Wall clock time and date at job start Tue Mar 31 2020 13:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48497 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47451 * 300.00065 * 3 2 1 6 6 H 1.48505 * 109.46906 * 59.99970 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46592 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00303 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99603 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47147 * 180.02562 * 14 13 11 16 16 C 1.33644 * 122.74912 * 359.70944 * 15 14 13 17 17 S 1.76196 * 107.92180 * 179.97438 * 16 15 14 18 18 C 1.70973 * 90.28301 * 0.27566 * 17 16 15 19 19 C 1.50700 * 124.91655 * 179.84288 * 18 17 16 20 20 C 1.52996 * 109.47513 * 59.99493 * 19 18 17 21 21 C 1.52994 * 109.47420 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47177 * 60.00225 * 21 20 19 23 23 C 1.52999 * 109.47166 * 299.99834 * 22 21 20 24 24 C 1.53004 * 109.46871 * 60.00148 * 23 22 21 25 25 N 1.29023 * 110.17212 * 359.83743 * 18 17 16 26 26 H 0.97007 * 119.99423 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46702 * 59.99702 * 9 7 2 28 28 H 1.08994 * 109.46891 * 300.00554 * 9 7 2 29 29 H 1.08998 * 109.46820 * 60.00578 * 10 9 7 30 30 H 1.08994 * 109.47315 * 299.99860 * 10 9 7 31 31 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 32 32 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 33 33 H 1.07996 * 126.03684 * 0.03407 * 16 15 14 34 34 H 1.08997 * 109.47284 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47378 * 300.00228 * 20 19 18 36 36 H 1.09002 * 109.47008 * 59.99849 * 20 19 18 37 37 H 1.08997 * 109.47171 * 300.00069 * 21 20 19 38 38 H 1.09008 * 109.47190 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47519 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47123 * 60.00272 * 22 21 20 41 41 H 1.08997 * 109.47083 * 300.00096 * 23 22 21 42 42 H 1.09001 * 109.47516 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46818 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47310 * 60.00087 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4916 -4.9672 -0.0033 12 8 0.2833 -4.9671 -0.0033 13 8 2.1627 -6.1296 -0.0037 14 6 1.3718 -7.3474 -0.0048 15 6 2.2897 -8.5426 -0.0044 16 6 3.6215 -8.4313 -0.0090 17 16 4.3015 -10.0568 -0.0060 18 6 2.7275 -10.7243 -0.0071 19 6 2.4158 -12.1988 -0.0090 20 6 3.0158 -12.8485 1.2395 21 6 2.7000 -14.3455 1.2373 22 6 3.3008 -14.9916 -0.0127 23 6 2.7008 -14.3420 -1.2612 24 6 3.0167 -12.8449 -1.2590 25 7 1.8450 -9.7831 -0.0061 26 1 -0.4849 0.8402 -0.0004 27 1 0.6246 -2.5562 -0.8920 28 1 0.6239 -2.5574 0.8879 29 1 2.8717 -3.6052 0.8873 30 1 2.8718 -3.6036 -0.8926 31 1 0.7426 -7.3728 0.8849 32 1 0.7433 -7.3717 -0.8951 33 1 4.1819 -7.5081 -0.0128 34 1 1.3353 -12.3418 -0.0089 35 1 4.0965 -12.7055 1.2398 36 1 2.5882 -12.3878 2.1300 37 1 1.6195 -14.4888 1.2367 38 1 3.1271 -14.8083 2.1270 39 1 3.0763 -16.0582 -0.0141 40 1 4.3814 -14.8483 -0.0121 41 1 1.6203 -14.4854 -1.2617 42 1 3.1292 -14.8020 -2.1517 43 1 2.5888 -12.3821 -2.1483 44 1 4.0972 -12.7016 -1.2584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:41 Heat of formation + Delta-G solvation = -96.930524 kcal Electronic energy + Delta-G solvation = -23637.652524 eV Core-core repulsion = 20065.681828 eV Total energy + Delta-G solvation = -3571.970697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74373 -40.98874 -39.30437 -37.72637 -35.66193 -33.68658 -33.12808 -31.69207 -30.99973 -28.84832 -27.75322 -25.73357 -24.11579 -23.51763 -22.57593 -21.60302 -21.21417 -20.22314 -19.25551 -18.56974 -18.13902 -17.85895 -17.26686 -16.56992 -16.43541 -16.11342 -15.98945 -15.24261 -15.10050 -15.00965 -14.94111 -14.28057 -14.06470 -14.05816 -13.94946 -13.46559 -13.30929 -13.20549 -13.12187 -12.86486 -12.50484 -12.45660 -12.12321 -12.07917 -12.06231 -11.97219 -11.76764 -11.50652 -11.42805 -11.27604 -11.22194 -11.10734 -10.73101 -10.59046 -10.43985 -9.75464 -8.20378 -6.34081 -0.35931 0.30963 0.65152 1.17454 1.38631 1.44551 1.45672 1.56663 1.58407 2.42515 2.92220 3.13837 3.56217 3.75289 3.80248 3.86354 4.03529 4.06466 4.08923 4.27377 4.31526 4.34931 4.41441 4.44962 4.49142 4.55314 4.57162 4.57701 4.71877 4.87172 4.91103 5.00214 5.10444 5.16020 5.23020 5.25029 5.29165 5.37615 5.40471 5.47214 5.54539 5.55972 5.80424 6.12260 6.60588 6.72233 6.85115 7.36356 8.92512 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.043349 B = 0.001821 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.766244 B =15372.476002 C =15661.559489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.036 3.964 10 C -0.091 4.091 11 C 0.469 3.531 12 O -0.541 6.541 13 O -0.348 6.348 14 C 0.144 3.856 15 C 0.042 3.958 16 C -0.243 4.243 17 S 0.185 5.815 18 C 0.050 3.950 19 C -0.011 4.011 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.111 4.111 25 N -0.498 5.498 26 H 0.263 0.737 27 H -0.010 1.010 28 H -0.010 1.010 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.194 0.806 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.089 -32.839 -0.036 35.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.098 0.902 9 C -0.002 4.002 10 C -0.128 4.128 11 C 0.315 3.685 12 O -0.430 6.430 13 O -0.265 6.265 14 C 0.068 3.932 15 C -0.089 4.089 16 C -0.383 4.383 17 S 0.441 5.559 18 C -0.228 4.228 19 C -0.033 4.033 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.149 4.149 25 N -0.214 5.214 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.211 0.789 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.053 -33.315 -0.033 35.781 hybrid contribution -1.286 1.989 0.001 2.369 sum 11.768 -31.326 -0.032 33.463 Atomic orbital electron populations 1.70174 1.08261 1.27851 1.51331 1.26109 0.95725 1.03909 0.94555 0.85252 0.79327 0.78038 0.77498 1.17582 1.20695 1.20707 1.21675 0.94182 0.91175 1.50967 0.90245 1.18832 0.93765 0.92010 0.95555 1.21541 0.99296 0.85342 1.06596 1.24613 0.87228 0.86027 0.70679 1.90653 1.17554 1.88105 1.46726 1.86404 1.41356 1.14376 1.84353 1.20844 0.90547 0.78332 1.03512 1.19520 0.92348 0.91399 1.05624 1.27142 0.97545 1.03437 1.10159 1.83582 1.09489 0.96098 1.66712 1.27518 0.92626 1.00599 1.02030 1.20014 1.02511 0.82773 0.97966 1.21669 1.01153 0.96623 0.95499 1.21516 1.01418 0.93447 0.98939 1.21576 1.00585 0.99908 0.93719 1.21518 1.01416 0.93440 0.98944 1.21673 1.01147 0.96639 0.95480 1.65831 1.38653 0.98915 1.17964 0.92787 0.99137 0.99126 0.86222 0.86209 0.89934 0.89921 0.78854 0.88947 0.90745 0.92122 0.91795 0.90550 0.90865 0.91325 0.91789 0.90548 0.92122 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.04 1.92 4.26 29.85 0.13 2.05 16 10 C -0.09 -3.58 5.75 29.85 0.17 -3.40 16 11 C 0.47 18.51 7.96 71.24 0.57 19.07 16 12 O -0.54 -25.69 15.73 21.96 0.35 -25.35 16 13 O -0.35 -11.28 9.14 -51.40 -0.47 -11.75 16 14 C 0.14 4.42 6.08 71.24 0.43 4.85 16 15 C 0.04 1.14 6.74 41.52 0.28 1.42 16 16 C -0.24 -5.49 10.57 66.78 0.71 -4.79 16 17 S 0.19 3.09 22.53 -56.49 -1.27 1.82 16 18 C 0.05 1.00 6.03 88.52 0.53 1.54 16 19 C -0.01 -0.15 2.62 -11.54 -0.03 -0.18 16 20 C -0.11 -1.23 5.10 30.59 0.16 -1.08 16 21 C -0.12 -0.93 5.92 30.59 0.18 -0.75 16 22 C -0.12 -0.80 5.92 30.59 0.18 -0.62 16 23 C -0.12 -0.93 5.92 30.60 0.18 -0.75 16 24 C -0.11 -1.23 5.10 30.60 0.16 -1.08 16 25 N -0.50 -13.20 10.53 -179.40 -1.89 -15.09 16 26 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 27 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 28 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 29 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 30 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 31 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 32 H 0.08 2.60 8.13 -2.38 -0.02 2.58 16 33 H 0.19 3.96 7.56 -2.91 -0.02 3.93 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 0.72 7.93 -2.39 -0.02 0.70 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.72 7.93 -2.39 -0.02 0.70 16 Total: -1.00 -71.67 376.11 4.34 -67.33 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.98 Total: 8.82 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.34 Total: -13.39 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.60 Total: -73.12 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.12 Total: -37.10 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.27 Total: 1.82 kcal Total: -71.67 4.34 -67.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.598 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds