Wall clock time and date at job start Tue Mar 31 2020 14:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38199 * 120.09124 * 2 1 4 4 F 1.35107 * 119.95182 * 359.97438 * 3 2 1 5 5 C 1.38555 * 120.09619 * 180.29568 * 3 2 1 6 6 C 1.38341 * 120.27924 * 359.68495 * 5 3 2 7 7 C 1.37931 * 120.18098 * 0.03658 * 6 5 3 8 8 C 1.39577 * 120.08854 * 179.72780 * 2 1 3 9 9 C 1.47738 * 120.14063 * 359.97438 * 8 2 1 10 10 O 1.21473 * 119.99723 * 353.51798 * 9 8 2 11 11 O 1.34705 * 120.00186 * 173.51859 * 9 8 2 12 12 C 1.45206 * 116.99957 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46711 * 329.99490 * 12 11 9 14 14 C 1.52998 * 109.46771 * 89.99575 * 12 11 9 15 15 C 1.50694 * 109.46962 * 209.99578 * 12 11 9 16 16 O 1.21286 * 120.00131 * 355.00233 * 15 12 11 17 17 N 1.34776 * 119.99845 * 174.99843 * 15 12 11 18 18 C 1.46497 * 119.99897 * 0.02562 * 17 15 12 19 19 C 1.46500 * 120.00173 * 180.02562 * 17 15 12 20 20 C 1.50698 * 109.47600 * 89.99611 * 19 17 15 21 21 H 1.07999 * 119.99832 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00130 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99881 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00352 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47316 * 89.99592 * 24 22 20 26 26 H 1.48503 * 109.47467 * 210.00249 * 24 22 20 27 27 H 1.48507 * 109.46793 * 329.99842 * 24 22 20 28 28 H 1.08996 * 109.47506 * 263.70326 * 1 2 3 29 29 H 1.09009 * 109.47059 * 23.70408 * 1 2 3 30 30 H 1.09004 * 109.47390 * 143.69738 * 1 2 3 31 31 H 1.08004 * 119.85750 * 179.69743 * 5 3 2 32 32 H 1.08002 * 119.91283 * 180.02562 * 6 5 3 33 33 H 1.07998 * 120.05521 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47525 * 299.99439 * 14 12 11 35 35 H 1.09009 * 109.46654 * 180.02562 * 14 12 11 36 36 H 1.08999 * 109.47572 * 60.00443 * 14 12 11 37 37 H 1.09000 * 109.47337 * 90.00392 * 18 17 15 38 38 H 1.09002 * 109.46853 * 209.99661 * 18 17 15 39 39 H 1.09003 * 109.47293 * 329.99775 * 18 17 15 40 40 H 1.08999 * 109.47236 * 210.00364 * 19 17 15 41 41 H 1.09004 * 109.46734 * 329.99833 * 19 17 15 42 42 H 0.97008 * 119.99942 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3663 -0.0005 5 6 3.5855 1.1959 -0.0062 6 6 4.2831 0.0012 -0.0058 7 6 3.6032 -1.1988 -0.0001 8 6 2.2068 -1.2077 0.0057 9 6 1.4732 -2.4901 0.0124 10 8 0.2644 -2.4976 0.1317 11 8 2.1448 -3.6509 -0.1138 12 6 1.3592 -4.8720 -0.0994 13 1 0.4696 -4.7244 0.5130 14 6 0.9419 -5.2267 -1.5280 15 6 2.1848 -5.9937 0.4760 16 8 3.3506 -5.8077 0.7540 17 7 1.6276 -7.2035 0.6817 18 6 0.2195 -7.4282 0.3455 19 6 2.4300 -8.2939 1.2416 20 6 2.3289 -8.2714 2.7450 21 1 1.7268 -7.5203 3.2345 22 6 3.0050 -9.2097 3.4955 23 7 2.9164 -9.1904 4.8076 24 14 4.0471 -10.5085 2.6489 25 1 5.4338 -10.0023 2.4870 26 1 4.0641 -11.7439 3.4727 27 1 3.4718 -10.8117 1.3138 28 1 -0.3634 -0.1127 1.0214 29 1 -0.3634 0.9410 -0.4132 30 1 -0.3634 -0.8282 -0.6084 31 1 4.1230 2.1326 -0.0111 32 1 5.3631 0.0083 -0.0102 33 1 4.1499 -2.1302 0.0006 34 1 0.3446 -4.4154 -1.9441 35 1 0.3517 -6.1431 -1.5171 36 1 1.8314 -5.3742 -2.1404 37 1 0.1425 -7.7707 -0.6864 38 1 -0.1967 -8.1843 1.0112 39 1 -0.3349 -6.4969 0.4616 40 1 2.0589 -9.2477 0.8666 41 1 3.4714 -8.1676 0.9456 42 1 3.3924 -9.8503 5.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817244809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:44 Heat of formation + Delta-G solvation = -126.094496 kcal Electronic energy + Delta-G solvation = -27134.114768 eV Core-core repulsion = 22994.666251 eV Total energy + Delta-G solvation = -4139.448517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.21895 -40.98519 -39.51484 -38.61647 -36.54881 -35.08205 -33.04887 -32.91030 -31.99200 -30.97557 -28.35918 -27.52054 -26.33888 -25.06127 -24.04739 -22.51322 -21.83715 -20.98329 -18.95814 -18.61337 -17.25207 -17.00603 -16.76598 -16.44390 -16.31573 -16.07993 -15.86162 -15.70777 -15.22858 -14.82871 -14.16253 -13.89667 -13.70950 -13.54291 -13.49424 -13.35454 -12.98401 -12.66257 -12.47799 -12.36320 -12.30010 -12.23970 -12.19165 -11.88294 -11.68111 -11.53877 -11.42810 -11.00229 -10.76953 -10.56791 -10.30443 -10.19167 -9.59152 -9.42007 -9.07419 -8.98615 -8.62963 -7.84214 -6.12432 -4.12251 0.27279 0.80143 2.24740 2.29946 3.12246 3.26384 3.28907 3.32218 3.34023 3.66822 3.92278 4.30857 4.35766 4.36310 4.55779 4.61687 4.70018 4.87106 4.89965 4.99859 5.20387 5.23542 5.31839 5.43554 5.51119 5.53759 5.56711 5.62870 5.72289 5.73936 5.85499 5.89888 5.92739 6.02477 6.12942 6.32995 6.46336 6.60443 6.85133 7.18773 7.54405 7.59688 8.05777 8.40824 8.76899 8.90912 9.46701 11.00826 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.002819 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.381029 B = 9930.565472 C =10488.966050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.052 4.052 3 C 0.079 3.921 4 F -0.134 7.134 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.061 4.061 8 C -0.101 4.101 9 C 0.509 3.491 10 O -0.498 6.498 11 O -0.319 6.319 12 C 0.072 3.928 13 H 0.109 0.891 14 C -0.170 4.170 15 C 0.511 3.489 16 O -0.518 6.518 17 N -0.591 5.591 18 C 0.075 3.925 19 C 0.217 3.783 20 C -0.533 4.533 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.265 1.265 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 17.382 -14.453 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C 0.060 3.940 4 F -0.112 7.112 5 C -0.133 4.133 6 C -0.129 4.129 7 C -0.080 4.080 8 C -0.102 4.102 9 C 0.354 3.646 10 O -0.387 6.387 11 O -0.234 6.234 12 C 0.014 3.986 13 H 0.127 0.873 14 C -0.228 4.228 15 C 0.296 3.704 16 O -0.394 6.394 17 N -0.324 5.324 18 C -0.068 4.068 19 C 0.097 3.903 20 C -0.571 4.571 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.086 17.359 -14.096 22.574 hybrid contribution 0.287 -0.518 -0.100 0.601 sum -2.799 16.841 -14.196 22.203 Atomic orbital electron populations 1.21083 0.88790 1.03799 1.04363 1.20001 0.97895 0.90320 0.97150 1.17257 0.89951 0.80812 1.05974 1.91504 1.80351 1.45270 1.94113 1.21432 0.92093 1.00342 0.99461 1.21043 1.00921 0.90900 1.00070 1.21720 0.92671 0.99994 0.93583 1.18735 0.93572 0.89542 1.08332 1.21016 0.85893 0.84667 0.73018 1.90782 1.14800 1.87501 1.45664 1.86635 1.40557 1.13744 1.82496 1.22627 0.94658 0.81890 0.99442 0.87291 1.22293 1.02907 1.03573 0.93995 1.19752 0.87879 0.83169 0.79600 1.90704 1.16674 1.81350 1.50643 1.47727 1.11349 1.11231 1.62090 1.21885 0.82382 1.02365 1.00204 1.19727 0.91666 0.83941 0.94951 1.21312 1.31066 1.15711 0.89025 0.90721 1.24859 0.95951 0.97434 0.94728 1.69902 1.42828 1.35997 1.04657 0.86840 0.81620 0.81344 0.79808 1.19837 1.21014 1.19021 0.89845 0.91610 0.88278 0.84055 0.83874 0.83044 0.91133 0.89190 0.90918 0.92967 0.90029 0.91977 0.94801 0.94339 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.60 36.01 0.31 -1.03 16 2 C -0.05 -0.60 5.92 -104.14 -0.62 -1.22 16 3 C 0.08 0.82 7.24 -39.48 -0.29 0.53 16 4 F -0.13 -1.41 16.37 2.25 0.04 -1.37 16 5 C -0.11 -0.95 10.02 -39.43 -0.39 -1.35 16 6 C -0.11 -0.93 10.03 -39.66 -0.40 -1.33 16 7 C -0.06 -0.66 9.61 -39.17 -0.38 -1.04 16 8 C -0.10 -1.25 5.87 -104.99 -0.62 -1.87 16 9 C 0.51 7.41 7.80 34.61 0.27 7.68 16 10 O -0.50 -7.54 12.61 -19.25 -0.24 -7.79 16 11 O -0.32 -5.14 8.69 -47.17 -0.41 -5.55 16 12 C 0.07 1.14 2.17 -27.89 -0.06 1.08 16 13 H 0.11 1.67 6.15 -51.93 -0.32 1.35 16 14 C -0.17 -2.03 9.27 37.16 0.34 -1.68 16 15 C 0.51 10.43 7.10 -10.99 -0.08 10.35 16 16 O -0.52 -12.78 16.09 -14.06 -0.23 -13.00 16 17 N -0.59 -11.84 2.86 -182.96 -0.52 -12.36 16 18 C 0.08 1.09 8.92 59.85 0.53 1.63 16 19 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 20 C -0.53 -15.14 9.94 -34.44 -0.34 -15.49 16 21 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 23 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 24 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.61 7.46 -51.92 -0.39 0.23 16 30 H 0.10 1.15 5.87 -51.93 -0.30 0.85 16 31 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.15 1.67 7.63 -52.49 -0.40 1.27 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.92 5.12 -51.92 -0.27 0.66 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.60 7.02 -51.93 -0.36 0.23 16 38 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 39 H 0.06 0.77 6.07 -51.93 -0.32 0.46 16 40 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 41 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -34.63 355.27 -6.94 -41.58 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.21 Total: -0.16 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.83 Total: 3.43 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.25 Total: -39.03 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.88 Total: -26.34 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.63 -6.94 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817244809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.519 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds