Wall clock time and date at job start Tue Mar 31 2020 14:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38226 * 120.01790 * 2 1 4 4 C 1.38215 * 120.02562 * 179.97438 * 3 2 1 5 5 C 1.38271 * 120.05703 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.98890 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47550 * 90.00118 * 6 5 4 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 O 1.45202 * 109.46885 * 179.72354 * 10 8 7 12 12 C 1.34231 * 116.99541 * 179.97438 * 11 10 8 13 13 O 1.20819 * 120.00095 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99478 * 179.97438 * 12 11 10 15 15 C 1.53007 * 109.46885 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46885 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00307 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99433 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00494 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47192 * 89.99445 * 20 18 16 22 22 H 1.48497 * 109.47218 * 210.00011 * 20 18 16 23 23 H 1.48503 * 109.46942 * 329.99686 * 20 18 16 24 24 C 1.38181 * 120.02079 * 0.27295 * 5 4 3 25 25 C 1.38438 * 120.01093 * 179.97438 * 2 1 3 26 26 F 1.35102 * 120.02895 * 0.04346 * 25 2 1 27 27 H 1.09000 * 109.47157 * 89.99636 * 1 2 3 28 28 H 1.08995 * 109.46932 * 210.00429 * 1 2 3 29 29 H 1.09005 * 109.46384 * 330.00223 * 1 2 3 30 30 H 1.07999 * 119.98353 * 359.95351 * 3 2 1 31 31 H 1.08008 * 119.97353 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47333 * 329.99712 * 6 5 4 33 33 H 1.09002 * 109.47271 * 210.00146 * 6 5 4 34 34 H 0.97000 * 119.99484 * 359.97438 * 7 6 5 35 35 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 36 36 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 37 37 H 1.08993 * 109.47533 * 299.99525 * 14 12 11 38 38 H 1.08998 * 109.47062 * 60.00389 * 14 12 11 39 39 H 1.08998 * 109.46953 * 300.00547 * 15 14 12 40 40 H 1.09004 * 109.47027 * 59.99985 * 15 14 12 41 41 H 0.97004 * 119.99390 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.01080 * 179.72541 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1969 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2733 0.0004 0.0016 6 6 5.7803 0.0024 0.0028 7 7 6.2676 0.0036 1.3843 8 6 7.5925 0.0060 1.6316 9 8 8.3813 0.0066 0.7103 10 6 8.0938 0.0010 3.0528 11 8 9.5458 -0.0018 3.0538 12 6 10.1543 -0.0058 4.2502 13 8 9.4955 -0.0065 5.2630 14 6 11.6592 -0.0095 4.3301 15 6 12.0919 -0.0131 5.7977 16 6 13.5968 -0.0174 5.8776 17 1 14.1857 -0.0171 4.9723 18 6 14.2218 -0.0205 7.1066 19 7 15.5352 -0.0248 7.1763 20 14 13.2034 -0.0202 8.6725 21 1 12.9300 -1.4202 9.0855 22 1 13.9516 0.6765 9.7495 23 1 11.9188 0.6833 8.4273 24 6 3.5842 -1.1973 -0.0036 25 6 2.1994 -1.1988 0.0005 26 9 1.5247 -2.3693 0.0002 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3632 0.8901 0.5138 30 1 1.6585 2.1322 -0.0008 31 1 4.1201 2.1327 0.0001 32 1 6.1429 0.8925 -0.5112 33 1 6.1452 -0.8874 -0.5104 34 1 5.6367 0.0035 2.1211 35 1 7.7318 0.8903 3.5688 36 1 7.7284 -0.8897 3.5638 37 1 12.0472 -0.8993 3.8345 38 1 12.0513 0.8807 3.8383 39 1 11.7039 0.8769 6.2931 40 1 11.6997 -0.9030 6.2900 41 1 15.9749 -0.0267 8.0410 42 1 4.1255 -2.1319 -0.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:29 Heat of formation + Delta-G solvation = -176.999573 kcal Electronic energy + Delta-G solvation = -25118.776417 eV Core-core repulsion = 20977.120490 eV Total energy + Delta-G solvation = -4141.655927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94961 -41.74464 -40.86633 -40.03567 -37.62813 -36.28905 -35.62604 -33.85871 -33.44998 -31.59380 -30.85705 -29.06404 -27.92039 -25.52985 -23.90292 -23.71704 -22.11524 -21.85127 -21.46731 -19.42141 -18.90109 -18.45169 -17.97800 -17.77409 -17.57386 -17.20762 -16.74199 -16.68799 -16.39823 -16.30761 -16.18171 -15.27374 -15.00925 -14.85348 -14.70538 -14.52370 -14.30568 -14.01126 -13.94048 -13.80602 -13.60166 -13.29746 -13.14772 -12.91587 -12.86376 -12.46313 -12.24614 -12.03603 -12.02390 -11.88813 -11.77786 -11.54914 -11.41321 -11.13953 -10.77501 -10.29299 -9.93769 -9.62438 -8.30308 -6.35085 -0.02966 0.16277 1.15375 1.26414 1.36669 1.38464 1.38808 1.51954 2.24211 2.36193 2.64063 3.05083 3.15372 3.50934 3.58842 3.69869 3.86622 3.88181 4.03090 4.08269 4.09900 4.20500 4.33583 4.39268 4.43014 4.61348 4.63287 4.72322 4.78922 4.83050 5.02224 5.09331 5.16216 5.18444 5.22033 5.31401 5.35016 5.37680 5.42033 5.59287 5.86336 6.22449 6.31052 6.67550 6.76191 7.02811 7.29960 8.85366 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.001702 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.057313 B =16447.948034 C =16807.358107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C -0.093 4.093 4 C -0.100 4.100 5 C -0.088 4.088 6 C 0.165 3.835 7 N -0.706 5.706 8 C 0.523 3.477 9 O -0.561 6.561 10 C 0.038 3.962 11 O -0.346 6.346 12 C 0.474 3.526 13 O -0.531 6.531 14 C -0.093 4.093 15 C 0.003 3.997 16 C -0.535 4.535 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.254 1.254 24 C -0.135 4.135 25 C 0.069 3.931 26 F -0.149 7.149 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.418 0.582 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.268 0.732 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.361 2.361 -16.534 39.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.116 4.116 3 C -0.111 4.111 4 C -0.119 4.119 5 C -0.088 4.088 6 C 0.043 3.957 7 N -0.361 5.361 8 C 0.308 3.692 9 O -0.438 6.438 10 C -0.039 4.039 11 O -0.263 6.263 12 C 0.319 3.681 13 O -0.421 6.421 14 C -0.131 4.131 15 C -0.035 4.035 16 C -0.572 4.572 17 H 0.066 0.934 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.766 3.234 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.178 1.178 24 C -0.154 4.154 25 C 0.050 3.950 26 F -0.128 7.128 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.178 0.822 31 H 0.169 0.831 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.256 0.744 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -34.906 2.310 -16.808 38.811 hybrid contribution -0.313 -0.555 1.098 1.269 sum -35.219 1.755 -15.710 38.604 Atomic orbital electron populations 1.20828 0.88967 1.04084 1.03593 1.20345 0.98221 0.91910 1.01122 1.21266 0.93985 0.97742 0.98064 1.21446 0.94451 0.98210 0.97782 1.19528 0.94235 0.92880 1.02181 1.20200 0.88970 1.03858 0.82682 1.45725 1.05549 1.75096 1.09745 1.20170 0.82953 0.75980 0.90048 1.90765 1.56294 1.49783 1.46982 1.22909 0.78658 1.07046 0.95260 1.86594 1.22074 1.84125 1.33459 1.24302 0.92610 0.70804 0.80349 1.90612 1.67488 1.46877 1.37094 1.21354 0.84820 1.06381 1.00500 1.19332 0.94471 0.97410 0.92241 1.21358 0.91223 1.50952 0.93710 0.93361 1.25847 0.95839 0.94039 1.02760 1.70039 1.09854 1.52130 1.26349 0.85772 0.79522 0.79251 0.78853 1.19249 1.20568 1.17774 1.21169 0.92167 0.99947 1.02140 1.17778 0.90317 0.81260 1.05622 1.91467 1.80516 1.46635 1.94169 0.89928 0.91818 0.88965 0.82165 0.83101 0.89607 0.90663 0.74441 0.86071 0.86314 0.87046 0.86986 0.96015 0.96217 0.92324 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.84 71.24 0.70 -0.09 16 2 C -0.11 -1.15 5.89 -19.82 -0.12 -1.26 16 3 C -0.09 -0.62 9.70 22.26 0.22 -0.40 16 4 C -0.10 -0.72 9.70 22.27 0.22 -0.51 16 5 C -0.09 -0.86 5.25 -19.87 -0.10 -0.96 16 6 C 0.17 2.00 5.80 85.63 0.50 2.50 16 7 N -0.71 -9.14 5.55 -466.79 -2.59 -11.73 16 8 C 0.52 11.19 7.91 87.66 0.69 11.88 16 9 O -0.56 -17.41 16.50 15.76 0.26 -17.15 16 10 C 0.04 0.82 5.94 71.24 0.42 1.24 16 11 O -0.35 -10.76 9.76 -45.07 -0.44 -11.20 16 12 C 0.47 16.68 7.96 71.24 0.57 17.24 16 13 O -0.53 -20.51 15.73 21.98 0.35 -20.17 16 14 C -0.09 -3.57 5.75 29.85 0.17 -3.40 16 15 C 0.00 0.14 3.33 29.85 0.10 0.24 16 16 C -0.53 -30.41 9.66 25.60 0.25 -30.16 16 17 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 18 C 0.01 0.76 5.47 84.65 0.46 1.22 16 19 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 20 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 24 C -0.13 -1.61 9.68 22.32 0.22 -1.40 16 25 C 0.07 0.94 7.24 22.38 0.16 1.10 16 26 F -0.15 -2.48 16.48 44.97 0.74 -1.74 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.53 7.64 -2.39 -0.02 0.51 16 29 H 0.09 0.28 8.09 -2.38 -0.02 0.26 16 30 H 0.16 0.25 8.06 -2.91 -0.02 0.22 16 31 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 32 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 33 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.42 3.15 8.46 -92.71 -0.78 2.37 16 35 H 0.12 2.11 8.13 -2.38 -0.02 2.09 16 36 H 0.12 2.12 8.13 -2.39 -0.02 2.10 16 37 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 38 H 0.11 4.03 8.14 -2.39 -0.02 4.02 16 39 H 0.02 1.05 7.16 -2.39 -0.02 1.03 16 40 H 0.02 0.94 7.53 -2.38 -0.02 0.92 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -76.50 371.52 5.16 -71.34 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.21 Total: 4.77 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 4.45 Total: -2.75 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -2.29 Total: -70.04 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: 0.17 Total: -48.51 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.74 Total: -1.74 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -76.50 5.16 -71.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.658 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds