Wall clock time and date at job start Tue Mar 31 2020 14:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38144 * 120.01026 * 2 1 4 4 C 1.38223 * 120.09443 * 179.97438 * 3 2 1 5 5 C 1.38534 * 120.11596 * 359.97438 * 4 3 2 6 6 F 1.35092 * 119.98888 * 180.02562 * 5 4 3 7 7 C 1.38311 * 120.01584 * 359.78700 * 5 4 3 8 8 C 1.38854 * 119.90797 * 0.46437 * 7 5 4 9 9 N 1.39922 * 120.05545 * 179.78712 * 8 7 5 10 10 C 1.34772 * 120.00610 * 335.16093 * 9 8 7 11 11 O 1.21289 * 119.99855 * 354.48099 * 10 9 8 12 12 C 1.50697 * 120.00255 * 174.47965 * 10 9 8 13 13 H 1.08993 * 109.47467 * 304.99807 * 12 10 9 14 14 C 1.53000 * 109.46983 * 65.00156 * 12 10 9 15 15 O 1.45197 * 109.46963 * 184.99857 * 12 10 9 16 16 C 1.34234 * 117.00083 * 150.00326 * 15 12 10 17 17 O 1.20823 * 119.99742 * 359.97438 * 16 15 12 18 18 C 1.50694 * 120.00097 * 180.02562 * 16 15 12 19 19 C 1.53002 * 109.46974 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47097 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99943 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00018 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00022 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00073 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46859 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47067 * 120.00097 * 24 22 20 27 27 H 1.48490 * 109.47172 * 240.00150 * 24 22 20 28 28 H 1.09002 * 109.47183 * 270.02746 * 1 2 3 29 29 H 1.08997 * 109.46966 * 30.02090 * 1 2 3 30 30 H 1.09002 * 109.46968 * 150.02596 * 1 2 3 31 31 H 1.08003 * 119.95084 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.93920 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.04531 * 180.25287 * 7 5 4 34 34 H 0.97003 * 119.99185 * 155.15910 * 9 8 7 35 35 H 1.09003 * 109.47072 * 299.99784 * 14 12 10 36 36 H 1.09003 * 109.47020 * 180.02562 * 14 12 10 37 37 H 1.08993 * 109.47304 * 59.99552 * 14 12 10 38 38 H 1.09002 * 109.47427 * 299.99546 * 18 16 15 39 39 H 1.08997 * 109.47486 * 59.99852 * 18 16 15 40 40 H 1.08998 * 109.47702 * 300.00019 * 19 18 16 41 41 H 1.09005 * 109.47112 * 59.99856 * 19 18 16 42 42 H 0.97002 * 120.00518 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1962 0.0000 4 6 3.5802 1.1983 0.0005 5 6 4.2771 0.0010 0.0016 6 9 5.6280 0.0059 0.0027 7 6 3.5901 -1.1994 0.0066 8 6 2.2015 -1.2025 0.0008 9 7 1.5034 -2.4151 0.0013 10 6 2.0870 -3.5290 -0.4833 11 8 3.1771 -3.4621 -1.0109 12 6 1.3853 -4.8578 -0.3698 13 1 1.1316 -5.0468 0.6732 14 6 0.1064 -4.8325 -1.2092 15 8 2.2608 -5.9104 -0.8533 16 6 2.1168 -7.1249 -0.3003 17 8 1.2869 -7.3025 0.5597 18 6 2.9908 -8.2667 -0.7512 19 6 2.6252 -9.5290 0.0322 20 6 3.4989 -10.6710 -0.4191 21 1 4.2410 -10.5122 -1.1875 22 6 3.3515 -11.9184 0.1496 23 7 2.4482 -12.1117 1.0857 24 14 4.4350 -13.3337 -0.4093 25 1 5.3642 -12.8585 -1.4658 26 1 5.2178 -13.8436 0.7450 27 1 3.5848 -14.4239 -0.9510 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6574 2.1312 -0.0004 32 1 4.1179 2.1349 0.0001 33 1 4.1329 -2.1331 0.0116 34 1 0.5993 -2.4539 0.3506 35 1 -0.5509 -4.0423 -0.8463 36 1 -0.4014 -5.7934 -1.1268 37 1 0.3601 -4.6435 -2.2523 38 1 2.8383 -8.4426 -1.8160 39 1 4.0364 -8.0173 -0.5702 40 1 2.7780 -9.3531 1.0970 41 1 1.5796 -9.7786 -0.1483 42 1 2.3442 -12.9893 1.4856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:43 Heat of formation + Delta-G solvation = -150.363396 kcal Electronic energy + Delta-G solvation = -26268.367427 eV Core-core repulsion = 22127.866531 eV Total energy + Delta-G solvation = -4140.500896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.09858 -41.26923 -40.14055 -38.78003 -36.32800 -35.26070 -33.63670 -32.77066 -32.45791 -31.07765 -30.00140 -27.01939 -26.26432 -25.18497 -23.61337 -22.29781 -21.78004 -20.70228 -19.91527 -18.80582 -17.84856 -17.39087 -16.71315 -16.36055 -16.13292 -16.07828 -15.85994 -15.58175 -15.33287 -15.13914 -14.48576 -14.29007 -14.14618 -14.02716 -13.79629 -13.56221 -13.14721 -12.72313 -12.56491 -12.42535 -12.34852 -12.22546 -12.10435 -11.86996 -11.68895 -11.25077 -10.99435 -10.91916 -10.74769 -10.63469 -10.09341 -10.06664 -9.95886 -9.61433 -9.19181 -9.03247 -8.49414 -8.40275 -6.04045 -4.08693 0.69436 0.84865 2.11999 2.13543 2.68074 3.13753 3.22714 3.30054 3.37663 3.41796 3.91731 4.15535 4.32967 4.42715 4.42866 4.58332 4.64121 4.72859 4.79016 4.97520 5.02403 5.10336 5.21482 5.31776 5.39462 5.41505 5.49575 5.61656 5.71569 5.79772 5.84627 5.92585 5.99675 6.08421 6.16065 6.49234 6.58510 6.80505 6.84988 7.61647 7.63474 7.68917 7.94824 8.14306 8.33414 8.98396 9.55661 11.06993 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002211 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.571276 B =12660.967460 C =13587.582616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.130 4.130 3 C -0.070 4.070 4 C -0.171 4.171 5 C 0.118 3.882 6 F -0.136 7.136 7 C -0.167 4.167 8 C 0.183 3.817 9 N -0.667 5.667 10 C 0.518 3.482 11 O -0.486 6.486 12 C 0.068 3.932 13 H 0.114 0.886 14 C -0.166 4.166 15 O -0.336 6.336 16 C 0.459 3.541 17 O -0.503 6.503 18 C -0.102 4.102 19 C 0.033 3.967 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.415 0.585 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 28.840 -2.225 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.089 4.089 4 C -0.191 4.191 5 C 0.098 3.902 6 F -0.114 7.114 7 C -0.188 4.188 8 C 0.088 3.912 9 N -0.314 5.314 10 C 0.305 3.695 11 O -0.358 6.358 12 C 0.009 3.991 13 H 0.132 0.868 14 C -0.223 4.223 15 O -0.254 6.254 16 C 0.303 3.697 17 O -0.389 6.389 18 C -0.140 4.140 19 C -0.004 4.004 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.723 3.277 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.603 28.593 -2.229 29.222 hybrid contribution 0.262 -0.785 0.065 0.830 sum -5.341 27.808 -2.164 28.399 Atomic orbital electron populations 1.20743 0.90351 1.03373 1.02685 1.19657 0.96540 0.91395 1.05672 1.20657 0.92913 0.97302 0.97998 1.21112 0.94938 0.97131 1.05932 1.17469 0.77052 0.93978 1.01724 1.91517 1.28808 1.97375 1.93727 1.21366 0.93452 0.99213 1.04766 1.17228 0.90472 0.84723 0.98770 1.43454 1.18939 1.06676 1.62287 1.20586 0.86302 0.85100 0.77538 1.90735 1.19936 1.85561 1.39530 1.22235 0.90175 0.84558 1.02157 0.86817 1.22173 0.94675 1.04532 1.00931 1.86753 1.57746 1.18947 1.61910 1.25008 0.83054 0.82667 0.78984 1.90627 1.34895 1.82946 1.30444 1.21817 0.98077 0.90804 1.03257 1.19040 0.97779 0.88149 0.95415 1.21191 1.19440 0.94155 1.21806 0.92180 1.25022 0.95496 0.98895 0.94938 1.69997 1.33609 1.23041 1.26186 0.86477 0.80406 0.82167 0.78602 1.19606 1.20954 1.20957 0.90733 0.90664 0.91623 0.84547 0.84629 0.82337 0.74719 0.90596 0.89821 0.90677 0.88661 0.88643 0.95553 0.95531 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.45 36.01 0.34 -0.15 16 2 C -0.13 -0.95 5.90 -104.42 -0.62 -1.56 16 3 C -0.07 -0.47 9.69 -39.62 -0.38 -0.85 16 4 C -0.17 -1.41 10.02 -39.48 -0.40 -1.80 16 5 C 0.12 1.30 7.30 -39.45 -0.29 1.01 16 6 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 7 C -0.17 -2.01 8.70 -39.33 -0.34 -2.35 16 8 C 0.18 1.81 6.41 -83.71 -0.54 1.27 16 9 N -0.67 -5.91 4.94 -9.87 -0.05 -5.96 16 10 C 0.52 6.42 6.99 -10.99 -0.08 6.35 16 11 O -0.49 -7.88 13.67 -14.06 -0.19 -8.07 16 12 C 0.07 0.86 2.98 -27.88 -0.08 0.77 16 13 H 0.11 1.38 7.15 -51.93 -0.37 1.01 16 14 C -0.17 -1.58 9.49 37.16 0.35 -1.23 16 15 O -0.34 -5.63 9.42 -45.90 -0.43 -6.06 16 16 C 0.46 8.80 7.93 36.00 0.29 9.08 16 17 O -0.50 -10.68 15.20 -18.75 -0.28 -10.96 16 18 C -0.10 -2.08 5.75 -27.89 -0.16 -2.24 16 19 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 20 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 24 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 30 H 0.06 0.25 6.98 -51.93 -0.36 -0.12 16 31 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 2.26 5.79 -52.49 -0.30 1.95 16 34 H 0.42 2.24 6.99 -40.82 -0.29 1.96 16 35 H 0.08 0.44 7.76 -51.93 -0.40 0.04 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -34.75 365.90 -7.61 -42.37 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.49 Total: -1.17 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.43 Total: -4.39 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.69 Total: -32.02 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.91 Total: -25.10 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.75 -7.61 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.998 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds