Wall clock time and date at job start Tue Mar 31 2020 14:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.92287 * 2 1 4 4 C 1.38144 * 120.11406 * 179.76837 * 3 2 1 5 5 C 1.38812 * 119.95117 * 0.50448 * 4 3 2 6 6 N 1.40042 * 120.07848 * 179.77144 * 5 4 3 7 7 C 1.34778 * 119.99628 * 335.22896 * 6 5 4 8 8 O 1.21287 * 120.00599 * 354.59205 * 7 6 5 9 9 C 1.50706 * 119.99604 * 174.58608 * 7 6 5 10 10 H 1.08991 * 109.47388 * 305.00323 * 9 7 6 11 11 C 1.53000 * 109.47077 * 65.00404 * 9 7 6 12 12 O 1.45200 * 109.46894 * 184.99967 * 9 7 6 13 13 C 1.34229 * 116.99685 * 150.00082 * 12 9 7 14 14 O 1.20827 * 120.00232 * 0.02562 * 13 12 9 15 15 C 1.50698 * 120.00017 * 180.02562 * 13 12 9 16 16 C 1.53002 * 109.47491 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47491 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00022 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00731 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99716 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46974 * 90.00003 * 21 19 17 23 23 H 1.48495 * 109.47270 * 209.99888 * 21 19 17 24 24 H 1.48497 * 109.47320 * 330.00179 * 21 19 17 25 25 C 1.39056 * 119.84299 * 359.49703 * 5 4 3 26 26 F 1.35097 * 120.05200 * 180.27685 * 25 5 4 27 27 C 1.38260 * 119.92130 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46934 * 269.98514 * 1 2 3 29 29 H 1.09006 * 109.46774 * 29.97676 * 1 2 3 30 30 H 1.08993 * 109.47166 * 149.98322 * 1 2 3 31 31 H 1.07998 * 119.94233 * 0.03701 * 3 2 1 32 32 H 1.07999 * 120.02607 * 180.24997 * 4 3 2 33 33 H 0.96998 * 120.00313 * 155.51275 * 6 5 4 34 34 H 1.09002 * 109.47069 * 300.00094 * 11 9 7 35 35 H 1.09005 * 109.46956 * 59.99713 * 11 9 7 36 36 H 1.08997 * 109.47513 * 179.97438 * 11 9 7 37 37 H 1.09003 * 109.47406 * 300.00191 * 15 13 12 38 38 H 1.08998 * 109.47354 * 60.00108 * 15 13 12 39 39 H 1.09001 * 109.46612 * 299.99911 * 16 15 13 40 40 H 1.08998 * 109.46847 * 59.99659 * 16 15 13 41 41 H 0.96997 * 120.00310 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.98008 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5782 1.2031 0.0048 5 6 4.2753 0.0027 -0.0009 6 7 5.6757 0.0043 -0.0009 7 6 6.3484 1.0673 -0.4848 8 8 5.7450 1.9793 -1.0095 9 6 7.8503 1.1227 -0.3739 10 1 8.1426 0.9953 0.6683 11 6 8.4655 0.0036 -1.2166 12 8 8.3241 2.4078 -0.8560 13 6 9.4493 2.8885 -0.3040 14 8 10.0196 2.2562 0.5532 15 6 10.0011 4.2168 -0.7534 16 6 11.2795 4.5285 0.0274 17 6 11.8310 5.8571 -0.4216 18 1 11.3206 6.4229 -1.1869 19 6 12.9867 6.3510 0.1454 20 7 13.4678 7.5107 -0.2460 21 14 13.8685 5.3734 1.4707 22 1 14.8609 4.4668 0.8393 23 1 14.5659 6.3059 2.3922 24 1 12.8797 4.5703 2.2339 25 6 3.5798 -1.2014 -0.0009 26 9 4.2539 -2.3721 -0.0008 27 6 2.1967 -1.1983 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6546 2.1325 0.0006 32 1 4.1155 2.1400 0.0089 33 1 6.1616 -0.7612 0.3437 34 1 8.1098 -0.9611 -0.8548 35 1 8.1732 0.1311 -2.2589 36 1 9.5518 0.0439 -1.1368 37 1 10.2277 4.1745 -1.8188 38 1 9.2633 4.9978 -0.5696 39 1 11.0533 4.5708 1.0928 40 1 12.0172 3.7475 -0.1568 41 1 14.2806 7.8583 0.1532 42 1 1.6550 -2.1327 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:53 Heat of formation + Delta-G solvation = -148.468436 kcal Electronic energy + Delta-G solvation = -26197.296030 eV Core-core repulsion = 22056.877306 eV Total energy + Delta-G solvation = -4140.418724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.31616 -41.16983 -40.16609 -38.91323 -36.48544 -35.51829 -33.68601 -32.87579 -31.59384 -31.11932 -30.96665 -27.14160 -26.67094 -24.84518 -23.61312 -22.47250 -21.65898 -20.62525 -19.90795 -18.79082 -17.93480 -17.36025 -17.20433 -16.80075 -16.47900 -16.10926 -16.07728 -15.63805 -15.29684 -14.74306 -14.37485 -14.24485 -14.04695 -14.02962 -13.83194 -13.68588 -13.28717 -12.80999 -12.65258 -12.60537 -12.51638 -12.36511 -12.19808 -11.92183 -11.73378 -11.50029 -11.05896 -10.89079 -10.78311 -10.37847 -10.22231 -10.08932 -9.93110 -9.75606 -9.28466 -9.22991 -8.57868 -8.41876 -6.08900 -4.09104 0.64139 0.81444 2.06488 2.09842 2.54955 3.07700 3.20523 3.32043 3.39277 3.47442 3.73674 4.04464 4.26221 4.43893 4.44822 4.53960 4.66748 4.75433 4.80092 4.96755 5.04859 5.11762 5.18018 5.25470 5.35711 5.40250 5.46664 5.54387 5.70880 5.76427 5.77426 5.95104 5.95795 5.97731 6.12235 6.36074 6.53166 6.64129 6.79233 7.19167 7.26876 7.58498 7.67639 8.05285 8.44670 8.93591 9.52398 11.03625 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026967 B = 0.002173 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.037883 B =12879.964439 C =13451.244584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.105 4.105 4 C -0.102 4.102 5 C 0.118 3.882 6 N -0.667 5.667 7 C 0.521 3.479 8 O -0.488 6.488 9 C 0.069 3.931 10 H 0.114 0.886 11 C -0.166 4.166 12 O -0.333 6.333 13 C 0.460 3.540 14 O -0.509 6.509 15 C -0.094 4.094 16 C -0.001 4.001 17 C -0.528 4.528 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.262 1.262 25 C 0.069 3.931 26 F -0.138 7.138 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.157 0.843 33 H 0.415 0.585 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.026 0.974 40 H 0.022 0.978 41 H 0.265 0.735 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.924 -20.450 0.705 32.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.122 4.122 5 C 0.023 3.977 6 N -0.313 5.313 7 C 0.308 3.692 8 O -0.360 6.360 9 C 0.010 3.990 10 H 0.132 0.868 11 C -0.224 4.224 12 O -0.250 6.250 13 C 0.304 3.696 14 O -0.396 6.396 15 C -0.132 4.132 16 C -0.039 4.039 17 C -0.566 4.566 18 H 0.094 0.906 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.186 1.186 25 C 0.047 3.953 26 F -0.117 7.117 27 C -0.153 4.153 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.926 -19.863 0.615 31.879 hybrid contribution 1.036 -1.238 0.943 1.869 sum -23.890 -21.101 1.558 31.913 Atomic orbital electron populations 1.20792 0.90296 1.03201 1.02681 1.19777 0.96584 0.92123 0.99541 1.21074 0.93427 0.98081 0.99801 1.21419 0.94282 0.97697 0.98804 1.17760 0.82765 0.93246 1.03941 1.43301 1.04358 1.21111 1.62552 1.20485 0.89442 0.81826 0.77468 1.90717 1.69235 1.36260 1.39812 1.22244 0.89785 0.84857 1.02144 0.86814 1.22180 1.03146 0.96083 1.00980 1.86740 1.42237 1.34199 1.61844 1.24970 0.77054 0.88765 0.78799 1.90615 1.58423 1.59715 1.30811 1.21589 1.00179 0.88057 1.03327 1.19495 0.90904 0.97617 0.95879 1.21019 1.09607 1.02687 1.23242 0.90571 1.24955 0.96868 0.94771 0.96518 1.69898 1.22199 1.18637 1.43017 0.86803 0.80245 0.80154 0.82372 1.20163 1.21300 1.18637 1.17341 0.90249 0.79637 1.08063 1.91480 1.80302 1.45574 1.94348 1.20826 0.91219 0.99539 1.03716 0.90797 0.91041 0.91325 0.84772 0.82541 0.74788 0.90454 0.90603 0.89873 0.88034 0.87987 0.95585 0.95999 0.92569 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.08 -0.57 5.88 -104.60 -0.62 -1.19 16 3 C -0.11 -0.87 9.69 -39.60 -0.38 -1.25 16 4 C -0.10 -1.07 8.72 -39.40 -0.34 -1.42 16 5 C 0.12 1.22 6.44 -83.59 -0.54 0.68 16 6 N -0.67 -6.47 5.28 -9.80 -0.05 -6.52 16 7 C 0.52 6.44 6.99 -10.98 -0.08 6.36 16 8 O -0.49 -7.58 13.67 -14.06 -0.19 -7.77 16 9 C 0.07 0.86 2.98 -27.88 -0.08 0.77 16 10 H 0.11 1.35 7.16 -51.93 -0.37 0.98 16 11 C -0.17 -1.63 9.49 37.16 0.35 -1.28 16 12 O -0.33 -5.36 9.42 -45.89 -0.43 -5.79 16 13 C 0.46 8.35 7.93 36.00 0.29 8.64 16 14 O -0.51 -10.16 15.20 -18.75 -0.29 -10.45 16 15 C -0.09 -1.82 5.75 -27.88 -0.16 -1.98 16 16 C 0.00 -0.03 3.33 -27.88 -0.09 -0.13 16 17 C -0.53 -14.79 9.66 -34.44 -0.33 -15.13 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 21 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 25 C 0.07 0.64 7.31 -39.25 -0.29 0.35 16 26 F -0.14 -1.28 16.81 2.25 0.04 -1.24 16 27 C -0.13 -1.03 9.67 -39.55 -0.38 -1.41 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.16 1.89 5.78 -52.49 -0.30 1.58 16 33 H 0.42 2.92 8.04 -40.82 -0.33 2.59 16 34 H 0.08 0.52 7.75 -51.93 -0.40 0.11 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 40 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -34.02 364.58 -7.27 -41.30 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.55 Total: -0.44 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.39 Total: -5.16 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.72 Total: -33.20 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.91 Total: -24.02 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.02 -7.27 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.171 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds