Wall clock time and date at job start Tue Mar 31 2020 14:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.92433 * 2 1 4 4 C 1.38138 * 120.11601 * 179.97438 * 3 2 1 5 5 C 1.38809 * 119.95178 * 359.97438 * 4 3 2 6 6 N 1.40047 * 120.07943 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99738 * 24.80371 * 6 5 4 8 8 O 1.21291 * 119.99958 * 5.53621 * 7 6 5 9 9 C 1.50701 * 119.99919 * 185.52919 * 7 6 5 10 10 H 1.09003 * 109.46611 * 55.00244 * 9 7 6 11 11 C 1.52994 * 109.47316 * 295.00396 * 9 7 6 12 12 O 1.45196 * 109.47007 * 175.00275 * 9 7 6 13 13 C 1.34229 * 116.99886 * 210.00529 * 12 9 7 14 14 O 1.20817 * 120.00177 * 359.97438 * 13 12 9 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 9 16 16 C 1.52990 * 109.47526 * 179.97438 * 15 13 12 17 17 C 1.50692 * 109.47624 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99933 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47131 * 59.99904 * 21 19 17 23 23 H 1.48498 * 109.46805 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47232 * 299.99754 * 21 19 17 25 25 C 1.39051 * 119.84518 * 0.02562 * 5 4 3 26 26 F 1.35107 * 120.05570 * 179.97438 * 25 5 4 27 27 C 1.38265 * 119.92047 * 180.20523 * 2 1 3 28 28 H 1.09004 * 109.47161 * 90.00400 * 1 2 3 29 29 H 1.09000 * 109.47352 * 209.99638 * 1 2 3 30 30 H 1.08994 * 109.47286 * 330.00425 * 1 2 3 31 31 H 1.08006 * 119.93730 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.02513 * 179.97438 * 4 3 2 33 33 H 0.96992 * 120.00486 * 204.80816 * 6 5 4 34 34 H 1.09003 * 109.47066 * 300.00063 * 11 9 7 35 35 H 1.09000 * 109.46798 * 59.99939 * 11 9 7 36 36 H 1.08995 * 109.47073 * 179.97438 * 11 9 7 37 37 H 1.09003 * 109.46796 * 300.00055 * 15 13 12 38 38 H 1.09009 * 109.46958 * 59.99400 * 15 13 12 39 39 H 1.09000 * 109.47180 * 300.00481 * 16 15 13 40 40 H 1.09009 * 109.47116 * 59.99957 * 16 15 13 41 41 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 42 42 H 1.07996 * 119.98140 * 0.04180 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5782 1.2031 0.0005 5 6 4.2752 0.0027 0.0016 6 7 5.6757 0.0043 0.0016 7 6 6.3484 1.0651 0.4904 8 8 5.7451 1.9736 1.0211 9 6 7.8501 1.1222 0.3774 10 1 8.1408 1.0008 -0.6661 11 6 8.4674 -0.0011 1.2128 12 8 8.3236 2.4049 0.8658 13 6 9.4475 2.8896 0.3147 14 8 10.0170 2.2625 -0.5469 15 6 9.9998 4.2153 0.7714 16 6 11.2764 4.5325 -0.0098 17 6 11.8283 5.8584 0.4464 18 1 11.3191 6.4192 1.2163 19 6 12.9827 6.3563 -0.1197 20 7 13.6019 5.6742 -1.0583 21 14 13.6671 7.9996 0.4464 22 1 13.9787 7.9329 1.8968 23 1 14.9062 8.3074 -0.3120 24 1 12.6609 9.0647 0.2047 25 6 3.5797 -1.2014 0.0016 26 9 4.2539 -2.3722 0.0021 27 6 2.1966 -1.1984 -0.0043 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6545 2.1325 -0.0004 32 1 4.1154 2.1399 0.0001 33 1 6.1616 -0.7579 -0.3501 34 1 8.1766 0.1203 2.2563 35 1 8.1119 -0.9640 0.8462 36 1 9.5535 0.0400 1.1308 37 1 9.2612 4.9971 0.5940 38 1 10.2284 4.1663 1.8361 39 1 12.0148 3.7506 0.1679 40 1 11.0482 4.5813 -1.0746 41 1 14.4143 6.0243 -1.4564 42 1 1.6551 -2.1327 -0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:55 Heat of formation + Delta-G solvation = -171.013917 kcal Electronic energy + Delta-G solvation = -26128.869082 eV Core-core repulsion = 21987.472712 eV Total energy + Delta-G solvation = -4141.396370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.00863 -42.19580 -41.32374 -39.71344 -37.77620 -36.38017 -35.66672 -33.84857 -33.04837 -31.98864 -31.61424 -28.13554 -27.75202 -25.87621 -24.43352 -24.05133 -22.72770 -21.66521 -21.40905 -19.63823 -19.27435 -18.34657 -18.21039 -17.88745 -17.50350 -17.23914 -16.98337 -16.59851 -16.48773 -16.30480 -15.64943 -15.25404 -14.99445 -14.90624 -14.47512 -14.44181 -14.37640 -14.26918 -13.93533 -13.48924 -13.29621 -13.23253 -12.95881 -12.87092 -12.79403 -12.70367 -12.55380 -12.41470 -12.05829 -11.97423 -11.77537 -11.56654 -11.51645 -11.31869 -10.92421 -10.57085 -9.90763 -9.12554 -8.20385 -6.33881 -0.06146 0.14608 1.02029 1.14987 1.20827 1.43681 1.47284 1.55069 2.00682 2.43254 2.53707 3.06014 3.13337 3.16406 3.61119 3.65528 3.72534 3.82949 3.88576 4.14668 4.23758 4.35755 4.36169 4.41705 4.52947 4.54099 4.66807 4.85352 4.89196 4.90975 4.97071 5.00362 5.03034 5.21909 5.24394 5.32166 5.45854 5.52265 5.54242 5.79633 5.87233 6.00384 6.12681 6.66110 6.72634 6.83820 7.36070 8.91811 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.002079 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.051642 B =13466.168243 C =14182.227121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.108 4.108 4 C -0.121 4.121 5 C 0.096 3.904 6 N -0.652 5.652 7 C 0.527 3.473 8 O -0.526 6.526 9 C 0.062 3.938 10 H 0.118 0.882 11 C -0.161 4.161 12 O -0.339 6.339 13 C 0.469 3.531 14 O -0.531 6.531 15 C -0.095 4.095 16 C 0.040 3.960 17 C -0.547 4.547 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.264 1.264 25 C 0.064 3.936 26 F -0.139 7.139 27 C -0.133 4.133 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.428 0.572 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.117 0.883 39 H -0.005 1.005 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.065 -16.555 3.133 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.141 4.141 5 C 0.000 4.000 6 N -0.299 5.299 7 C 0.314 3.686 8 O -0.401 6.401 9 C 0.003 3.997 10 H 0.135 0.865 11 C -0.218 4.218 12 O -0.255 6.255 13 C 0.314 3.686 14 O -0.420 6.420 15 C -0.132 4.132 16 C 0.003 3.997 17 C -0.584 4.584 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.573 5.573 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.189 1.189 25 C 0.042 3.958 26 F -0.118 7.118 27 C -0.151 4.151 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.267 0.733 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.013 0.987 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.088 -16.144 3.139 31.690 hybrid contribution 1.428 0.039 -0.402 1.484 sum -25.660 -16.104 2.737 30.418 Atomic orbital electron populations 1.20872 0.87941 1.04302 1.03751 1.20131 0.98188 0.91387 0.97649 1.21315 0.92616 0.99536 0.99234 1.21359 0.95407 0.97025 1.00323 1.17908 0.82707 0.93823 1.05514 1.43104 1.04514 1.21001 1.61298 1.20385 0.89129 0.81892 0.77201 1.90702 1.69766 1.37861 1.41761 1.22586 0.90191 0.84017 1.02870 0.86470 1.22201 1.02338 0.96556 1.00749 1.86668 1.41219 1.36235 1.61387 1.24571 0.77320 0.88227 0.78455 1.90618 1.59259 1.60458 1.31687 1.21552 0.98907 0.89340 1.03417 1.18791 0.90886 0.95789 0.94214 1.21604 1.09687 1.05112 1.22020 0.90648 1.26072 0.97236 1.01874 0.94889 1.70139 1.19114 1.40506 1.27563 0.85378 0.77538 0.78701 0.78674 1.18785 1.21203 1.18886 1.17466 0.90889 0.79146 1.08251 1.91480 1.80471 1.45442 1.94389 1.21177 0.90601 1.00842 1.02527 0.89593 0.89986 0.90251 0.83127 0.84719 0.73325 0.90480 0.86924 0.90903 0.86962 0.86514 0.98687 0.98992 0.92711 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 71.24 0.71 0.03 16 2 C -0.07 -0.91 5.88 -19.85 -0.12 -1.03 16 3 C -0.11 -1.72 9.69 22.26 0.22 -1.51 16 4 C -0.12 -2.64 8.72 22.38 0.20 -2.44 16 5 C 0.10 2.00 6.44 38.16 0.25 2.25 16 6 N -0.65 -13.00 5.28 -303.31 -1.60 -14.60 16 7 C 0.53 13.64 6.99 87.66 0.61 14.25 16 8 O -0.53 -17.21 13.68 15.68 0.21 -17.00 16 9 C 0.06 1.63 2.98 29.85 0.09 1.71 16 10 H 0.12 3.02 7.16 -2.39 -0.02 3.01 16 11 C -0.16 -3.24 9.49 71.98 0.68 -2.55 16 12 O -0.34 -11.51 9.42 -45.07 -0.42 -11.93 16 13 C 0.47 18.45 7.93 71.24 0.56 19.01 16 14 O -0.53 -23.63 15.20 21.99 0.33 -23.29 16 15 C -0.09 -3.89 5.75 29.85 0.17 -3.72 16 16 C 0.04 2.18 4.26 29.84 0.13 2.31 16 17 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 19 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 20 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 21 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 C 0.06 1.14 7.31 22.48 0.16 1.30 16 26 F -0.14 -2.43 16.82 44.97 0.76 -1.68 16 27 C -0.13 -1.79 9.67 22.29 0.22 -1.57 16 28 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 0.32 8.09 -2.39 -0.02 0.30 16 30 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 31 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.14 3.53 5.79 -2.91 -0.02 3.51 16 33 H 0.43 6.01 8.05 -92.71 -0.75 5.26 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.42 7.76 -2.39 -0.02 1.40 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 38 H 0.12 4.28 8.14 -2.38 -0.02 4.26 16 39 H -0.01 -0.31 8.10 -2.39 -0.02 -0.33 16 40 H -0.01 -0.50 8.10 -2.38 -0.02 -0.52 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -75.35 368.21 6.47 -68.87 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.31 Total: 13.25 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.58 Total: -2.04 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.32 Total: -72.05 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: 0.12 Total: -52.22 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.76 Total: -1.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.35 6.47 -68.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.139 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds