 8.98223 9.55424 11.06798 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.001958 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.446483 B =14298.290226 C =14565.828953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C -0.073 4.073 4 C -0.126 4.126 5 C 0.173 3.827 6 N -0.672 5.672 7 C 0.521 3.479 8 O -0.490 6.490 9 C 0.068 3.932 10 H 0.113 0.887 11 C -0.165 4.165 12 O -0.337 6.337 13 C 0.459 3.541 14 O -0.503 6.503 15 C -0.102 4.102 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.178 4.178 26 C 0.115 3.885 27 F -0.136 7.136 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.714 -5.506 -16.356 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.092 4.092 4 C -0.146 4.146 5 C 0.078 3.922 6 N -0.319 5.319 7 C 0.307 3.693 8 O -0.362 6.362 9 C 0.009 3.991 10 H 0.131 0.869 11 C -0.223 4.223 12 O -0.254 6.254 13 C 0.303 3.697 14 O -0.389 6.389 15 C -0.139 4.139 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.199 4.199 26 C 0.095 3.905 27 F -0.115 7.115 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.766 -5.298 -15.917 29.090 hybrid contribution 0.702 -0.226 0.375 0.827 sum -23.064 -5.524 -15.543 28.355 Atomic orbital electron populations 1.20705 0.90043 1.03394 1.02733 1.19965 0.97209 0.91862 1.04670 1.20857 0.93447 0.97212 0.97648 1.21417 0.94149 0.98240 1.00839 1.17368 0.82408 0.93230 0.99180 1.43380 1.04458 1.31593 1.52477 1.20528 0.89480 0.81594 0.77653 1.90750 1.69330 1.32677 1.43394 1.22226 0.89713 0.94205 0.92938 0.86915 1.22170 1.03326 1.03571 0.93218 1.86744 1.41754 1.42378 1.54493 1.25003 0.77057 0.89594 0.78073 1.90630 1.58376 1.27263 1.62666 1.21814 1.00976 0.95197 0.95951 1.19040 0.88772 0.96927 0.95664 1.21193 1.08462 1.01238 1.25725 0.92173 1.25026 0.96812 0.95609 0.96926 1.70005 1.17790 1.22980 1.42035 0.86474 0.78913 0.81731 0.80506 1.19609 1.20958 1.20965 1.20772 0.92714 0.98303 1.08106 1.17125 0.89164 0.81033 1.03198 1.91492 1.80045 1.46039 1.93885 0.90867 0.91253 0.90873 0.84486 0.83439 0.74876 0.90713 0.90514 0.89886 0.88670 0.88654 0.95554 0.95525 0.92893 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.83 36.00 0.35 -0.34 16 2 C -0.14 -1.14 5.89 -104.52 -0.62 -1.75 16 3 C -0.07 -0.61 9.69 -39.62 -0.38 -1.00 16 4 C -0.13 -1.27 8.70 -39.38 -0.34 -1.62 16 5 C 0.17 1.66 6.30 -83.70 -0.53 1.13 16 6 N -0.67 -5.82 5.30 -9.87 -0.05 -5.87 16 7 C 0.52 6.31 7.03 -10.99 -0.08 6.23 16 8 O -0.49 -7.66 13.95 -14.06 -0.20 -7.86 16 9 C 0.07 0.86 2.98 -27.88 -0.08 0.77 16 10 H 0.11 1.38 7.16 -51.93 -0.37 1.01 16 11 C -0.17 -1.57 9.49 37.16 0.35 -1.22 16 12 O -0.34 -5.59 9.42 -45.89 -0.43 -6.02 16 13 C 0.46 8.78 7.93 36.01 0.29 9.07 16 14 O -0.50 -10.72 15.20 -18.75 -0.29 -11.00 16 15 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 16 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 17 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.18 -1.54 9.94 -39.33 -0.39 -1.93 16 26 C 0.11 1.06 7.24 -39.44 -0.29 0.77 16 27 F -0.14 -1.31 16.47 2.25 0.04 -1.28 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.44 7.63 -51.93 -0.40 0.04 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.15 1.65 6.22 -52.48 -0.33 1.33 16 33 H 0.41 2.16 8.45 -40.82 -0.34 1.82 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.46 7.78 -51.93 -0.40 0.05 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -34.34 368.47 -7.67 -42.01 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.61 Total: -1.07 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.40 Total: -4.79 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.68 Total: -31.91 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.91 Total: -24.88 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.34 -7.67 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.903 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds