Wall clock time and date at job start Tue Mar 31 2020 13:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48497 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47451 * 300.00065 * 3 2 1 6 6 H 1.48505 * 109.46906 * 59.99970 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46592 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00303 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99603 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47147 * 180.02562 * 14 13 11 16 16 C 1.33644 * 122.74912 * 359.70944 * 15 14 13 17 17 S 1.76196 * 107.92180 * 179.97438 * 16 15 14 18 18 C 1.70973 * 90.28301 * 0.27566 * 17 16 15 19 19 C 1.50700 * 124.91655 * 179.84288 * 18 17 16 20 20 C 1.52996 * 109.47513 * 59.99493 * 19 18 17 21 21 C 1.52994 * 109.47420 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47177 * 60.00225 * 21 20 19 23 23 C 1.52999 * 109.47166 * 299.99834 * 22 21 20 24 24 C 1.53004 * 109.46871 * 60.00148 * 23 22 21 25 25 N 1.29023 * 110.17212 * 359.83743 * 18 17 16 26 26 H 0.97007 * 119.99423 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46702 * 59.99702 * 9 7 2 28 28 H 1.08994 * 109.46891 * 300.00554 * 9 7 2 29 29 H 1.08998 * 109.46820 * 60.00578 * 10 9 7 30 30 H 1.08994 * 109.47315 * 299.99860 * 10 9 7 31 31 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 32 32 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 33 33 H 1.07996 * 126.03684 * 0.03407 * 16 15 14 34 34 H 1.08997 * 109.47284 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47378 * 300.00228 * 20 19 18 36 36 H 1.09002 * 109.47008 * 59.99849 * 20 19 18 37 37 H 1.08997 * 109.47171 * 300.00069 * 21 20 19 38 38 H 1.09008 * 109.47190 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47519 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47123 * 60.00272 * 22 21 20 41 41 H 1.08997 * 109.47083 * 300.00096 * 23 22 21 42 42 H 1.09001 * 109.47516 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46818 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47310 * 60.00087 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4916 -4.9672 -0.0033 12 8 0.2833 -4.9671 -0.0033 13 8 2.1627 -6.1296 -0.0037 14 6 1.3718 -7.3474 -0.0048 15 6 2.2897 -8.5426 -0.0044 16 6 3.6215 -8.4313 -0.0090 17 16 4.3015 -10.0568 -0.0060 18 6 2.7275 -10.7243 -0.0071 19 6 2.4158 -12.1988 -0.0090 20 6 3.0158 -12.8485 1.2395 21 6 2.7000 -14.3455 1.2373 22 6 3.3008 -14.9916 -0.0127 23 6 2.7008 -14.3420 -1.2612 24 6 3.0167 -12.8449 -1.2590 25 7 1.8450 -9.7831 -0.0061 26 1 -0.4849 0.8402 -0.0004 27 1 0.6246 -2.5562 -0.8920 28 1 0.6239 -2.5574 0.8879 29 1 2.8717 -3.6052 0.8873 30 1 2.8718 -3.6036 -0.8926 31 1 0.7426 -7.3728 0.8849 32 1 0.7433 -7.3717 -0.8951 33 1 4.1819 -7.5081 -0.0128 34 1 1.3353 -12.3418 -0.0089 35 1 4.0965 -12.7055 1.2398 36 1 2.5882 -12.3878 2.1300 37 1 1.6195 -14.4888 1.2367 38 1 3.1271 -14.8083 2.1270 39 1 3.0763 -16.0582 -0.0141 40 1 4.3814 -14.8483 -0.0121 41 1 1.6203 -14.4854 -1.2617 42 1 3.1292 -14.8020 -2.1517 43 1 2.5888 -12.3821 -2.1483 44 1 4.0972 -12.7016 -1.2584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:42 Heat of formation + Delta-G solvation = -79.964031 kcal Electronic energy + Delta-G solvation = -23636.916802 eV Core-core repulsion = 20065.681828 eV Total energy + Delta-G solvation = -3571.234974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50693 -39.81669 -38.70507 -36.22412 -33.60999 -32.92149 -31.24647 -31.23242 -30.08553 -27.64030 -25.98049 -24.83247 -23.07123 -22.43966 -21.70941 -20.63476 -19.89165 -19.46293 -17.96475 -17.19596 -16.49817 -16.42309 -15.93008 -15.69493 -15.12654 -15.02510 -14.64570 -14.57874 -14.46995 -13.91836 -13.70834 -13.25043 -12.92664 -12.85447 -12.67746 -12.52104 -12.26936 -12.24588 -11.70282 -11.64226 -11.45571 -11.21245 -11.00074 -10.99460 -10.77133 -10.71211 -10.64129 -10.54118 -10.08183 -9.98201 -9.87600 -9.60718 -9.59108 -9.18464 -8.87729 -8.39651 -6.03167 -4.08168 0.51090 1.13791 1.52952 2.51946 2.77206 2.77286 3.29833 3.37224 3.40647 3.75930 4.22912 4.28280 4.39188 4.44964 4.72843 4.76284 4.78654 4.98829 4.99629 5.01456 5.09987 5.15380 5.21231 5.30529 5.32387 5.32583 5.42393 5.56407 5.60644 5.64094 5.64310 5.71016 5.76215 5.83267 5.88475 5.96786 6.08205 6.15446 6.58823 6.87628 7.49774 7.64818 7.70997 7.96107 8.20899 8.36610 8.99099 9.56086 11.07853 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.043349 B = 0.001821 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.766244 B =15372.476002 C =15661.559489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.460 3.540 12 O -0.501 6.501 13 O -0.366 6.366 14 C 0.143 3.857 15 C 0.061 3.939 16 C -0.230 4.230 17 S 0.118 5.882 18 C 0.057 3.943 19 C -0.010 4.010 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.114 4.114 25 N -0.465 5.465 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.187 0.813 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.931 -31.580 -0.033 33.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.303 3.697 12 O -0.387 6.387 13 O -0.284 6.284 14 C 0.066 3.934 15 C -0.069 4.069 16 C -0.368 4.368 17 S 0.373 5.627 18 C -0.222 4.222 19 C -0.032 4.032 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.152 4.152 25 N -0.180 5.180 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.204 0.796 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.849 -32.016 -0.030 33.497 hybrid contribution -0.321 1.740 0.000 1.769 sum 9.528 -30.277 -0.030 31.740 Atomic orbital electron populations 1.70007 1.06099 1.26675 1.49931 1.25026 0.94860 0.99366 0.95105 0.86480 0.79998 0.83537 0.77627 1.19661 1.20958 1.20963 1.21183 0.93106 0.90595 1.51785 0.92231 1.19041 0.93249 0.89259 0.98994 1.21783 1.00700 0.87318 1.04082 1.24812 0.88005 0.85206 0.71661 1.90656 1.15830 1.87479 1.44719 1.86454 1.42065 1.14703 1.85161 1.20827 0.90159 0.78425 1.03964 1.19735 0.91968 0.91684 1.03545 1.26930 0.97771 1.01327 1.10822 1.83861 1.11589 0.98852 1.68379 1.26990 0.91906 0.99845 1.03479 1.19879 1.02683 0.84178 0.96489 1.21673 1.01015 0.95788 0.96752 1.21518 1.01365 0.94503 0.98132 1.21577 1.00421 0.99500 0.94489 1.21520 1.01364 0.94497 0.98137 1.21677 1.01010 0.95802 0.96735 1.65848 1.37204 0.98693 1.16226 0.92878 0.95518 0.95504 0.88849 0.88840 0.89336 0.89328 0.79552 0.88049 0.91428 0.91225 0.91575 0.91494 0.91798 0.91822 0.91569 0.91493 0.91226 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 11 C 0.46 8.99 7.96 36.01 0.29 9.28 16 12 O -0.50 -11.43 15.73 -18.75 -0.29 -11.72 16 13 O -0.37 -6.00 9.14 -39.25 -0.36 -6.35 16 14 C 0.14 2.14 6.08 36.01 0.22 2.36 16 15 C 0.06 0.84 6.74 -84.22 -0.57 0.27 16 16 C -0.23 -2.74 10.57 29.12 0.31 -2.43 16 17 S 0.12 1.11 22.53 -107.50 -2.42 -1.31 16 18 C 0.06 0.59 6.03 -13.46 -0.08 0.51 16 19 C -0.01 -0.08 2.62 -91.77 -0.24 -0.32 16 20 C -0.11 -0.72 5.10 -26.74 -0.14 -0.86 16 21 C -0.12 -0.58 5.92 -26.74 -0.16 -0.74 16 22 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 23 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16 24 C -0.11 -0.72 5.10 -26.73 -0.14 -0.85 16 25 N -0.46 -6.15 10.53 -8.06 -0.08 -6.24 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 27 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 28 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 31 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 32 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.19 2.07 7.56 -52.49 -0.40 1.67 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.41 7.93 -51.93 -0.41 0.00 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.41 7.93 -51.93 -0.41 0.00 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -32.33 376.11 -10.39 -42.72 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.10 Total: -3.75 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.51 Total: -9.16 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.65 Total: -32.46 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.65 Total: -18.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.42 Total: -1.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.33 -10.39 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.241 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds