Wall clock time and date at job start Tue Mar 31 2020 14:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.92287 * 2 1 4 4 C 1.38144 * 120.11406 * 179.76837 * 3 2 1 5 5 C 1.38812 * 119.95117 * 0.50448 * 4 3 2 6 6 N 1.40042 * 120.07848 * 179.77144 * 5 4 3 7 7 C 1.34778 * 119.99628 * 335.22896 * 6 5 4 8 8 O 1.21287 * 120.00599 * 354.59205 * 7 6 5 9 9 C 1.50706 * 119.99604 * 174.58608 * 7 6 5 10 10 H 1.08991 * 109.47388 * 305.00323 * 9 7 6 11 11 C 1.53000 * 109.47077 * 65.00404 * 9 7 6 12 12 O 1.45200 * 109.46894 * 184.99967 * 9 7 6 13 13 C 1.34229 * 116.99685 * 150.00082 * 12 9 7 14 14 O 1.20827 * 120.00232 * 0.02562 * 13 12 9 15 15 C 1.50698 * 120.00017 * 180.02562 * 13 12 9 16 16 C 1.53002 * 109.47491 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47491 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00022 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00731 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99716 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46974 * 90.00003 * 21 19 17 23 23 H 1.48495 * 109.47270 * 209.99888 * 21 19 17 24 24 H 1.48497 * 109.47320 * 330.00179 * 21 19 17 25 25 C 1.39056 * 119.84299 * 359.49703 * 5 4 3 26 26 F 1.35097 * 120.05200 * 180.27685 * 25 5 4 27 27 C 1.38260 * 119.92130 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46934 * 269.98514 * 1 2 3 29 29 H 1.09006 * 109.46774 * 29.97676 * 1 2 3 30 30 H 1.08993 * 109.47166 * 149.98322 * 1 2 3 31 31 H 1.07998 * 119.94233 * 0.03701 * 3 2 1 32 32 H 1.07999 * 120.02607 * 180.24997 * 4 3 2 33 33 H 0.96998 * 120.00313 * 155.51275 * 6 5 4 34 34 H 1.09002 * 109.47069 * 300.00094 * 11 9 7 35 35 H 1.09005 * 109.46956 * 59.99713 * 11 9 7 36 36 H 1.08997 * 109.47513 * 179.97438 * 11 9 7 37 37 H 1.09003 * 109.47406 * 300.00191 * 15 13 12 38 38 H 1.08998 * 109.47354 * 60.00108 * 15 13 12 39 39 H 1.09001 * 109.46612 * 299.99911 * 16 15 13 40 40 H 1.08998 * 109.46847 * 59.99659 * 16 15 13 41 41 H 0.96997 * 120.00310 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.98008 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5782 1.2031 0.0048 5 6 4.2753 0.0027 -0.0009 6 7 5.6757 0.0043 -0.0009 7 6 6.3484 1.0673 -0.4848 8 8 5.7450 1.9793 -1.0095 9 6 7.8503 1.1227 -0.3739 10 1 8.1426 0.9953 0.6683 11 6 8.4655 0.0036 -1.2166 12 8 8.3241 2.4078 -0.8560 13 6 9.4493 2.8885 -0.3040 14 8 10.0196 2.2562 0.5532 15 6 10.0011 4.2168 -0.7534 16 6 11.2795 4.5285 0.0274 17 6 11.8310 5.8571 -0.4216 18 1 11.3206 6.4229 -1.1869 19 6 12.9867 6.3510 0.1454 20 7 13.4678 7.5107 -0.2460 21 14 13.8685 5.3734 1.4707 22 1 14.8609 4.4668 0.8393 23 1 14.5659 6.3059 2.3922 24 1 12.8797 4.5703 2.2339 25 6 3.5798 -1.2014 -0.0009 26 9 4.2539 -2.3721 -0.0008 27 6 2.1967 -1.1983 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6546 2.1325 0.0006 32 1 4.1155 2.1400 0.0089 33 1 6.1616 -0.7612 0.3437 34 1 8.1098 -0.9611 -0.8548 35 1 8.1732 0.1311 -2.2589 36 1 9.5518 0.0439 -1.1368 37 1 10.2277 4.1745 -1.8188 38 1 9.2633 4.9978 -0.5696 39 1 11.0533 4.5708 1.0928 40 1 12.0172 3.7475 -0.1568 41 1 14.2806 7.8583 0.1532 42 1 1.6550 -2.1327 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:52 Heat of formation + Delta-G solvation = -168.064769 kcal Electronic energy + Delta-G solvation = -26198.145791 eV Core-core repulsion = 22056.877306 eV Total energy + Delta-G solvation = -4141.268485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.01365 -42.20555 -41.33852 -39.71780 -37.80398 -36.38452 -35.65301 -33.88427 -33.29795 -32.01845 -31.61648 -28.49913 -27.75553 -25.84013 -24.36887 -23.81825 -22.67511 -21.63110 -21.40219 -19.64489 -19.49586 -18.56406 -18.24921 -17.90774 -17.53066 -17.25056 -16.99405 -16.62269 -16.35839 -16.23030 -15.65516 -15.28812 -15.05002 -14.90507 -14.82508 -14.45841 -14.40341 -14.36037 -13.98856 -13.51178 -13.39549 -13.24847 -12.96749 -12.96025 -12.84332 -12.70733 -12.42200 -12.28070 -12.05467 -11.99323 -11.80839 -11.56940 -11.54496 -11.42690 -10.92891 -10.79066 -9.90956 -9.12561 -8.31706 -6.36580 -0.06324 0.14314 1.00412 1.13102 1.20575 1.35101 1.37178 1.50503 1.99740 2.34624 2.53531 3.03463 3.05612 3.16282 3.60123 3.65289 3.72177 3.79595 3.88152 4.14207 4.23412 4.26391 4.35616 4.35844 4.50770 4.54298 4.66410 4.80354 4.88387 4.90201 4.97742 4.99922 5.02691 5.16929 5.23956 5.28098 5.31900 5.34910 5.52077 5.57287 5.86942 6.00772 6.20831 6.61802 6.70837 6.74139 7.28422 8.83894 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026967 B = 0.002173 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.037883 B =12879.964439 C =13451.244584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.109 4.109 4 C -0.121 4.121 5 C 0.096 3.904 6 N -0.652 5.652 7 C 0.525 3.475 8 O -0.527 6.527 9 C 0.063 3.937 10 H 0.122 0.878 11 C -0.162 4.162 12 O -0.339 6.339 13 C 0.473 3.527 14 O -0.528 6.528 15 C -0.092 4.092 16 C 0.004 3.996 17 C -0.534 4.534 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.943 5.943 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.256 1.256 25 C 0.064 3.936 26 F -0.139 7.139 27 C -0.133 4.133 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.428 0.572 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.601 -23.110 1.426 35.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.141 4.141 5 C 0.001 3.999 6 N -0.299 5.299 7 C 0.312 3.688 8 O -0.402 6.402 9 C 0.005 3.995 10 H 0.140 0.860 11 C -0.219 4.219 12 O -0.256 6.256 13 C 0.318 3.682 14 O -0.417 6.417 15 C -0.130 4.130 16 C -0.034 4.034 17 C -0.572 4.572 18 H 0.067 0.933 19 C -0.185 4.185 20 N -0.583 5.583 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.179 1.179 25 C 0.042 3.958 26 F -0.118 7.118 27 C -0.152 4.152 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.631 -22.570 1.337 34.935 hybrid contribution 1.378 -0.433 0.669 1.592 sum -25.253 -23.003 2.006 34.218 Atomic orbital electron populations 1.20874 0.87988 1.04282 1.03744 1.20126 0.98168 0.91407 0.97685 1.21316 0.92671 0.99512 0.99248 1.21366 0.95376 0.97065 1.00339 1.17894 0.82772 0.93767 1.05459 1.43102 1.04463 1.20712 1.61618 1.20442 0.89274 0.81920 0.77144 1.90711 1.69819 1.37787 1.41870 1.22606 0.90030 0.83810 1.03097 0.86036 1.22213 1.02523 0.96589 1.00591 1.86670 1.41112 1.36212 1.61576 1.24390 0.77405 0.88104 0.78320 1.90603 1.59227 1.60220 1.31671 1.21366 0.98611 0.89550 1.03440 1.19325 0.92843 0.95316 0.95901 1.21336 1.09429 1.04095 1.22302 0.93310 1.25846 0.97935 0.95782 0.98980 1.70026 1.23063 1.20445 1.44763 0.85778 0.79196 0.78860 0.79594 1.19085 1.20582 1.17947 1.17453 0.90873 0.79165 1.08267 1.91477 1.80448 1.45436 1.94389 1.21177 0.90648 1.00814 1.02518 0.89592 0.90297 0.89991 0.83203 0.84693 0.73283 0.86936 0.90691 0.90558 0.86729 0.87197 0.96245 0.96050 0.92291 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 71.24 0.71 0.05 16 2 C -0.07 -0.89 5.88 -19.85 -0.12 -1.00 16 3 C -0.11 -1.69 9.69 22.26 0.22 -1.47 16 4 C -0.12 -2.57 8.72 22.38 0.20 -2.37 16 5 C 0.10 1.93 6.44 38.16 0.25 2.17 16 6 N -0.65 -12.14 5.28 -303.31 -1.60 -13.74 16 7 C 0.53 12.82 6.99 87.66 0.61 13.44 16 8 O -0.53 -16.73 13.67 15.70 0.21 -16.51 16 9 C 0.06 1.51 2.98 29.85 0.09 1.60 16 10 H 0.12 2.75 7.16 -2.39 -0.02 2.73 16 11 C -0.16 -2.89 9.49 71.98 0.68 -2.21 16 12 O -0.34 -10.75 9.42 -45.07 -0.42 -11.18 16 13 C 0.47 16.85 7.93 71.24 0.56 17.42 16 14 O -0.53 -20.57 15.20 21.96 0.33 -20.24 16 15 C -0.09 -3.55 5.75 29.85 0.17 -3.38 16 16 C 0.00 0.18 3.33 29.85 0.10 0.28 16 17 C -0.53 -30.35 9.66 25.60 0.25 -30.11 16 18 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 19 C 0.01 0.73 5.47 84.65 0.46 1.19 16 20 N -0.94 -58.56 13.96 21.44 0.30 -58.26 16 21 Si 0.94 45.15 27.47 68.60 1.88 47.04 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.26 -11.89 6.54 99.48 0.65 -11.24 16 25 C 0.06 1.09 7.31 22.48 0.16 1.25 16 26 F -0.14 -2.30 16.81 44.97 0.76 -1.55 16 27 C -0.13 -1.72 9.67 22.29 0.22 -1.50 16 28 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.38 8.08 -2.38 -0.02 0.36 16 30 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.14 3.45 5.78 -2.91 -0.02 3.43 16 33 H 0.43 5.36 8.04 -92.71 -0.75 4.62 16 34 H 0.11 1.19 7.75 -2.39 -0.02 1.17 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 38 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 39 H 0.02 0.94 7.15 -2.39 -0.02 0.93 16 40 H 0.02 1.01 7.53 -2.39 -0.02 1.00 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -74.07 364.58 6.28 -67.79 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.26 Total: 11.30 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 4.56 Total: -4.64 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.30 Total: -72.01 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: 0.12 Total: -47.93 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.76 Total: -1.55 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -74.07 6.28 -67.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.278 kcal (2) G-P(sol) polarization free energy of solvation -74.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds