Wall clock time and date at job start Tue Mar 31 2020 14:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38199 * 120.09124 * 2 1 4 4 F 1.35107 * 119.95182 * 359.97438 * 3 2 1 5 5 C 1.38555 * 120.09619 * 180.29568 * 3 2 1 6 6 C 1.38341 * 120.27924 * 359.68495 * 5 3 2 7 7 C 1.37931 * 120.18098 * 0.03658 * 6 5 3 8 8 C 1.39577 * 120.08854 * 179.72780 * 2 1 3 9 9 C 1.47738 * 120.14063 * 359.97438 * 8 2 1 10 10 O 1.21473 * 119.99723 * 353.51798 * 9 8 2 11 11 O 1.34705 * 120.00186 * 173.51859 * 9 8 2 12 12 C 1.45206 * 116.99957 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46711 * 329.99490 * 12 11 9 14 14 C 1.52998 * 109.46771 * 89.99575 * 12 11 9 15 15 C 1.50694 * 109.46962 * 209.99578 * 12 11 9 16 16 O 1.21286 * 120.00131 * 355.00233 * 15 12 11 17 17 N 1.34776 * 119.99845 * 174.99843 * 15 12 11 18 18 C 1.46497 * 119.99897 * 0.02562 * 17 15 12 19 19 C 1.46500 * 120.00173 * 180.02562 * 17 15 12 20 20 C 1.50698 * 109.47600 * 89.99611 * 19 17 15 21 21 H 1.07999 * 119.99832 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00130 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99881 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00352 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47316 * 89.99592 * 24 22 20 26 26 H 1.48503 * 109.47467 * 210.00249 * 24 22 20 27 27 H 1.48507 * 109.46793 * 329.99842 * 24 22 20 28 28 H 1.08996 * 109.47506 * 263.70326 * 1 2 3 29 29 H 1.09009 * 109.47059 * 23.70408 * 1 2 3 30 30 H 1.09004 * 109.47390 * 143.69738 * 1 2 3 31 31 H 1.08004 * 119.85750 * 179.69743 * 5 3 2 32 32 H 1.08002 * 119.91283 * 180.02562 * 6 5 3 33 33 H 1.07998 * 120.05521 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47525 * 299.99439 * 14 12 11 35 35 H 1.09009 * 109.46654 * 180.02562 * 14 12 11 36 36 H 1.08999 * 109.47572 * 60.00443 * 14 12 11 37 37 H 1.09000 * 109.47337 * 90.00392 * 18 17 15 38 38 H 1.09002 * 109.46853 * 209.99661 * 18 17 15 39 39 H 1.09003 * 109.47293 * 329.99775 * 18 17 15 40 40 H 1.08999 * 109.47236 * 210.00364 * 19 17 15 41 41 H 1.09004 * 109.46734 * 329.99833 * 19 17 15 42 42 H 0.97008 * 119.99942 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3663 -0.0005 5 6 3.5855 1.1959 -0.0062 6 6 4.2831 0.0012 -0.0058 7 6 3.6032 -1.1988 -0.0001 8 6 2.2068 -1.2077 0.0057 9 6 1.4732 -2.4901 0.0124 10 8 0.2644 -2.4976 0.1317 11 8 2.1448 -3.6509 -0.1138 12 6 1.3592 -4.8720 -0.0994 13 1 0.4696 -4.7244 0.5130 14 6 0.9419 -5.2267 -1.5280 15 6 2.1848 -5.9937 0.4760 16 8 3.3506 -5.8077 0.7540 17 7 1.6276 -7.2035 0.6817 18 6 0.2195 -7.4282 0.3455 19 6 2.4300 -8.2939 1.2416 20 6 2.3289 -8.2714 2.7450 21 1 1.7268 -7.5203 3.2345 22 6 3.0050 -9.2097 3.4955 23 7 2.9164 -9.1904 4.8076 24 14 4.0471 -10.5085 2.6489 25 1 5.4338 -10.0023 2.4870 26 1 4.0641 -11.7439 3.4727 27 1 3.4718 -10.8117 1.3138 28 1 -0.3634 -0.1127 1.0214 29 1 -0.3634 0.9410 -0.4132 30 1 -0.3634 -0.8282 -0.6084 31 1 4.1230 2.1326 -0.0111 32 1 5.3631 0.0083 -0.0102 33 1 4.1499 -2.1302 0.0006 34 1 0.3446 -4.4154 -1.9441 35 1 0.3517 -6.1431 -1.5171 36 1 1.8314 -5.3742 -2.1404 37 1 0.1425 -7.7707 -0.6864 38 1 -0.1967 -8.1843 1.0112 39 1 -0.3349 -6.4969 0.4616 40 1 2.0589 -9.2477 0.8666 41 1 3.4714 -8.1676 0.9456 42 1 3.3924 -9.8503 5.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817244809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:44 Heat of formation + Delta-G solvation = -146.937837 kcal Electronic energy + Delta-G solvation = -27135.018603 eV Core-core repulsion = 22994.666251 eV Total energy + Delta-G solvation = -4140.352353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01292 -42.12506 -40.84475 -39.69006 -37.74232 -36.75870 -34.87059 -33.86102 -33.35197 -31.93210 -30.15949 -28.35296 -27.70956 -26.17726 -25.36342 -23.94844 -22.83763 -22.07816 -20.44187 -19.64318 -19.15750 -18.40080 -17.95811 -17.45722 -17.41645 -17.11399 -16.83708 -16.74333 -16.58358 -16.44943 -15.67482 -15.10435 -14.89161 -14.63886 -14.43543 -14.37961 -14.34526 -14.08768 -13.74386 -13.66913 -13.52703 -13.39956 -13.10718 -13.05448 -12.98758 -12.81585 -12.64240 -12.42345 -12.37411 -12.04180 -11.94187 -11.75703 -11.34136 -10.84082 -10.69678 -10.21564 -9.78486 -9.51247 -8.34851 -6.41334 -0.58778 0.01376 1.10908 1.27709 1.34434 1.38572 1.46950 1.56326 2.26711 2.31259 2.45485 2.99550 3.10684 3.34220 3.36951 3.57187 3.69704 3.79143 3.82321 3.85896 4.15468 4.29618 4.42155 4.54609 4.56653 4.60386 4.62923 4.65240 4.77953 4.79770 4.87583 4.90765 4.98527 5.03431 5.09700 5.10569 5.17955 5.34389 5.42593 5.50792 5.68949 6.19615 6.42484 6.54647 6.60424 7.13062 7.26709 8.82230 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.002819 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.381029 B = 9930.565472 C =10488.966050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C 0.071 3.929 4 F -0.135 7.135 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.070 4.070 8 C -0.122 4.122 9 C 0.506 3.494 10 O -0.510 6.510 11 O -0.335 6.335 12 C 0.078 3.922 13 H 0.113 0.887 14 C -0.161 4.161 15 C 0.502 3.498 16 O -0.574 6.574 17 N -0.596 5.596 18 C 0.066 3.934 19 C 0.224 3.776 20 C -0.542 4.542 21 H 0.025 0.975 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.951 3.049 25 H -0.276 1.276 26 H -0.276 1.276 27 H -0.232 1.232 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 17.789 -16.926 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C 0.052 3.948 4 F -0.114 7.114 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.088 4.088 8 C -0.124 4.124 9 C 0.353 3.647 10 O -0.401 6.401 11 O -0.251 6.251 12 C 0.020 3.980 13 H 0.130 0.870 14 C -0.218 4.218 15 C 0.289 3.711 16 O -0.453 6.453 17 N -0.328 5.328 18 C -0.075 4.075 19 C 0.102 3.898 20 C -0.580 4.580 21 H 0.044 0.956 22 C -0.188 4.188 23 N -0.586 5.586 24 Si 0.773 3.227 25 H -0.201 1.201 26 H -0.201 1.201 27 H -0.155 1.155 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.846 17.774 -16.602 24.488 hybrid contribution 0.164 -0.510 0.747 0.919 sum -2.682 17.264 -15.855 23.593 Atomic orbital electron populations 1.21022 0.88811 1.04055 1.03809 1.20079 0.98138 0.90583 0.97701 1.17411 0.90808 0.80278 1.06328 1.91501 1.80571 1.45154 1.94171 1.21818 0.91241 1.01707 0.96946 1.21391 1.02446 0.89742 0.98234 1.21797 0.92112 1.00934 0.94002 1.18736 0.94284 0.88732 1.10613 1.21433 0.85989 0.84794 0.72514 1.90763 1.15235 1.87603 1.46456 1.86633 1.41347 1.14277 1.82848 1.22590 0.93198 0.80486 1.01687 0.86959 1.22302 1.03368 1.05125 0.90976 1.20589 0.87698 0.84092 0.78713 1.90661 1.19221 1.82392 1.53034 1.47806 1.13242 1.10467 1.61301 1.22250 0.79252 1.03579 1.02460 1.19439 0.91939 0.86427 0.91966 1.21558 1.30271 1.14428 0.91756 0.95629 1.25900 0.97342 1.00217 0.95346 1.70063 1.44365 1.37489 1.06691 0.85674 0.79041 0.77873 0.80110 1.20133 1.20121 1.15522 0.90523 0.90274 0.89302 0.80710 0.80623 0.83894 0.89508 0.87035 0.90902 0.88665 0.90716 0.89895 0.92103 0.95841 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.60 71.24 0.61 -2.00 16 2 C -0.06 -1.44 5.92 -19.55 -0.12 -1.55 16 3 C 0.07 1.34 7.24 22.34 0.16 1.50 16 4 F -0.14 -2.61 16.37 44.97 0.74 -1.87 16 5 C -0.10 -1.35 10.02 22.37 0.22 -1.13 16 6 C -0.10 -1.43 10.03 22.22 0.22 -1.21 16 7 C -0.07 -1.48 9.61 22.54 0.22 -1.26 16 8 C -0.12 -3.06 5.87 -20.10 -0.12 -3.18 16 9 C 0.51 15.03 7.80 70.33 0.55 15.58 16 10 O -0.51 -15.66 12.61 19.92 0.25 -15.41 16 11 O -0.34 -11.03 8.69 -49.78 -0.43 -11.46 16 12 C 0.08 2.45 2.17 29.85 0.06 2.52 16 13 H 0.11 3.41 6.15 -2.39 -0.01 3.39 16 14 C -0.16 -3.49 9.27 71.98 0.67 -2.82 16 15 C 0.50 20.74 7.10 87.66 0.62 21.37 16 16 O -0.57 -29.35 16.09 15.70 0.25 -29.10 16 17 N -0.60 -23.65 2.86 -851.14 -2.43 -26.08 16 18 C 0.07 1.78 8.92 127.77 1.14 2.92 16 19 C 0.22 10.64 4.23 85.63 0.36 11.00 16 20 C -0.54 -31.75 9.94 25.60 0.25 -31.50 16 21 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 22 C 0.01 0.59 5.47 84.65 0.46 1.05 16 23 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 24 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.43 7.46 -2.38 -0.02 1.42 16 30 H 0.09 2.09 5.87 -2.39 -0.01 2.08 16 31 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.14 3.23 7.63 -2.91 -0.02 3.20 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 1.90 5.12 -2.38 -0.01 1.88 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.79 7.02 -2.39 -0.02 1.78 16 38 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 39 H 0.08 1.89 6.07 -2.39 -0.01 1.88 16 40 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16 41 H 0.02 1.19 6.85 -2.38 -0.02 1.17 16 42 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -80.21 355.27 6.89 -73.33 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.00 Total: 13.38 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.33 Total: 11.28 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.13 Total: -85.65 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: 0.07 Total: -55.97 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.74 Total: -1.87 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -80.21 6.89 -73.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817244809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.610 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds