Wall clock time and date at job start Tue Mar 31 2020 14:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.92433 * 2 1 4 4 C 1.38138 * 120.11601 * 179.97438 * 3 2 1 5 5 C 1.38809 * 119.95178 * 359.97438 * 4 3 2 6 6 N 1.40047 * 120.07943 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99738 * 24.80371 * 6 5 4 8 8 O 1.21291 * 119.99958 * 5.53621 * 7 6 5 9 9 C 1.50701 * 119.99919 * 185.52919 * 7 6 5 10 10 H 1.09003 * 109.46611 * 55.00244 * 9 7 6 11 11 C 1.52994 * 109.47316 * 295.00396 * 9 7 6 12 12 O 1.45196 * 109.47007 * 175.00275 * 9 7 6 13 13 C 1.34229 * 116.99886 * 210.00529 * 12 9 7 14 14 O 1.20817 * 120.00177 * 359.97438 * 13 12 9 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 9 16 16 C 1.52990 * 109.47526 * 179.97438 * 15 13 12 17 17 C 1.50692 * 109.47624 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99933 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47131 * 59.99904 * 21 19 17 23 23 H 1.48498 * 109.46805 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47232 * 299.99754 * 21 19 17 25 25 C 1.39051 * 119.84518 * 0.02562 * 5 4 3 26 26 F 1.35107 * 120.05570 * 179.97438 * 25 5 4 27 27 C 1.38265 * 119.92047 * 180.20523 * 2 1 3 28 28 H 1.09004 * 109.47161 * 90.00400 * 1 2 3 29 29 H 1.09000 * 109.47352 * 209.99638 * 1 2 3 30 30 H 1.08994 * 109.47286 * 330.00425 * 1 2 3 31 31 H 1.08006 * 119.93730 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.02513 * 179.97438 * 4 3 2 33 33 H 0.96992 * 120.00486 * 204.80816 * 6 5 4 34 34 H 1.09003 * 109.47066 * 300.00063 * 11 9 7 35 35 H 1.09000 * 109.46798 * 59.99939 * 11 9 7 36 36 H 1.08995 * 109.47073 * 179.97438 * 11 9 7 37 37 H 1.09003 * 109.46796 * 300.00055 * 15 13 12 38 38 H 1.09009 * 109.46958 * 59.99400 * 15 13 12 39 39 H 1.09000 * 109.47180 * 300.00481 * 16 15 13 40 40 H 1.09009 * 109.47116 * 59.99957 * 16 15 13 41 41 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 42 42 H 1.07996 * 119.98140 * 0.04180 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5782 1.2031 0.0005 5 6 4.2752 0.0027 0.0016 6 7 5.6757 0.0043 0.0016 7 6 6.3484 1.0651 0.4904 8 8 5.7451 1.9736 1.0211 9 6 7.8501 1.1222 0.3774 10 1 8.1408 1.0008 -0.6661 11 6 8.4674 -0.0011 1.2128 12 8 8.3236 2.4049 0.8658 13 6 9.4475 2.8896 0.3147 14 8 10.0170 2.2625 -0.5469 15 6 9.9998 4.2153 0.7714 16 6 11.2764 4.5325 -0.0098 17 6 11.8283 5.8584 0.4464 18 1 11.3191 6.4192 1.2163 19 6 12.9827 6.3563 -0.1197 20 7 13.6019 5.6742 -1.0583 21 14 13.6671 7.9996 0.4464 22 1 13.9787 7.9329 1.8968 23 1 14.9062 8.3074 -0.3120 24 1 12.6609 9.0647 0.2047 25 6 3.5797 -1.2014 0.0016 26 9 4.2539 -2.3722 0.0021 27 6 2.1966 -1.1984 -0.0043 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6545 2.1325 -0.0004 32 1 4.1154 2.1399 0.0001 33 1 6.1616 -0.7579 -0.3501 34 1 8.1766 0.1203 2.2563 35 1 8.1119 -0.9640 0.8462 36 1 9.5535 0.0400 1.1308 37 1 9.2612 4.9971 0.5940 38 1 10.2284 4.1663 1.8361 39 1 12.0148 3.7506 0.1679 40 1 11.0482 4.5813 -1.0746 41 1 14.4143 6.0243 -1.4564 42 1 1.6551 -2.1327 -0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:55 Heat of formation + Delta-G solvation = -151.843007 kcal Electronic energy + Delta-G solvation = -26128.037769 eV Core-core repulsion = 21987.472712 eV Total energy + Delta-G solvation = -4140.565057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.28011 -41.10392 -40.05798 -38.86200 -36.35291 -35.46967 -33.63254 -32.82152 -31.46775 -30.94581 -30.88390 -27.10429 -26.23728 -24.76942 -23.58284 -22.57688 -21.76518 -20.60434 -19.89947 -18.73636 -17.76923 -17.31506 -17.12549 -16.59460 -16.27493 -16.03526 -15.98034 -15.52874 -15.21434 -14.67682 -14.49115 -14.31518 -14.07809 -14.00109 -13.77848 -13.58507 -13.12735 -12.69979 -12.56229 -12.44354 -12.33969 -12.21167 -12.17010 -11.85851 -11.66769 -11.24901 -10.95502 -10.81978 -10.71367 -10.66574 -10.07589 -10.05219 -9.93377 -9.60125 -9.21639 -9.20050 -8.39086 -8.38544 -6.03195 -4.08108 0.67359 0.84329 2.13845 2.15086 2.69600 3.16704 3.23515 3.32596 3.37127 3.39641 3.76906 4.10848 4.29265 4.43138 4.47587 4.62276 4.73922 4.79645 4.82808 5.06819 5.08226 5.14390 5.20036 5.32303 5.43699 5.48065 5.52132 5.58490 5.73846 5.80458 5.84017 5.98833 6.08934 6.14623 6.16643 6.50211 6.56662 6.81130 6.85386 7.63212 7.64086 7.69689 7.95423 8.15677 8.34164 8.98507 9.56037 11.07728 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.002079 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.051642 B =13466.168243 C =14182.227121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.105 4.105 4 C -0.102 4.102 5 C 0.119 3.881 6 N -0.667 5.667 7 C 0.522 3.478 8 O -0.490 6.490 9 C 0.069 3.931 10 H 0.114 0.886 11 C -0.166 4.166 12 O -0.336 6.336 13 C 0.459 3.541 14 O -0.503 6.503 15 C -0.102 4.102 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.069 3.931 26 F -0.138 7.138 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.157 0.843 33 H 0.416 0.584 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.884 -16.153 2.114 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.122 4.122 5 C 0.023 3.977 6 N -0.313 5.313 7 C 0.308 3.692 8 O -0.362 6.362 9 C 0.010 3.990 10 H 0.132 0.868 11 C -0.224 4.224 12 O -0.254 6.254 13 C 0.302 3.698 14 O -0.389 6.389 15 C -0.139 4.139 16 C -0.003 4.003 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.724 3.276 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C 0.047 3.953 26 F -0.117 7.117 27 C -0.153 4.153 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.867 -15.701 2.112 29.485 hybrid contribution 0.904 0.026 -0.053 0.906 sum -23.963 -15.675 2.060 28.708 Atomic orbital electron populations 1.20787 0.90321 1.03173 1.02666 1.19771 0.96562 0.92130 0.99607 1.21068 0.93430 0.98061 0.99856 1.21412 0.94272 0.97708 0.98798 1.17765 0.82816 0.93226 1.03851 1.43314 1.04322 1.21473 1.62237 1.20521 0.89499 0.81713 0.77429 1.90709 1.69278 1.36409 1.39773 1.22222 0.89634 0.85049 1.02133 0.86821 1.22173 1.03205 0.96030 1.00946 1.86744 1.42574 1.34235 1.61803 1.25005 0.76969 0.88720 0.79064 1.90628 1.58178 1.59690 1.30401 1.21815 1.00989 0.87908 1.03210 1.19026 0.88960 0.96919 0.95431 1.21113 1.09381 1.04452 1.21816 0.92288 1.25019 0.96767 0.97594 0.94932 1.69978 1.18510 1.38286 1.26031 0.86587 0.78341 0.83879 0.78766 1.20146 1.21263 1.20135 1.17347 0.90236 0.79653 1.08042 1.91484 1.80306 1.45559 1.94345 1.20822 0.91226 0.99523 1.03746 0.90813 0.91339 0.91066 0.84804 0.82558 0.74768 0.90701 0.90521 0.89828 0.88658 0.88675 0.95534 0.95567 0.92777 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.01 36.00 0.36 -0.17 16 2 C -0.08 -0.59 5.88 -104.60 -0.62 -1.21 16 3 C -0.11 -0.90 9.69 -39.60 -0.38 -1.28 16 4 C -0.10 -1.10 8.72 -39.41 -0.34 -1.45 16 5 C 0.12 1.27 6.44 -83.59 -0.54 0.73 16 6 N -0.67 -6.78 5.28 -9.80 -0.05 -6.83 16 7 C 0.52 6.72 6.99 -10.98 -0.08 6.64 16 8 O -0.49 -7.82 13.68 -14.06 -0.19 -8.01 16 9 C 0.07 0.91 2.98 -27.89 -0.08 0.82 16 10 H 0.11 1.45 7.16 -51.93 -0.37 1.08 16 11 C -0.17 -1.75 9.49 37.15 0.35 -1.39 16 12 O -0.34 -5.69 9.42 -45.89 -0.43 -6.12 16 13 C 0.46 8.87 7.93 36.01 0.29 9.15 16 14 O -0.50 -10.82 15.20 -18.74 -0.28 -11.11 16 15 C -0.10 -2.08 5.75 -27.89 -0.16 -2.24 16 16 C 0.03 0.88 4.26 -27.89 -0.12 0.76 16 17 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.07 0.66 7.31 -39.25 -0.29 0.37 16 26 F -0.14 -1.32 16.82 2.25 0.04 -1.28 16 27 C -0.13 -1.06 9.67 -39.54 -0.38 -1.44 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.16 1.94 5.79 -52.49 -0.30 1.63 16 33 H 0.42 3.12 8.05 -40.82 -0.33 2.79 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 39 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.03 0.74 8.10 -51.92 -0.42 0.32 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -33.86 368.21 -7.65 -41.51 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.59 Total: 0.14 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.40 Total: -4.15 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.68 Total: -32.91 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.91 Total: -25.24 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.86 -7.65 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.334 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds