Wall clock time and date at job start Tue Mar 31 2020 14:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38149 * 120.01063 * 2 1 4 4 C 1.38219 * 120.09085 * 179.97438 * 3 2 1 5 5 C 1.38530 * 120.12133 * 0.02562 * 4 3 2 6 6 F 1.35096 * 119.99528 * 179.97438 * 5 4 3 7 7 C 1.38322 * 120.01515 * 359.74546 * 5 4 3 8 8 C 1.38847 * 119.90217 * 0.50774 * 7 5 4 9 9 N 1.39926 * 120.05315 * 179.77262 * 8 7 5 10 10 C 1.34773 * 120.00235 * 335.14952 * 9 8 7 11 11 O 1.21290 * 120.00007 * 354.47881 * 10 9 8 12 12 C 1.50702 * 120.00271 * 174.48271 * 10 9 8 13 13 H 1.08999 * 109.47021 * 54.99760 * 12 10 9 14 14 C 1.53004 * 109.46520 * 294.99838 * 12 10 9 15 15 O 1.45201 * 109.47190 * 174.99937 * 12 10 9 16 16 C 1.34226 * 117.00007 * 209.99704 * 15 12 10 17 17 O 1.20827 * 119.99809 * 0.02562 * 16 15 12 18 18 C 1.50694 * 119.99800 * 180.02562 * 16 15 12 19 19 C 1.53005 * 109.46960 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.46956 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00712 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99781 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47377 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47127 * 120.00466 * 24 22 20 27 27 H 1.48510 * 109.46914 * 239.99950 * 24 22 20 28 28 H 1.08996 * 109.46717 * 270.02454 * 1 2 3 29 29 H 1.08997 * 109.46842 * 30.01518 * 1 2 3 30 30 H 1.08992 * 109.47529 * 150.01766 * 1 2 3 31 31 H 1.07999 * 119.95238 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.93887 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.04478 * 180.25192 * 7 5 4 34 34 H 0.97002 * 120.00015 * 155.15814 * 9 8 7 35 35 H 1.08999 * 109.47410 * 299.99684 * 14 12 10 36 36 H 1.08997 * 109.46929 * 60.00475 * 14 12 10 37 37 H 1.09000 * 109.46729 * 179.97438 * 14 12 10 38 38 H 1.09002 * 109.47407 * 299.99649 * 18 16 15 39 39 H 1.08998 * 109.47755 * 59.99918 * 18 16 15 40 40 H 1.08995 * 109.47362 * 299.99762 * 19 18 16 41 41 H 1.09004 * 109.46889 * 59.99841 * 19 18 16 42 42 H 0.96998 * 120.00350 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1963 0.0000 4 6 3.5802 1.1982 0.0005 5 6 4.2771 0.0010 0.0005 6 9 5.6281 0.0058 0.0005 7 6 3.5900 -1.1995 0.0053 8 6 2.2016 -1.2025 -0.0005 9 7 1.5034 -2.4151 -0.0005 10 6 2.0870 -3.5288 -0.4858 11 8 3.1770 -3.4615 -1.0135 12 6 1.3852 -4.8576 -0.3730 13 1 0.3940 -4.7842 -0.8203 14 6 1.2519 -5.2401 1.1025 15 8 2.1561 -5.8727 -1.0684 16 6 1.4726 -6.8952 -1.6059 17 8 0.2699 -6.9403 -1.4993 18 6 2.2053 -7.9869 -2.3424 19 6 1.2001 -9.0216 -2.8523 20 6 1.9327 -10.1129 -3.5893 21 1 3.0077 -10.0725 -3.6849 22 6 1.2305 -11.1632 -4.1416 23 7 -0.0785 -11.2123 -4.0256 24 14 2.1388 -12.5164 -5.0545 25 1 3.5956 -12.2288 -5.0444 26 1 1.8862 -13.8191 -4.3878 27 1 1.6563 -12.5768 -6.4577 28 1 -0.3632 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6575 2.1312 0.0004 32 1 4.1180 2.1349 0.0010 33 1 4.1329 -2.1332 0.0094 34 1 0.5992 -2.4541 0.3487 35 1 2.2431 -5.3136 1.5499 36 1 0.6731 -4.4781 1.6244 37 1 0.7439 -6.2010 1.1842 38 1 2.7438 -7.5572 -3.1871 39 1 2.9128 -8.4689 -1.6677 40 1 0.6611 -9.4514 -2.0080 41 1 0.4929 -8.5392 -3.5272 42 1 -0.5725 -11.9510 -4.4144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:46 Heat of formation + Delta-G solvation = -150.442971 kcal Electronic energy + Delta-G solvation = -26251.715578 eV Core-core repulsion = 22111.211232 eV Total energy + Delta-G solvation = -4140.504347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.11170 -41.26836 -40.14095 -38.78017 -36.32646 -35.25752 -33.63776 -32.77476 -32.43376 -31.07572 -30.02067 -27.02471 -26.26036 -25.16050 -23.63437 -22.31388 -21.76111 -20.69509 -19.91639 -18.78006 -17.83645 -17.38587 -16.77381 -16.37299 -16.26689 -15.99240 -15.83562 -15.58264 -15.32977 -15.12685 -14.48745 -14.28583 -14.19894 -13.91950 -13.80171 -13.55801 -13.12437 -12.73259 -12.59581 -12.40397 -12.31140 -12.23678 -12.12223 -11.93119 -11.62228 -11.24990 -10.99542 -10.90310 -10.78411 -10.63624 -10.09512 -10.06868 -9.94806 -9.61495 -9.19322 -9.03780 -8.49442 -8.40411 -6.04212 -4.08815 0.69196 0.84407 2.11317 2.13901 2.68064 3.14184 3.22703 3.29900 3.37522 3.41708 3.90542 4.15592 4.33768 4.42709 4.43345 4.59058 4.64220 4.73041 4.78781 4.98281 5.04048 5.11686 5.21778 5.31624 5.40430 5.43140 5.49861 5.61702 5.71938 5.80481 5.84298 5.91908 5.99821 6.08421 6.16068 6.49317 6.57975 6.80534 6.84839 7.61673 7.63361 7.68819 7.94697 8.14280 8.33339 8.98275 9.55519 11.06844 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.002160 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.724090 B =12958.075525 C =13610.268612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.129 4.129 3 C -0.070 4.070 4 C -0.172 4.172 5 C 0.117 3.883 6 F -0.136 7.136 7 C -0.167 4.167 8 C 0.183 3.817 9 N -0.667 5.667 10 C 0.518 3.482 11 O -0.486 6.486 12 C 0.068 3.932 13 H 0.113 0.887 14 C -0.165 4.165 15 O -0.336 6.336 16 C 0.459 3.541 17 O -0.503 6.503 18 C -0.102 4.102 19 C 0.033 3.967 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 26.168 12.974 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.088 4.088 4 C -0.191 4.191 5 C 0.097 3.903 6 F -0.115 7.115 7 C -0.188 4.188 8 C 0.088 3.912 9 N -0.313 5.313 10 C 0.305 3.695 11 O -0.358 6.358 12 C 0.009 3.991 13 H 0.130 0.870 14 C -0.222 4.222 15 O -0.253 6.253 16 C 0.303 3.697 17 O -0.389 6.389 18 C -0.140 4.140 19 C -0.004 4.004 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.723 3.277 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.691 25.988 12.582 28.923 hybrid contribution 0.068 -0.711 -0.335 0.789 sum 1.759 25.277 12.246 28.142 Atomic orbital electron populations 1.20748 0.90314 1.03512 1.02654 1.19673 0.96574 0.91412 1.05555 1.20662 0.92914 0.97320 0.97950 1.21110 0.94936 0.97138 1.05931 1.17469 0.77024 0.93997 1.01812 1.91515 1.28829 1.97380 1.93751 1.21350 0.93409 0.99159 1.04866 1.17230 0.90475 0.84724 0.98759 1.43451 1.18925 1.06636 1.62324 1.20592 0.86477 0.85015 0.77453 1.90735 1.19963 1.85605 1.39474 1.22224 0.96390 0.85258 0.95228 0.86956 1.22161 1.03894 1.03975 0.92194 1.86752 1.40932 1.32235 1.65429 1.25005 0.87706 0.81461 0.75526 1.90626 1.15989 1.75950 1.56374 1.21817 1.01014 0.92155 0.98976 1.19038 0.93078 0.91391 0.96867 1.21192 0.93711 1.06604 1.35086 0.92180 1.25022 0.94858 0.98217 0.96254 1.69995 1.06067 1.31773 1.44998 0.86478 0.79973 0.81720 0.79483 1.19606 1.20954 1.20955 0.90742 0.90627 0.91552 0.84537 0.84638 0.82341 0.74704 0.90720 0.90493 0.89834 0.88647 0.88659 0.95523 0.95563 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.45 36.01 0.34 -0.19 16 2 C -0.13 -0.96 5.90 -104.42 -0.62 -1.58 16 3 C -0.07 -0.47 9.69 -39.62 -0.38 -0.86 16 4 C -0.17 -1.39 10.02 -39.48 -0.40 -1.79 16 5 C 0.12 1.26 7.30 -39.44 -0.29 0.97 16 6 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 7 C -0.17 -1.95 8.70 -39.33 -0.34 -2.29 16 8 C 0.18 1.79 6.41 -83.71 -0.54 1.25 16 9 N -0.67 -5.88 4.94 -9.87 -0.05 -5.93 16 10 C 0.52 6.41 6.99 -10.99 -0.08 6.34 16 11 O -0.49 -7.88 13.67 -14.06 -0.19 -8.08 16 12 C 0.07 0.86 2.98 -27.88 -0.08 0.78 16 13 H 0.11 1.35 7.16 -51.93 -0.37 0.98 16 14 C -0.16 -1.60 9.50 37.16 0.35 -1.25 16 15 O -0.34 -5.63 9.42 -45.88 -0.43 -6.06 16 16 C 0.46 8.80 7.93 36.00 0.29 9.08 16 17 O -0.50 -10.66 15.20 -18.75 -0.29 -10.95 16 18 C -0.10 -2.08 5.75 -27.88 -0.16 -2.24 16 19 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 20 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 24 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 6.98 -51.93 -0.36 -0.06 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.16 2.16 5.79 -52.49 -0.30 1.85 16 34 H 0.42 2.24 7.37 -40.82 -0.30 1.94 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -34.69 366.65 -7.63 -42.32 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.52 Total: -1.16 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.43 Total: -4.45 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.69 Total: -31.97 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.91 Total: -25.08 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.69 -7.63 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.121 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds