Wall clock time and date at job start Tue Mar 31 2020 14:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38194 * 120.08909 * 2 1 4 4 F 1.35103 * 119.95603 * 359.97003 * 3 2 1 5 5 C 1.38562 * 120.09590 * 180.29672 * 3 2 1 6 6 C 1.38349 * 120.27688 * 359.67490 * 5 3 2 7 7 C 1.37932 * 120.17997 * 0.04472 * 6 5 3 8 8 C 1.39584 * 120.08951 * 179.71841 * 2 1 3 9 9 C 1.47738 * 120.13544 * 359.97438 * 8 2 1 10 10 O 1.21464 * 120.00264 * 353.53956 * 9 8 2 11 11 O 1.34709 * 119.99469 * 173.53426 * 9 8 2 12 12 C 1.45203 * 116.99608 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47546 * 29.99901 * 12 11 9 14 14 C 1.53005 * 109.47112 * 270.00121 * 12 11 9 15 15 C 1.50699 * 109.46981 * 150.00478 * 12 11 9 16 16 O 1.21275 * 120.00078 * 15.66510 * 15 12 11 17 17 N 1.34774 * 119.99753 * 195.66841 * 15 12 11 18 18 C 1.46507 * 120.00099 * 5.05736 * 17 15 12 19 19 C 1.46506 * 119.99921 * 185.05659 * 17 15 12 20 20 C 1.50703 * 109.46843 * 90.00224 * 19 17 15 21 21 H 1.07996 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99479 * 180.02562 * 20 19 17 23 23 N 1.31515 * 120.00253 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46743 * 59.99768 * 24 22 20 26 26 H 1.48495 * 109.47016 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47088 * 300.00267 * 24 22 20 28 28 H 1.08996 * 109.47331 * 263.05614 * 1 2 3 29 29 H 1.09002 * 109.47085 * 23.05613 * 1 2 3 30 30 H 1.09002 * 109.46816 * 143.05417 * 1 2 3 31 31 H 1.08004 * 119.86055 * 179.69606 * 5 3 2 32 32 H 1.08001 * 119.90806 * 180.02562 * 6 5 3 33 33 H 1.07997 * 120.05094 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46906 * 296.69840 * 14 12 11 35 35 H 1.09001 * 109.47116 * 56.69479 * 14 12 11 36 36 H 1.08991 * 109.47123 * 176.69264 * 14 12 11 37 37 H 1.09000 * 109.47163 * 91.58053 * 18 17 15 38 38 H 1.08999 * 109.46957 * 211.57620 * 18 17 15 39 39 H 1.09000 * 109.46891 * 331.57657 * 18 17 15 40 40 H 1.09004 * 109.47004 * 209.99712 * 19 17 15 41 41 H 1.08995 * 109.46797 * 330.00021 * 19 17 15 42 42 H 0.97003 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3663 -0.0006 5 6 3.5855 1.1959 -0.0062 6 6 4.2832 0.0012 -0.0057 7 6 3.6032 -1.1989 0.0002 8 6 2.2068 -1.2077 0.0059 9 6 1.4732 -2.4900 0.0128 10 8 0.2644 -2.4976 0.1317 11 8 2.1449 -3.6509 -0.1129 12 6 1.3593 -4.8720 -0.0983 13 1 0.3691 -4.6719 -0.5076 14 6 1.2243 -5.3745 1.3406 15 6 2.0459 -5.9210 -0.9344 16 8 3.2078 -5.7790 -1.2513 17 7 1.3686 -7.0171 -1.3299 18 6 -0.0629 -7.1370 -1.0424 19 6 2.0640 -8.0886 -2.0473 20 6 2.6036 -9.0882 -1.0570 21 1 2.4448 -8.9400 0.0009 22 6 3.3008 -10.1915 -1.5017 23 7 3.4945 -10.3717 -2.7899 24 14 3.9703 -11.4303 -0.2741 25 1 2.8482 -12.0067 0.5094 26 1 4.6750 -12.5164 -1.0014 27 1 4.9193 -10.7527 0.6454 28 1 -0.3634 -0.1242 1.0201 29 1 -0.3633 0.9456 -0.4025 30 1 -0.3633 -0.8213 -0.6177 31 1 4.1231 2.1326 -0.0112 32 1 5.3631 0.0083 -0.0101 33 1 4.1499 -2.1302 0.0002 34 1 2.2097 -5.6302 1.7300 35 1 0.7811 -4.5933 1.9582 36 1 0.5860 -6.2577 1.3585 37 1 -0.6362 -6.7349 -1.8777 38 1 -0.3180 -8.1869 -0.8987 39 1 -0.2997 -6.5784 -0.1368 40 1 1.3671 -8.5856 -2.7222 41 1 2.8877 -7.6657 -2.6223 42 1 3.9853 -11.1477 -3.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817244808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:42 Heat of formation + Delta-G solvation = -132.041092 kcal Electronic energy + Delta-G solvation = -27065.147445 eV Core-core repulsion = 22925.441064 eV Total energy + Delta-G solvation = -4139.706381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.24021 -40.97976 -39.44895 -38.56822 -36.53240 -34.92644 -33.06787 -32.90294 -31.97366 -30.93598 -27.82731 -27.53833 -26.11624 -25.04805 -24.09044 -22.69903 -21.91975 -21.00774 -18.89180 -18.60867 -17.22222 -16.79182 -16.59428 -16.50614 -16.18729 -16.10218 -15.83138 -15.67645 -15.13248 -14.66033 -14.38755 -13.90081 -13.83343 -13.59140 -13.32848 -13.20420 -12.85328 -12.67540 -12.37455 -12.29898 -12.23302 -12.15120 -12.09384 -11.76007 -11.66017 -11.42546 -11.26056 -10.95429 -10.77186 -10.59626 -10.30763 -10.20603 -9.70840 -9.43614 -9.00827 -8.96173 -8.47920 -7.75942 -6.09020 -4.14639 0.25458 0.78093 2.22732 2.32376 3.18969 3.27219 3.29046 3.33798 3.37109 3.75547 3.93332 4.30321 4.35205 4.40194 4.55061 4.60687 4.79872 4.87199 4.97447 5.06289 5.23612 5.25554 5.31636 5.45063 5.48443 5.55869 5.65924 5.69306 5.70802 5.83613 5.84979 5.90636 5.99974 6.07399 6.20794 6.33552 6.45270 6.95335 7.36545 7.42523 7.59926 7.86587 8.16240 8.25300 8.79662 8.94743 9.50550 10.99072 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024461 B = 0.002646 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.426288 B =10580.443667 C =11117.110490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.053 4.053 3 C 0.079 3.921 4 F -0.134 7.134 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.062 4.062 8 C -0.101 4.101 9 C 0.508 3.492 10 O -0.499 6.499 11 O -0.319 6.319 12 C 0.072 3.928 13 H 0.104 0.896 14 C -0.164 4.164 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.595 5.595 18 C 0.072 3.928 19 C 0.246 3.754 20 C -0.531 4.531 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 20.990 6.960 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C 0.060 3.940 4 F -0.112 7.112 5 C -0.133 4.133 6 C -0.129 4.129 7 C -0.080 4.080 8 C -0.102 4.102 9 C 0.353 3.647 10 O -0.389 6.389 11 O -0.235 6.235 12 C 0.013 3.987 13 H 0.122 0.878 14 C -0.221 4.221 15 C 0.294 3.706 16 O -0.396 6.396 17 N -0.329 5.329 18 C -0.072 4.072 19 C 0.127 3.873 20 C -0.570 4.570 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.699 20.907 6.661 22.440 hybrid contribution 0.132 -0.612 0.667 0.915 sum -4.567 20.295 7.329 22.056 Atomic orbital electron populations 1.21068 0.88792 1.03846 1.04245 1.20002 0.97890 0.90325 0.97189 1.17260 0.89953 0.80814 1.05961 1.91503 1.80352 1.45274 1.94112 1.21437 0.92092 1.00347 0.99471 1.21048 1.00930 0.90900 1.00041 1.21714 0.92671 0.99981 0.93629 1.18751 0.93578 0.89588 1.08288 1.21029 0.85878 0.84704 0.73106 1.90777 1.14789 1.87609 1.45705 1.86657 1.40492 1.13796 1.82511 1.22719 0.95592 0.81978 0.98390 0.87805 1.22165 1.04243 1.02378 0.93348 1.19729 0.87199 0.82561 0.81079 1.90694 1.16337 1.77125 1.55444 1.48078 1.09044 1.19287 1.56487 1.21858 0.81967 1.03529 0.99809 1.19362 0.92881 0.83097 0.91925 1.21382 1.35529 1.06641 0.93407 0.92392 1.24937 0.95760 0.97965 0.95353 1.69923 1.41038 1.29219 1.13036 0.86545 0.79197 0.80533 0.81073 1.20211 1.21133 1.20119 0.89940 0.91591 0.88293 0.84055 0.83866 0.83061 0.90592 0.91235 0.89457 0.93285 0.90237 0.92053 0.94611 0.93553 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.58 36.01 0.31 -0.99 16 2 C -0.05 -0.59 5.92 -104.13 -0.62 -1.21 16 3 C 0.08 0.79 7.24 -39.48 -0.29 0.51 16 4 F -0.13 -1.37 16.36 2.25 0.04 -1.33 16 5 C -0.11 -0.92 10.02 -39.42 -0.39 -1.32 16 6 C -0.11 -0.90 10.03 -39.65 -0.40 -1.29 16 7 C -0.06 -0.64 9.61 -39.17 -0.38 -1.02 16 8 C -0.10 -1.22 5.87 -104.99 -0.62 -1.84 16 9 C 0.51 7.23 7.80 34.61 0.27 7.50 16 10 O -0.50 -7.33 12.62 -19.24 -0.24 -7.58 16 11 O -0.32 -5.17 8.73 -47.05 -0.41 -5.58 16 12 C 0.07 1.16 2.13 -27.88 -0.06 1.10 16 13 H 0.10 1.53 6.23 -51.93 -0.32 1.20 16 14 C -0.16 -2.25 9.27 37.16 0.34 -1.91 16 15 C 0.51 10.70 6.96 -10.99 -0.08 10.62 16 16 O -0.52 -13.16 16.13 -13.56 -0.22 -13.38 16 17 N -0.60 -12.44 2.86 -182.95 -0.52 -12.96 16 18 C 0.07 1.11 9.96 59.85 0.60 1.71 16 19 C 0.25 6.33 5.21 -5.19 -0.03 6.30 16 20 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 21 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 24 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.61 7.45 -51.93 -0.39 0.22 16 30 H 0.10 1.16 5.92 -51.93 -0.31 0.85 16 31 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.15 1.61 7.62 -52.49 -0.40 1.21 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.10 6.26 -51.93 -0.33 0.78 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.06 0.77 4.58 -51.93 -0.24 0.54 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 42 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -33.18 360.67 -7.24 -40.42 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.28 Total: -0.78 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.75 Total: 4.79 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.21 Total: -38.40 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.87 Total: -26.54 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.18 -7.24 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817244808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.619 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds