Wall clock time and date at job start Tue Mar 31 2020 14:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38269 * 119.94233 * 2 1 4 4 C 1.38096 * 120.09701 * 180.02562 * 3 2 1 5 5 C 1.38914 * 119.97929 * 359.97438 * 4 3 2 6 6 N 1.39929 * 120.05332 * 179.97438 * 5 4 3 7 7 C 1.34768 * 120.00377 * 35.09174 * 6 5 4 8 8 O 1.21292 * 119.99996 * 355.38198 * 7 6 5 9 9 C 1.50698 * 120.00291 * 175.37874 * 7 6 5 10 10 H 1.08997 * 109.46973 * 305.00521 * 9 7 6 11 11 C 1.53007 * 109.46854 * 64.99935 * 9 7 6 12 12 O 1.45199 * 109.47348 * 184.99938 * 9 7 6 13 13 C 1.34229 * 116.99971 * 150.00427 * 12 9 7 14 14 O 1.20829 * 120.00001 * 359.97438 * 13 12 9 15 15 C 1.50699 * 119.99955 * 180.02562 * 13 12 9 16 16 C 1.53006 * 109.46869 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46869 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00460 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00125 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99504 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46973 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47024 * 119.99844 * 21 19 17 24 24 H 1.48495 * 109.47090 * 239.99785 * 21 19 17 25 25 C 1.38804 * 119.88701 * 0.25654 * 5 4 3 26 26 C 1.38358 * 119.90191 * 359.49032 * 25 5 4 27 27 F 1.35104 * 119.99280 * 180.23187 * 26 25 5 28 28 H 1.09002 * 109.47154 * 90.00010 * 1 2 3 29 29 H 1.09003 * 109.47323 * 209.99796 * 1 2 3 30 30 H 1.09001 * 109.47297 * 329.99785 * 1 2 3 31 31 H 1.08005 * 119.95044 * 359.97438 * 3 2 1 32 32 H 1.08008 * 120.01364 * 179.97438 * 4 3 2 33 33 H 0.97003 * 119.99480 * 215.08678 * 6 5 4 34 34 H 1.09007 * 109.46393 * 60.00243 * 11 9 7 35 35 H 1.08999 * 109.47258 * 300.00703 * 11 9 7 36 36 H 1.08995 * 109.47172 * 179.97438 * 11 9 7 37 37 H 1.08994 * 109.46968 * 299.99340 * 15 13 12 38 38 H 1.09000 * 109.46829 * 60.00262 * 15 13 12 39 39 H 1.09003 * 109.47208 * 299.99715 * 16 15 13 40 40 H 1.09001 * 109.47338 * 60.00201 * 16 15 13 41 41 H 0.97002 * 119.99293 * 179.97438 * 20 19 17 42 42 H 1.07992 * 120.04947 * 179.75049 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2754 0.0005 -0.0005 6 7 5.6747 0.0024 -0.0016 7 6 6.3478 0.9586 0.6684 8 8 5.7435 1.8648 1.2022 9 6 7.8512 0.9020 0.7545 10 1 8.1558 -0.0617 1.1625 11 6 8.4490 1.0759 -0.6432 12 8 8.3269 1.9663 1.6201 13 6 9.4619 1.7380 2.2994 14 8 10.0385 0.6835 2.1752 15 6 10.0162 2.7963 3.2179 16 6 11.3056 2.2859 3.8645 17 6 11.8603 3.3445 4.7825 18 1 11.3451 4.2872 4.8933 19 6 13.0262 3.1100 5.4802 20 7 13.6539 1.9622 5.3449 21 14 13.7142 4.4224 6.6175 22 1 12.8275 5.6134 6.5925 23 1 13.7883 3.8888 8.0014 24 1 15.0739 4.8085 6.1624 25 6 3.5818 -1.2019 -0.0054 26 6 2.1983 -1.2000 0.0005 27 9 1.5213 -2.3693 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6553 2.1325 -0.0004 32 1 4.1158 2.1386 -0.0010 33 1 6.1602 -0.6846 -0.4846 34 1 8.1444 2.0397 -1.0513 35 1 8.0918 0.2770 -1.2931 36 1 9.5364 1.0354 -0.5810 37 1 10.2292 3.6989 2.6453 38 1 9.2855 3.0224 3.9944 39 1 11.0922 1.3833 4.4372 40 1 12.0365 2.0594 3.0882 41 1 14.4743 1.7974 5.8354 42 1 4.1213 -2.1374 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:46 Heat of formation + Delta-G solvation = -172.561310 kcal Electronic energy + Delta-G solvation = -25931.085752 eV Core-core repulsion = 21789.622282 eV Total energy + Delta-G solvation = -4141.463470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.96418 -42.16578 -41.32040 -39.62405 -37.72551 -36.29853 -35.66149 -33.81888 -33.06073 -32.09562 -31.58843 -28.12731 -27.68271 -25.84168 -24.28835 -24.11103 -22.84774 -21.63642 -21.35402 -19.56040 -19.25554 -18.59198 -18.22143 -17.45590 -17.42667 -17.00740 -16.88725 -16.66051 -16.48831 -16.29878 -16.02096 -15.35701 -15.00898 -14.69546 -14.43498 -14.31033 -14.30445 -14.28041 -13.90688 -13.56285 -13.42750 -13.26334 -13.10730 -12.88937 -12.85293 -12.61256 -12.49541 -12.28340 -12.05673 -11.97522 -11.76126 -11.51287 -11.36322 -11.27499 -10.96565 -10.58704 -9.91018 -9.20415 -8.20806 -6.33908 -0.02772 0.12454 1.02694 1.19485 1.26087 1.43828 1.44038 1.57860 2.04558 2.43156 2.52395 3.13241 3.17542 3.31762 3.65896 3.71454 3.78550 3.82938 3.86747 4.02575 4.19885 4.32093 4.38308 4.42678 4.57683 4.59277 4.64415 4.77155 4.87488 4.91534 5.00488 5.01934 5.03991 5.20277 5.24704 5.29776 5.37186 5.46677 5.54886 5.80116 5.86376 6.11148 6.13480 6.69906 6.80995 6.84671 7.36135 8.91850 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.001958 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.446483 B =14298.290226 C =14565.828953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.135 4.135 3 C -0.074 4.074 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.651 5.651 7 C 0.527 3.473 8 O -0.530 6.530 9 C 0.061 3.939 10 H 0.117 0.883 11 C -0.160 4.160 12 O -0.340 6.340 13 C 0.470 3.530 14 O -0.532 6.532 15 C -0.096 4.096 16 C 0.040 3.960 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.256 1.256 23 H -0.281 1.281 24 H -0.279 1.279 25 C -0.172 4.172 26 C 0.099 3.901 27 F -0.140 7.140 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.134 0.866 33 H 0.432 0.568 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.111 0.889 39 H -0.009 1.009 40 H -0.005 1.005 41 H 0.264 0.736 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.183 -4.759 -17.004 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 C -0.092 4.092 4 C -0.160 4.160 5 C 0.062 3.938 6 N -0.299 5.299 7 C 0.314 3.686 8 O -0.405 6.405 9 C 0.002 3.998 10 H 0.134 0.866 11 C -0.218 4.218 12 O -0.256 6.256 13 C 0.315 3.685 14 O -0.421 6.421 15 C -0.133 4.133 16 C 0.003 3.997 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.179 1.179 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.193 4.193 26 C 0.079 3.921 27 F -0.119 7.119 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.151 0.849 33 H 0.272 0.728 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.010 0.990 40 H 0.014 0.986 41 H 0.073 0.927 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.270 -4.572 -16.610 30.583 hybrid contribution 1.033 -0.535 0.490 1.262 sum -24.237 -5.108 -16.120 29.553 Atomic orbital electron populations 1.20779 0.88435 1.03992 1.03705 1.20263 0.98491 0.91503 1.03376 1.21079 0.92923 0.98209 0.97030 1.21459 0.95018 0.97950 1.01555 1.17449 0.82493 0.93512 1.00329 1.43115 1.04352 1.30963 1.51502 1.20390 0.89076 0.81665 0.77497 1.90741 1.69854 1.34466 1.45449 1.22626 0.90304 0.93050 0.93795 0.86558 1.22209 1.02304 1.05431 0.91826 1.86664 1.40296 1.43914 1.54754 1.24525 0.77487 0.88627 0.77895 1.90619 1.59461 1.28247 1.63727 1.21544 0.98769 0.96067 0.96906 1.18802 0.90836 0.95568 0.94529 1.21670 1.08762 1.02021 1.25761 0.90664 1.26068 0.97309 0.97976 0.98757 1.70156 1.18434 1.25378 1.43395 0.85280 0.78243 0.78939 0.77841 1.17910 1.20648 1.20485 1.20911 0.92699 0.98687 1.07030 1.17341 0.89562 0.81252 1.03960 1.91482 1.80118 1.46257 1.93999 0.89627 0.91484 0.89469 0.82425 0.84851 0.72794 0.90404 0.86430 0.91242 0.86490 0.87106 0.99007 0.98614 0.92724 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.83 71.23 0.70 -0.46 16 2 C -0.13 -2.05 5.89 -19.80 -0.12 -2.17 16 3 C -0.07 -1.14 9.69 22.24 0.22 -0.93 16 4 C -0.14 -2.72 8.70 22.40 0.19 -2.52 16 5 C 0.16 2.81 6.30 38.15 0.24 3.05 16 6 N -0.65 -10.29 5.30 -303.53 -1.61 -11.89 16 7 C 0.53 12.30 7.03 87.66 0.62 12.92 16 8 O -0.53 -16.52 13.95 15.68 0.22 -16.30 16 9 C 0.06 1.47 2.98 29.85 0.09 1.56 16 10 H 0.12 2.77 7.16 -2.39 -0.02 2.75 16 11 C -0.16 -2.79 9.49 71.98 0.68 -2.11 16 12 O -0.34 -11.16 9.42 -45.07 -0.42 -11.58 16 13 C 0.47 18.10 7.93 71.24 0.56 18.67 16 14 O -0.53 -23.18 15.20 21.96 0.33 -22.85 16 15 C -0.10 -3.88 5.75 29.85 0.17 -3.71 16 16 C 0.04 2.14 4.26 29.85 0.13 2.26 16 17 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 19 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 20 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 21 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 C -0.17 -2.72 9.94 22.43 0.22 -2.49 16 26 C 0.10 1.69 7.24 22.36 0.16 1.85 16 27 F -0.14 -2.52 16.47 44.97 0.74 -1.78 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.74 7.63 -2.39 -0.02 0.72 16 30 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.13 3.00 6.22 -2.91 -0.02 2.98 16 33 H 0.43 3.49 8.45 -92.71 -0.78 2.71 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.12 1.05 7.78 -2.39 -0.02 1.03 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 38 H 0.11 4.15 8.14 -2.39 -0.02 4.14 16 39 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 40 H 0.00 -0.27 8.10 -2.39 -0.02 -0.29 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -76.07 368.47 6.41 -69.66 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.27 Total: 10.15 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.57 Total: -3.96 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.32 Total: -69.12 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: 0.13 Total: -50.73 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.74 Total: -1.78 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -76.07 6.41 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.902 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds