Wall clock time and date at job start Tue Mar 31 2020 13:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47461 * 240.00413 * 3 2 1 5 5 H 1.48499 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46964 * 120.00247 * 3 2 1 7 7 C 1.37871 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00253 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.42911 * 113.99808 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46963 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47123 * 64.99904 * 12 11 10 14 14 C 1.47439 * 111.00012 * 74.90207 * 13 12 11 15 15 C 1.54314 * 107.23776 * 123.25516 * 14 13 12 16 16 C 1.55259 * 103.08202 * 22.20241 * 15 14 13 17 17 C 1.47845 * 110.99979 * 195.74131 * 13 12 11 18 18 H 1.09001 * 110.37027 * 332.58017 * 17 13 12 19 19 C 1.52994 * 110.37364 * 94.80576 * 17 13 12 20 20 C 1.50706 * 109.47375 * 185.87016 * 19 17 13 21 21 O 1.21448 * 119.99499 * 355.43747 * 20 19 17 22 22 C 1.41235 * 120.00036 * 175.43385 * 20 19 17 23 23 C 1.37186 * 125.47904 * 180.02562 * 22 20 19 24 24 C 1.37196 * 113.24116 * 179.73640 * 23 22 20 25 25 C 1.34014 * 115.15162 * 0.02562 * 24 23 22 26 26 S 1.70611 * 110.99906 * 359.97438 * 25 24 23 27 27 H 0.96994 * 120.00552 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46597 * 60.00136 * 9 7 2 29 29 H 1.09001 * 109.47202 * 300.00255 * 9 7 2 30 30 H 1.08996 * 109.46875 * 59.99734 * 11 10 9 31 31 H 1.08998 * 109.46700 * 299.99867 * 11 10 9 32 32 H 1.08997 * 109.47232 * 304.99380 * 12 11 10 33 33 H 1.09006 * 109.46605 * 184.99835 * 12 11 10 34 34 H 1.09001 * 109.88633 * 242.66276 * 14 13 12 35 35 H 1.09008 * 109.88975 * 3.84829 * 14 13 12 36 36 H 1.08997 * 110.70765 * 140.66387 * 15 14 13 37 37 H 1.09000 * 110.70729 * 263.72607 * 15 14 13 38 38 H 1.09004 * 111.08860 * 206.38061 * 16 15 14 39 39 H 1.09004 * 110.94585 * 82.53487 * 16 15 14 40 40 H 1.08998 * 109.47075 * 65.87001 * 19 17 13 41 41 H 1.08998 * 109.47191 * 305.87155 * 19 17 13 42 42 H 1.07999 * 123.37637 * 359.75270 * 23 22 20 43 43 H 1.08001 * 122.42183 * 180.02562 * 24 23 22 44 44 H 1.08000 * 124.50497 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 8 2.1799 -3.5852 -0.0005 11 6 1.5654 -4.8754 -0.0011 12 6 2.6484 -5.9561 -0.0017 13 7 3.4086 -5.8882 1.2535 14 6 2.6277 -6.4422 2.3747 15 6 3.4680 -7.5744 3.0019 16 6 4.9149 -7.2235 2.5613 17 6 4.6769 -6.6404 1.1462 18 1 4.5808 -7.4438 0.4159 19 6 5.8212 -5.7023 0.7571 20 6 7.0708 -6.5086 0.5129 21 8 7.0707 -7.7056 0.7178 22 6 8.2418 -5.8721 0.0456 23 6 9.4366 -6.4941 -0.2140 24 6 10.4074 -5.6354 -0.6640 25 6 10.0294 -4.3542 -0.7715 26 16 8.4006 -4.1561 -0.3039 27 1 -0.4851 0.8399 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8897 30 1 0.9455 -4.9822 -0.8913 31 1 0.9450 -4.9827 0.8886 32 1 3.3218 -5.7951 -0.8435 33 1 2.1824 -6.9374 -0.0917 34 1 2.4405 -5.6652 3.1159 35 1 1.6827 -6.8420 2.0067 36 1 3.3816 -7.5620 4.0883 37 1 3.1673 -8.5435 2.6037 38 1 5.5385 -8.1164 2.5160 39 1 5.3533 -6.4763 3.2229 40 1 5.9991 -4.9920 1.5645 41 1 5.5547 -5.1612 -0.1508 42 1 9.5969 -7.5534 -0.0779 43 1 11.4042 -5.9680 -0.9137 44 1 10.6705 -3.5534 -1.1092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815072626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:57 Heat of formation + Delta-G solvation = -48.496690 kcal Electronic energy + Delta-G solvation = -24750.926521 eV Core-core repulsion = 21181.056073 eV Total energy + Delta-G solvation = -3569.870448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17723 -38.79682 -37.46966 -36.42165 -32.93595 -32.18266 -31.94318 -30.27115 -28.13099 -26.90597 -26.46417 -24.79565 -22.42752 -22.13393 -21.60653 -20.41981 -19.76127 -19.35975 -17.72802 -16.42648 -16.24726 -16.16973 -15.71317 -15.25229 -15.21113 -14.71876 -14.41986 -14.18101 -14.08189 -13.72416 -13.42553 -13.06242 -12.97717 -12.89812 -12.67156 -12.40348 -12.38139 -11.97574 -11.58798 -11.48048 -11.10777 -11.02905 -10.98236 -10.79154 -10.75736 -10.65121 -10.55064 -10.35155 -9.97768 -9.83838 -9.12911 -9.03947 -8.83465 -8.73305 -8.07726 -8.03965 -6.05446 -4.06356 0.08400 1.30590 1.70618 1.97616 2.77875 3.34835 3.37461 3.41172 3.75342 4.38469 4.43009 4.63581 4.69315 4.70352 4.92785 5.04651 5.05215 5.13038 5.16939 5.25376 5.30920 5.40508 5.44825 5.56379 5.66401 5.70946 5.76255 5.79414 5.91414 5.93234 6.00590 6.04939 6.07754 6.08303 6.14251 6.22603 6.30406 6.38769 7.17836 7.20225 7.32782 7.42900 7.51292 7.85796 8.23425 8.69370 9.08301 9.58222 11.06312 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009325 B = 0.003690 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.874856 B = 7587.113397 C =10091.444872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.380 6.380 11 C 0.070 3.930 12 C 0.056 3.944 13 N -0.512 5.512 14 C 0.044 3.956 15 C -0.142 4.142 16 C -0.122 4.122 17 C 0.087 3.913 18 H 0.058 0.942 19 C -0.155 4.155 20 C 0.426 3.574 21 O -0.456 6.456 22 C -0.308 4.308 23 C -0.051 4.051 24 C -0.161 4.161 25 C -0.233 4.233 26 S 0.255 5.745 27 H 0.263 0.737 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.712 -14.489 1.266 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.008 4.008 12 C -0.072 4.072 13 N -0.236 5.236 14 C -0.083 4.083 15 C -0.181 4.181 16 C -0.160 4.160 17 C -0.021 4.021 18 H 0.076 0.924 19 C -0.193 4.193 20 C 0.305 3.695 21 O -0.334 6.334 22 C -0.426 4.426 23 C -0.084 4.084 24 C -0.192 4.192 25 C -0.371 4.371 26 S 0.523 5.477 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 15.852 -13.138 1.533 20.646 hybrid contribution 0.930 -0.956 -0.415 1.397 sum 16.782 -14.093 1.117 21.944 Atomic orbital electron populations 1.69956 1.06104 1.27122 1.50859 1.24941 0.94937 0.99349 0.95326 0.86427 0.79335 0.82089 0.78797 1.20062 1.21256 1.20012 1.21023 0.94015 0.89369 1.50361 0.91577 1.20151 0.88862 0.83916 0.95025 1.87919 1.34647 1.12339 1.95019 1.22202 0.93755 0.86184 0.98661 1.22331 0.96347 0.96201 0.92338 1.63326 1.03437 1.52914 1.03896 1.22846 0.95537 0.95878 0.94075 1.22814 0.95667 0.98520 1.01055 1.22774 0.96553 1.01215 0.95433 1.22208 0.89520 0.93114 0.97282 0.92415 1.22013 0.92647 0.99488 1.05199 1.20186 0.87581 0.88647 0.73117 1.90551 1.85579 1.16364 1.40922 1.24293 1.01078 0.99465 1.17797 1.20993 0.90740 1.01351 0.95362 1.20032 1.01556 0.92398 1.05248 1.25644 1.02414 1.01837 1.07229 1.83619 1.03957 1.03568 1.56531 0.92711 0.98134 0.97987 0.94525 0.94678 0.90503 0.94098 0.90255 0.92847 0.90935 0.91829 0.90210 0.90945 0.87344 0.87764 0.83194 0.83990 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.19 5.41 5.69 36.01 0.20 5.61 16 10 O -0.38 -9.23 10.27 -35.23 -0.36 -9.59 16 11 C 0.07 1.33 6.11 37.16 0.23 1.56 16 12 C 0.06 0.87 4.96 -3.83 -0.02 0.85 16 13 N -0.51 -7.84 4.72 -223.39 -1.06 -8.89 16 14 C 0.04 0.60 6.22 -2.84 -0.02 0.58 16 15 C -0.14 -1.60 6.94 -24.85 -0.17 -1.77 16 16 C -0.12 -1.47 5.87 -24.53 -0.14 -1.62 16 17 C 0.09 1.17 1.97 -66.19 -0.13 1.04 16 18 H 0.06 0.80 7.61 -51.93 -0.40 0.40 16 19 C -0.16 -1.99 4.82 -27.88 -0.13 -2.13 16 20 C 0.43 5.32 6.78 -33.17 -0.22 5.10 16 21 O -0.46 -6.51 15.00 5.41 0.08 -6.43 16 22 C -0.31 -3.43 6.23 -38.83 -0.24 -3.67 16 23 C -0.05 -0.50 9.95 -40.34 -0.40 -0.90 16 24 C -0.16 -1.33 10.14 -41.45 -0.42 -1.75 16 25 C -0.23 -1.88 10.93 29.25 0.32 -1.56 16 26 S 0.25 2.47 22.42 -107.50 -2.41 0.06 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.66 7.42 -51.93 -0.39 0.27 16 32 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 33 H 0.04 0.55 7.80 -51.93 -0.41 0.14 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.69 7.17 -51.92 -0.37 0.32 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.97 7.22 -51.93 -0.37 0.59 16 39 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 40 H 0.11 1.37 8.01 -51.93 -0.42 0.95 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.15 1.36 8.02 -52.49 -0.42 0.94 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -32.81 376.51 -10.88 -43.70 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.95 Total: -2.37 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.58 Total: -12.54 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.32 Total: -35.33 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.28 Total: -16.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.41 Total: 0.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.81 -10.88 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815072626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.800 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds