Wall clock time and date at job start Tue Mar 31 2020 14:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38194 * 120.08909 * 2 1 4 4 F 1.35103 * 119.95603 * 359.97003 * 3 2 1 5 5 C 1.38562 * 120.09590 * 180.29672 * 3 2 1 6 6 C 1.38349 * 120.27688 * 359.67490 * 5 3 2 7 7 C 1.37932 * 120.17997 * 0.04472 * 6 5 3 8 8 C 1.39584 * 120.08951 * 179.71841 * 2 1 3 9 9 C 1.47738 * 120.13544 * 359.97438 * 8 2 1 10 10 O 1.21464 * 120.00264 * 353.53956 * 9 8 2 11 11 O 1.34709 * 119.99469 * 173.53426 * 9 8 2 12 12 C 1.45203 * 116.99608 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47546 * 29.99901 * 12 11 9 14 14 C 1.53005 * 109.47112 * 270.00121 * 12 11 9 15 15 C 1.50699 * 109.46981 * 150.00478 * 12 11 9 16 16 O 1.21275 * 120.00078 * 15.66510 * 15 12 11 17 17 N 1.34774 * 119.99753 * 195.66841 * 15 12 11 18 18 C 1.46507 * 120.00099 * 5.05736 * 17 15 12 19 19 C 1.46506 * 119.99921 * 185.05659 * 17 15 12 20 20 C 1.50703 * 109.46843 * 90.00224 * 19 17 15 21 21 H 1.07996 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99479 * 180.02562 * 20 19 17 23 23 N 1.31515 * 120.00253 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46743 * 59.99768 * 24 22 20 26 26 H 1.48495 * 109.47016 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47088 * 300.00267 * 24 22 20 28 28 H 1.08996 * 109.47331 * 263.05614 * 1 2 3 29 29 H 1.09002 * 109.47085 * 23.05613 * 1 2 3 30 30 H 1.09002 * 109.46816 * 143.05417 * 1 2 3 31 31 H 1.08004 * 119.86055 * 179.69606 * 5 3 2 32 32 H 1.08001 * 119.90806 * 180.02562 * 6 5 3 33 33 H 1.07997 * 120.05094 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46906 * 296.69840 * 14 12 11 35 35 H 1.09001 * 109.47116 * 56.69479 * 14 12 11 36 36 H 1.08991 * 109.47123 * 176.69264 * 14 12 11 37 37 H 1.09000 * 109.47163 * 91.58053 * 18 17 15 38 38 H 1.08999 * 109.46957 * 211.57620 * 18 17 15 39 39 H 1.09000 * 109.46891 * 331.57657 * 18 17 15 40 40 H 1.09004 * 109.47004 * 209.99712 * 19 17 15 41 41 H 1.08995 * 109.46797 * 330.00021 * 19 17 15 42 42 H 0.97003 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3663 -0.0006 5 6 3.5855 1.1959 -0.0062 6 6 4.2832 0.0012 -0.0057 7 6 3.6032 -1.1989 0.0002 8 6 2.2068 -1.2077 0.0059 9 6 1.4732 -2.4900 0.0128 10 8 0.2644 -2.4976 0.1317 11 8 2.1449 -3.6509 -0.1129 12 6 1.3593 -4.8720 -0.0983 13 1 0.3691 -4.6719 -0.5076 14 6 1.2243 -5.3745 1.3406 15 6 2.0459 -5.9210 -0.9344 16 8 3.2078 -5.7790 -1.2513 17 7 1.3686 -7.0171 -1.3299 18 6 -0.0629 -7.1370 -1.0424 19 6 2.0640 -8.0886 -2.0473 20 6 2.6036 -9.0882 -1.0570 21 1 2.4448 -8.9400 0.0009 22 6 3.3008 -10.1915 -1.5017 23 7 3.4945 -10.3717 -2.7899 24 14 3.9703 -11.4303 -0.2741 25 1 2.8482 -12.0067 0.5094 26 1 4.6750 -12.5164 -1.0014 27 1 4.9193 -10.7527 0.6454 28 1 -0.3634 -0.1242 1.0201 29 1 -0.3633 0.9456 -0.4025 30 1 -0.3633 -0.8213 -0.6177 31 1 4.1231 2.1326 -0.0112 32 1 5.3631 0.0083 -0.0101 33 1 4.1499 -2.1302 0.0002 34 1 2.2097 -5.6302 1.7300 35 1 0.7811 -4.5933 1.9582 36 1 0.5860 -6.2577 1.3585 37 1 -0.6362 -6.7349 -1.8777 38 1 -0.3180 -8.1869 -0.8987 39 1 -0.2997 -6.5784 -0.1368 40 1 1.3671 -8.5856 -2.7222 41 1 2.8877 -7.6657 -2.6223 42 1 3.9853 -11.1477 -3.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817244808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:41 Heat of formation + Delta-G solvation = -150.430669 kcal Electronic energy + Delta-G solvation = -27065.944877 eV Core-core repulsion = 22925.441064 eV Total energy + Delta-G solvation = -4140.503813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.00410 -42.10951 -40.79511 -39.67099 -37.72437 -36.69297 -34.86797 -33.84867 -33.28251 -31.87866 -29.70201 -28.34285 -27.58973 -26.24558 -25.49421 -24.14339 -22.84824 -22.06742 -20.41090 -19.62295 -18.69031 -18.37261 -17.96022 -17.59119 -17.27282 -17.05111 -16.82530 -16.72896 -16.62885 -16.21977 -16.01178 -15.01628 -14.81492 -14.64290 -14.37192 -14.28822 -14.19103 -13.99386 -13.65726 -13.57454 -13.47062 -13.34656 -13.11783 -13.05650 -12.97994 -12.85447 -12.64341 -12.51793 -12.36357 -12.19260 -11.96673 -11.73919 -11.33541 -10.64750 -10.63971 -10.20312 -9.77286 -9.53149 -8.22853 -6.37892 -0.57468 0.02540 1.11022 1.30332 1.38546 1.42659 1.49453 1.58980 2.28785 2.42291 2.46856 3.07431 3.11913 3.36286 3.39207 3.58404 3.70899 3.79882 3.81855 3.86880 4.16566 4.24722 4.42239 4.55436 4.57568 4.60416 4.64334 4.66042 4.80592 4.86663 4.93517 4.99815 5.04481 5.08356 5.11725 5.19102 5.20452 5.35660 5.50988 5.69935 5.77646 6.02991 6.45358 6.60057 6.70895 7.18507 7.35465 8.84620 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024461 B = 0.002646 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.426288 B =10580.443667 C =11117.110490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C 0.071 3.929 4 F -0.136 7.136 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.070 4.070 8 C -0.122 4.122 9 C 0.507 3.493 10 O -0.507 6.507 11 O -0.336 6.336 12 C 0.082 3.918 13 H 0.123 0.877 14 C -0.158 4.158 15 C 0.502 3.498 16 O -0.576 6.576 17 N -0.600 5.600 18 C 0.066 3.934 19 C 0.259 3.741 20 C -0.545 4.545 21 H 0.059 0.941 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.276 1.276 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.030 0.970 41 H 0.000 1.000 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 22.224 8.736 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C 0.052 3.948 4 F -0.114 7.114 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.088 4.088 8 C -0.123 4.123 9 C 0.353 3.647 10 O -0.398 6.398 11 O -0.252 6.252 12 C 0.024 3.976 13 H 0.141 0.859 14 C -0.215 4.215 15 C 0.289 3.711 16 O -0.456 6.456 17 N -0.332 5.332 18 C -0.076 4.076 19 C 0.138 3.862 20 C -0.584 4.584 21 H 0.077 0.923 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.183 1.183 26 H -0.205 1.205 27 H -0.201 1.201 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.192 0.808 32 H 0.193 0.807 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.018 0.982 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.104 22.155 8.455 24.257 hybrid contribution 0.247 -0.888 0.060 0.924 sum -4.858 21.267 8.515 23.417 Atomic orbital electron populations 1.21012 0.88754 1.03767 1.04078 1.20078 0.98155 0.90550 0.97671 1.17409 0.90787 0.80301 1.06351 1.91500 1.80567 1.45179 1.94175 1.21816 0.91275 1.01684 0.96986 1.21387 1.02426 0.89777 0.98269 1.21795 0.92152 1.00905 0.93996 1.18732 0.94251 0.88745 1.10586 1.21418 0.85990 0.84662 0.72633 1.90760 1.15050 1.87619 1.46325 1.86662 1.41208 1.14317 1.83029 1.22583 0.95232 0.80993 0.98824 0.85904 1.22174 1.04039 1.03638 0.91662 1.20588 0.86741 0.83181 0.80616 1.90654 1.18938 1.78469 1.57544 1.48060 1.11139 1.18245 1.55755 1.22174 0.78651 1.04429 1.02348 1.18856 0.91763 0.83849 0.91727 1.21672 1.35837 1.07191 0.93661 0.92278 1.25870 0.95903 1.00062 0.97252 1.70049 1.41753 1.29999 1.15014 0.85455 0.78828 0.77890 0.78584 1.18342 1.20545 1.20146 0.89784 0.90529 0.89777 0.80796 0.80704 0.83868 0.91925 0.88986 0.87981 0.91018 0.90256 0.88724 0.95251 0.98152 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.58 71.24 0.61 -1.84 16 2 C -0.06 -1.36 5.92 -19.55 -0.12 -1.47 16 3 C 0.07 1.28 7.24 22.34 0.16 1.44 16 4 F -0.14 -2.51 16.36 44.97 0.74 -1.77 16 5 C -0.10 -1.29 10.02 22.37 0.22 -1.06 16 6 C -0.10 -1.36 10.03 22.22 0.22 -1.14 16 7 C -0.07 -1.41 9.61 22.54 0.22 -1.20 16 8 C -0.12 -2.91 5.87 -20.10 -0.12 -3.03 16 9 C 0.51 14.36 7.80 70.33 0.55 14.91 16 10 O -0.51 -14.60 12.62 19.95 0.25 -14.35 16 11 O -0.34 -10.98 8.73 -49.95 -0.44 -11.41 16 12 C 0.08 2.60 2.13 29.85 0.06 2.67 16 13 H 0.12 3.42 6.23 -2.39 -0.01 3.40 16 14 C -0.16 -4.09 9.27 71.98 0.67 -3.43 16 15 C 0.50 21.52 6.96 87.66 0.61 22.13 16 16 O -0.58 -30.63 16.13 15.27 0.25 -30.38 16 17 N -0.60 -25.39 2.86 -851.11 -2.43 -27.82 16 18 C 0.07 1.93 9.96 127.77 1.27 3.20 16 19 C 0.26 13.85 5.21 85.63 0.45 14.29 16 20 C -0.55 -30.75 9.39 25.60 0.24 -30.51 16 21 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 22 C 0.01 0.47 5.46 84.65 0.46 0.93 16 23 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 24 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.35 7.45 -2.39 -0.02 1.33 16 30 H 0.08 1.97 5.92 -2.39 -0.01 1.95 16 31 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.14 3.08 7.62 -2.91 -0.02 3.06 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.10 2.31 6.26 -2.39 -0.01 2.30 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 39 H 0.09 2.14 4.58 -2.39 -0.01 2.12 16 40 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 41 H 0.00 0.02 7.36 -2.39 -0.02 0.00 16 42 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -75.08 360.67 7.24 -67.84 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.05 Total: 11.37 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 5.51 Total: 15.89 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.15 Total: -83.18 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: 0.06 Total: -56.15 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.74 Total: -1.77 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -75.08 7.24 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817244808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.588 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds