Wall clock time and date at job start Tue Mar 31 2020 14:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38261 * 119.94434 * 2 1 4 4 C 1.38102 * 120.09575 * 179.97438 * 3 2 1 5 5 C 1.38900 * 119.98038 * 0.02562 * 4 3 2 6 6 N 1.39923 * 120.05702 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00225 * 33.30475 * 6 5 4 8 8 O 1.21285 * 119.99615 * 5.27055 * 7 6 5 9 9 C 1.50697 * 120.00052 * 185.27080 * 7 6 5 10 10 H 1.09005 * 109.47189 * 55.00149 * 9 7 6 11 11 C 1.53002 * 109.47191 * 294.99920 * 9 7 6 12 12 O 1.45199 * 109.47213 * 174.99458 * 9 7 6 13 13 C 1.34224 * 117.00274 * 209.99673 * 12 9 7 14 14 O 1.20829 * 120.00151 * 0.02562 * 13 12 9 15 15 C 1.50704 * 120.00021 * 179.97438 * 13 12 9 16 16 C 1.53001 * 109.46807 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46616 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99951 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00029 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99701 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00279 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46934 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47655 * 119.99775 * 21 19 17 24 24 H 1.48498 * 109.47102 * 240.00098 * 21 19 17 25 25 C 1.38811 * 119.88679 * 359.74116 * 5 4 3 26 26 C 1.38357 * 119.90291 * 0.49232 * 25 5 4 27 27 F 1.35099 * 119.99116 * 179.78710 * 26 25 5 28 28 H 1.08996 * 109.47220 * 270.02546 * 1 2 3 29 29 H 1.09006 * 109.46977 * 30.02165 * 1 2 3 30 30 H 1.08997 * 109.46946 * 150.02159 * 1 2 3 31 31 H 1.07996 * 119.95435 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00721 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99957 * 213.30177 * 6 5 4 34 34 H 1.09003 * 109.47105 * 60.00200 * 11 9 7 35 35 H 1.09001 * 109.47279 * 180.02562 * 11 9 7 36 36 H 1.08998 * 109.46912 * 300.00125 * 11 9 7 37 37 H 1.08998 * 109.47032 * 300.00667 * 15 13 12 38 38 H 1.08998 * 109.46617 * 60.00746 * 15 13 12 39 39 H 1.09003 * 109.47066 * 299.99663 * 16 15 13 40 40 H 1.08998 * 109.47334 * 60.00681 * 16 15 13 41 41 H 0.96997 * 119.99843 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.05185 * 180.27137 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5782 1.2017 0.0005 5 6 4.2754 0.0004 0.0005 6 7 5.6747 0.0022 0.0016 7 6 6.3468 0.9783 0.6435 8 8 5.7427 1.8002 1.2995 9 6 7.8490 1.0484 0.5460 10 1 8.1439 1.0811 -0.5029 11 6 8.4614 -0.1866 1.2097 12 8 8.3225 2.2446 1.2191 13 6 9.4493 2.8026 0.7496 14 8 10.0211 2.3081 -0.1930 15 6 10.0009 4.0465 1.3975 16 6 11.2808 4.4727 0.6756 17 6 11.8327 5.7162 1.3238 18 1 11.3219 6.1580 2.1666 19 6 12.9897 6.2899 0.8410 20 7 13.6120 5.7516 -0.1850 21 14 13.6742 7.8309 1.6449 22 1 12.7948 8.2337 2.7716 23 1 15.0410 7.5569 2.1567 24 1 13.7306 8.9274 0.6451 25 6 3.5818 -1.2020 0.0054 26 6 2.1982 -1.2001 0.0000 27 9 1.5213 -2.3693 0.0004 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6555 2.1324 -0.0004 32 1 4.1158 2.1384 0.0010 33 1 6.1609 -0.6991 -0.4595 34 1 8.1060 -1.0846 0.7043 35 1 9.5479 -0.1357 1.1396 36 1 8.1665 -0.2192 2.2586 37 1 9.2640 4.8470 1.3330 38 1 10.2248 3.8420 2.4444 39 1 12.0179 3.6722 0.7398 40 1 11.0566 4.6772 -0.3713 41 1 14.4258 6.1554 -0.5249 42 1 4.1212 -2.1376 0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:49 Heat of formation + Delta-G solvation = -173.079627 kcal Electronic energy + Delta-G solvation = -25929.657664 eV Core-core repulsion = 21788.171718 eV Total energy + Delta-G solvation = -4141.485946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.96130 -42.16833 -41.32080 -39.63307 -37.72574 -36.30604 -35.66028 -33.81985 -33.06000 -32.10063 -31.59739 -28.12610 -27.67840 -25.85686 -24.32174 -24.09430 -22.84282 -21.62441 -21.37388 -19.56364 -19.25344 -18.59141 -18.22175 -17.53848 -17.32408 -16.97682 -16.89212 -16.68486 -16.49024 -16.22992 -16.09445 -15.36620 -15.02683 -14.69479 -14.44895 -14.37228 -14.28612 -14.19511 -13.92092 -13.59033 -13.41334 -13.25531 -13.15767 -12.88167 -12.81399 -12.65776 -12.49474 -12.28292 -12.05090 -11.96855 -11.75985 -11.50955 -11.39711 -11.27753 -10.99249 -10.58576 -9.92008 -9.19316 -8.20643 -6.33725 -0.04157 0.11940 1.06375 1.18417 1.24244 1.43939 1.44128 1.57918 2.04398 2.43249 2.52138 3.13411 3.17158 3.31693 3.66017 3.69761 3.78290 3.82675 3.86739 4.00076 4.18969 4.31483 4.38352 4.42756 4.57226 4.58697 4.64481 4.76628 4.87418 4.90559 4.99138 5.01252 5.02694 5.19598 5.24114 5.29111 5.36418 5.46877 5.55138 5.80295 5.85163 6.10878 6.13565 6.70018 6.80759 6.84804 7.36315 8.92007 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.001954 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.635275 B =14326.041698 C =14915.372881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.136 4.136 3 C -0.073 4.073 4 C -0.144 4.144 5 C 0.160 3.840 6 N -0.651 5.651 7 C 0.527 3.473 8 O -0.530 6.530 9 C 0.061 3.939 10 H 0.119 0.881 11 C -0.161 4.161 12 O -0.340 6.340 13 C 0.470 3.530 14 O -0.531 6.531 15 C -0.096 4.096 16 C 0.040 3.960 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.169 4.169 26 C 0.101 3.899 27 F -0.138 7.138 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.124 0.876 33 H 0.432 0.568 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.116 0.884 39 H -0.005 1.005 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.064 -16.888 0.368 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.091 4.091 4 C -0.164 4.164 5 C 0.066 3.934 6 N -0.300 5.300 7 C 0.314 3.686 8 O -0.405 6.405 9 C 0.002 3.998 10 H 0.136 0.864 11 C -0.218 4.218 12 O -0.257 6.257 13 C 0.315 3.685 14 O -0.420 6.420 15 C -0.133 4.133 16 C 0.003 3.997 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.573 5.573 21 Si 0.797 3.203 22 H -0.179 1.179 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.190 4.190 26 C 0.082 3.918 27 F -0.117 7.117 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.273 0.727 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.073 0.927 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -25.151 -16.484 0.445 30.075 hybrid contribution 1.034 0.116 -0.330 1.091 sum -24.118 -16.368 0.115 29.148 Atomic orbital electron populations 1.20777 0.88415 1.04174 1.03531 1.20242 0.98491 0.91481 1.03499 1.21027 0.92776 0.98295 0.97030 1.21313 0.95170 0.97716 1.02224 1.17420 0.82526 0.93529 0.99953 1.43155 1.04330 1.29069 1.53431 1.20398 0.89074 0.80913 0.78260 1.90759 1.70018 1.40121 1.39604 1.22631 0.90312 0.86043 1.00786 0.86363 1.22214 1.02234 0.94905 1.02496 1.86667 1.40924 1.40936 1.57150 1.24521 0.77388 0.85330 0.81275 1.90620 1.59296 1.63407 1.28691 1.21545 0.98888 0.91082 1.01782 1.18801 0.90890 0.95431 0.94604 1.21669 1.09395 1.10908 1.16246 0.90686 1.26060 0.97263 1.01232 0.95521 1.70148 1.18975 1.42062 1.26162 0.85284 0.78225 0.78222 0.78598 1.17936 1.20507 1.20625 1.20897 0.92591 0.98614 1.06935 1.17321 0.89593 0.81190 1.03732 1.91484 1.80111 1.46144 1.93966 0.90116 0.89353 0.91111 0.82642 0.85780 0.72749 0.86337 0.91206 0.90617 0.87046 0.86583 0.98643 0.98934 0.92718 0.81931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.83 71.24 0.70 -0.46 16 2 C -0.14 -2.06 5.89 -19.80 -0.12 -2.18 16 3 C -0.07 -1.17 9.69 22.24 0.22 -0.96 16 4 C -0.14 -2.94 8.65 22.40 0.19 -2.74 16 5 C 0.16 2.87 6.28 38.15 0.24 3.11 16 6 N -0.65 -10.30 5.30 -303.53 -1.61 -11.91 16 7 C 0.53 12.36 6.92 87.66 0.61 12.97 16 8 O -0.53 -16.74 14.20 15.70 0.22 -16.52 16 9 C 0.06 1.47 2.98 29.85 0.09 1.56 16 10 H 0.12 2.78 7.16 -2.38 -0.02 2.77 16 11 C -0.16 -2.85 9.49 71.98 0.68 -2.17 16 12 O -0.34 -11.17 9.42 -45.02 -0.42 -11.60 16 13 C 0.47 18.04 7.93 71.24 0.56 18.60 16 14 O -0.53 -23.05 15.20 21.95 0.33 -22.72 16 15 C -0.10 -3.87 5.75 29.85 0.17 -3.70 16 16 C 0.04 2.14 4.26 29.85 0.13 2.26 16 17 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 18 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 20 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 21 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 C -0.17 -2.51 9.94 22.44 0.22 -2.29 16 26 C 0.10 1.66 7.24 22.36 0.16 1.83 16 27 F -0.14 -2.35 16.47 44.97 0.74 -1.61 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.64 8.08 -2.38 -0.02 0.62 16 30 H 0.07 0.72 7.63 -2.39 -0.02 0.70 16 31 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.12 3.01 6.41 -2.91 -0.02 2.99 16 33 H 0.43 3.44 8.42 -92.71 -0.78 2.66 16 34 H 0.12 1.06 7.76 -2.39 -0.02 1.04 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 38 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 39 H 0.00 -0.29 8.10 -2.39 -0.02 -0.31 16 40 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -76.02 368.70 6.40 -69.61 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.27 Total: 10.08 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 4.56 Total: -3.96 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -1.33 Total: -68.99 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: 0.13 Total: -50.83 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.74 Total: -1.61 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -76.02 6.40 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.466 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds