Wall clock time and date at job start Tue Mar 31 2020 14:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38149 * 120.01063 * 2 1 4 4 C 1.38219 * 120.09085 * 179.97438 * 3 2 1 5 5 C 1.38530 * 120.12133 * 0.02562 * 4 3 2 6 6 F 1.35096 * 119.99528 * 179.97438 * 5 4 3 7 7 C 1.38322 * 120.01515 * 359.74546 * 5 4 3 8 8 C 1.38847 * 119.90217 * 0.50774 * 7 5 4 9 9 N 1.39926 * 120.05315 * 179.77262 * 8 7 5 10 10 C 1.34773 * 120.00235 * 335.14952 * 9 8 7 11 11 O 1.21290 * 120.00007 * 354.47881 * 10 9 8 12 12 C 1.50702 * 120.00271 * 174.48271 * 10 9 8 13 13 H 1.08999 * 109.47021 * 54.99760 * 12 10 9 14 14 C 1.53004 * 109.46520 * 294.99838 * 12 10 9 15 15 O 1.45201 * 109.47190 * 174.99937 * 12 10 9 16 16 C 1.34226 * 117.00007 * 209.99704 * 15 12 10 17 17 O 1.20827 * 119.99809 * 0.02562 * 16 15 12 18 18 C 1.50694 * 119.99800 * 180.02562 * 16 15 12 19 19 C 1.53005 * 109.46960 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.46956 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00712 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99781 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47377 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47127 * 120.00466 * 24 22 20 27 27 H 1.48510 * 109.46914 * 239.99950 * 24 22 20 28 28 H 1.08996 * 109.46717 * 270.02454 * 1 2 3 29 29 H 1.08997 * 109.46842 * 30.01518 * 1 2 3 30 30 H 1.08992 * 109.47529 * 150.01766 * 1 2 3 31 31 H 1.07999 * 119.95238 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.93887 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.04478 * 180.25192 * 7 5 4 34 34 H 0.97002 * 120.00015 * 155.15814 * 9 8 7 35 35 H 1.08999 * 109.47410 * 299.99684 * 14 12 10 36 36 H 1.08997 * 109.46929 * 60.00475 * 14 12 10 37 37 H 1.09000 * 109.46729 * 179.97438 * 14 12 10 38 38 H 1.09002 * 109.47407 * 299.99649 * 18 16 15 39 39 H 1.08998 * 109.47755 * 59.99918 * 18 16 15 40 40 H 1.08995 * 109.47362 * 299.99762 * 19 18 16 41 41 H 1.09004 * 109.46889 * 59.99841 * 19 18 16 42 42 H 0.96998 * 120.00350 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1963 0.0000 4 6 3.5802 1.1982 0.0005 5 6 4.2771 0.0010 0.0005 6 9 5.6281 0.0058 0.0005 7 6 3.5900 -1.1995 0.0053 8 6 2.2016 -1.2025 -0.0005 9 7 1.5034 -2.4151 -0.0005 10 6 2.0870 -3.5288 -0.4858 11 8 3.1770 -3.4615 -1.0135 12 6 1.3852 -4.8576 -0.3730 13 1 0.3940 -4.7842 -0.8203 14 6 1.2519 -5.2401 1.1025 15 8 2.1561 -5.8727 -1.0684 16 6 1.4726 -6.8952 -1.6059 17 8 0.2699 -6.9403 -1.4993 18 6 2.2053 -7.9869 -2.3424 19 6 1.2001 -9.0216 -2.8523 20 6 1.9327 -10.1129 -3.5893 21 1 3.0077 -10.0725 -3.6849 22 6 1.2305 -11.1632 -4.1416 23 7 -0.0785 -11.2123 -4.0256 24 14 2.1388 -12.5164 -5.0545 25 1 3.5956 -12.2288 -5.0444 26 1 1.8862 -13.8191 -4.3878 27 1 1.6563 -12.5768 -6.4577 28 1 -0.3632 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6575 2.1312 0.0004 32 1 4.1180 2.1349 0.0010 33 1 4.1329 -2.1332 0.0094 34 1 0.5992 -2.4541 0.3487 35 1 2.2431 -5.3136 1.5499 36 1 0.6731 -4.4781 1.6244 37 1 0.7439 -6.2010 1.1842 38 1 2.7438 -7.5572 -3.1871 39 1 2.9128 -8.4689 -1.6677 40 1 0.6611 -9.4514 -2.0080 41 1 0.4929 -8.5392 -3.5272 42 1 -0.5725 -11.9510 -4.4144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:45 Heat of formation + Delta-G solvation = -170.724354 kcal Electronic energy + Delta-G solvation = -26252.595045 eV Core-core repulsion = 22111.211232 eV Total energy + Delta-G solvation = -4141.383813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94747 -42.26414 -41.41251 -39.66857 -37.73539 -36.12787 -35.66913 -33.63934 -33.33945 -32.86060 -30.77497 -28.13599 -27.56994 -26.18033 -24.74158 -23.75409 -22.53354 -21.76671 -21.39428 -19.63912 -19.27110 -18.50075 -18.24470 -17.64261 -17.42635 -17.02902 -16.74805 -16.55405 -16.49379 -16.32155 -16.10681 -15.39665 -15.08721 -14.76711 -14.49387 -14.44882 -14.38180 -14.29161 -13.93673 -13.47808 -13.27249 -13.09108 -12.96375 -12.88292 -12.82626 -12.64252 -12.50613 -12.40368 -12.07403 -11.99455 -11.77308 -11.69286 -11.51679 -11.28629 -10.93723 -10.59173 -9.75676 -9.19397 -8.21369 -6.34384 -0.02017 0.14159 1.03235 1.17817 1.22202 1.43166 1.43431 1.57218 2.02950 2.42549 2.54991 3.08108 3.12597 3.37402 3.63257 3.73525 3.76631 3.84417 3.86708 4.03521 4.18670 4.34118 4.36852 4.40941 4.54578 4.57040 4.67957 4.84884 4.86475 4.95097 4.97127 5.00209 5.14175 5.19737 5.23181 5.28139 5.38318 5.45832 5.54150 5.79419 5.88426 6.08750 6.12665 6.67859 6.76657 6.83675 7.35552 8.91291 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.002160 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.724090 B =12958.075525 C =13610.268612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.117 4.117 3 C -0.064 4.064 4 C -0.164 4.164 5 C 0.088 3.912 6 F -0.151 7.151 7 C -0.190 4.190 8 C 0.163 3.837 9 N -0.645 5.645 10 C 0.522 3.478 11 O -0.532 6.532 12 C 0.061 3.939 13 H 0.121 0.879 14 C -0.160 4.160 15 O -0.342 6.342 16 C 0.470 3.530 17 O -0.529 6.529 18 C -0.096 4.096 19 C 0.041 3.959 20 C -0.545 4.545 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.972 3.028 25 H -0.257 1.257 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.130 0.870 34 H 0.433 0.567 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.116 0.884 40 H -0.004 1.004 41 H -0.007 1.007 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 28.125 13.578 31.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.183 4.183 5 C 0.068 3.932 6 F -0.130 7.130 7 C -0.211 4.211 8 C 0.068 3.932 9 N -0.293 5.293 10 C 0.309 3.691 11 O -0.407 6.407 12 C 0.003 3.997 13 H 0.139 0.861 14 C -0.217 4.217 15 O -0.258 6.258 16 C 0.315 3.685 17 O -0.418 6.418 18 C -0.134 4.134 19 C 0.004 3.996 20 C -0.583 4.583 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.796 3.204 25 H -0.181 1.181 26 H -0.204 1.204 27 H -0.206 1.206 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.148 0.852 34 H 0.274 0.726 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.275 27.990 13.223 30.982 hybrid contribution 0.142 -1.147 -0.454 1.241 sum 1.417 26.843 12.768 29.759 Atomic orbital electron populations 1.20881 0.87821 1.04426 1.04265 1.20073 0.98274 0.90486 1.03128 1.21154 0.92359 0.98602 0.96070 1.21439 0.95795 0.96789 1.04257 1.17771 0.76642 0.94931 1.03848 1.91467 1.29940 1.97483 1.94116 1.21255 0.94601 0.98504 1.06770 1.17382 0.89943 0.85654 1.00175 1.43179 1.19366 1.05553 1.61176 1.20529 0.85815 0.85615 0.77127 1.90735 1.21904 1.86218 1.41881 1.22638 0.96082 0.84372 0.96646 0.86133 1.22199 1.04472 1.04748 0.90284 1.86675 1.41341 1.32379 1.65436 1.24505 0.86988 0.81775 0.75231 1.90613 1.16952 1.76740 1.57500 1.21547 0.99823 0.91792 1.00201 1.18795 0.93442 0.92388 0.95016 1.21658 0.94544 1.07080 1.34969 0.90812 1.26050 0.95672 1.01077 0.97212 1.70142 1.07980 1.32896 1.46267 0.85293 0.79171 0.78106 0.77813 1.18057 1.20421 1.20566 0.88625 0.88942 0.91503 0.80680 0.82442 0.85242 0.72566 0.90817 0.86369 0.90953 0.87211 0.86626 0.98543 0.98901 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.45 71.24 0.67 0.07 16 2 C -0.12 -1.40 5.90 -19.73 -0.12 -1.51 16 3 C -0.06 -0.64 9.69 22.24 0.22 -0.42 16 4 C -0.16 -2.34 10.02 22.33 0.22 -2.12 16 5 C 0.09 1.93 7.30 22.36 0.16 2.09 16 6 F -0.15 -3.79 17.27 44.97 0.78 -3.02 16 7 C -0.19 -4.63 8.70 22.44 0.20 -4.43 16 8 C 0.16 3.03 6.41 38.14 0.24 3.28 16 9 N -0.64 -10.62 4.94 -303.53 -1.50 -12.12 16 10 C 0.52 12.93 6.99 87.66 0.61 13.54 16 11 O -0.53 -18.02 13.67 15.69 0.21 -17.80 16 12 C 0.06 1.51 2.98 29.85 0.09 1.60 16 13 H 0.12 2.82 7.16 -2.39 -0.02 2.80 16 14 C -0.16 -2.92 9.50 71.98 0.68 -2.23 16 15 O -0.34 -11.53 9.42 -45.04 -0.42 -11.96 16 16 C 0.47 18.30 7.93 71.23 0.56 18.87 16 17 O -0.53 -22.99 15.20 21.96 0.33 -22.66 16 18 C -0.10 -3.97 5.75 29.85 0.17 -3.79 16 19 C 0.04 2.20 4.26 29.85 0.13 2.32 16 20 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 21 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 22 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 23 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 24 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 28 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.09 0.24 8.09 -2.39 -0.02 0.22 16 30 H 0.07 0.37 6.98 -2.39 -0.02 0.36 16 31 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.13 3.88 5.79 -2.91 -0.02 3.87 16 34 H 0.43 3.62 7.37 -92.71 -0.68 2.94 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 1.14 8.12 -2.39 -0.02 1.12 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 39 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 40 H 0.00 -0.23 8.10 -2.39 -0.02 -0.25 16 41 H -0.01 -0.44 8.10 -2.38 -0.02 -0.46 16 42 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -79.44 366.65 6.63 -72.81 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.37 Total: 8.67 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 4.54 Total: -2.74 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.21 Total: -69.29 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: 0.12 Total: -52.42 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -79.44 6.63 -72.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.915 kcal (2) G-P(sol) polarization free energy of solvation -79.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds