Wall clock time and date at job start Tue Mar 31 2020 14:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 119.99553 * 2 1 4 4 C 1.38242 * 119.99319 * 180.29701 * 3 2 1 5 5 C 1.38232 * 120.00228 * 359.69837 * 4 3 2 6 6 C 1.38228 * 120.00016 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00113 * 179.97438 * 6 5 4 8 8 C 1.38236 * 120.00065 * 179.74172 * 2 1 3 9 9 C 1.50699 * 119.99757 * 0.02562 * 8 2 1 10 10 N 1.46495 * 109.47171 * 269.72486 * 9 8 2 11 11 S 1.65594 * 120.00068 * 165.27778 * 10 9 8 12 12 O 1.42105 * 104.27679 * 180.79599 * 11 10 9 13 13 O 1.42098 * 104.27780 * 308.65249 * 11 10 9 14 14 C 1.81403 * 104.45006 * 64.72638 * 11 10 9 15 15 C 1.52997 * 109.47124 * 173.80901 * 14 11 10 16 16 C 1.50700 * 115.54884 * 65.19552 * 15 14 11 17 17 H 1.08004 * 120.00091 * 264.77971 * 16 15 14 18 18 C 1.37879 * 120.00026 * 84.78402 * 16 15 14 19 19 N 1.31516 * 119.99983 * 352.23228 * 18 16 15 20 20 Si 1.86802 * 120.00072 * 172.23252 * 18 16 15 21 21 H 1.48497 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47087 * 120.00078 * 20 18 16 23 23 H 1.48503 * 109.46948 * 239.99695 * 20 18 16 24 24 C 1.53003 * 117.50167 * 279.52594 * 15 14 11 25 25 C 1.53002 * 117.50015 * 210.86444 * 15 14 11 26 26 H 1.08993 * 109.47042 * 270.25734 * 1 2 3 27 27 H 1.09004 * 109.47012 * 30.26172 * 1 2 3 28 28 H 1.09006 * 109.46593 * 150.25587 * 1 2 3 29 29 H 1.07996 * 120.00647 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99479 * 179.72787 * 4 3 2 31 31 H 1.08003 * 119.99955 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46716 * 270.02474 * 7 6 5 33 33 H 1.08998 * 109.46917 * 30.02122 * 7 6 5 34 34 H 1.08999 * 109.47013 * 150.02607 * 7 6 5 35 35 H 1.09006 * 109.46540 * 149.73030 * 9 8 2 36 36 H 1.08997 * 109.47496 * 29.73121 * 9 8 2 37 37 H 0.97002 * 120.00143 * 345.00445 * 10 9 8 38 38 H 1.08997 * 109.47169 * 293.81351 * 14 11 10 39 39 H 1.09005 * 109.46878 * 53.81476 * 14 11 10 40 40 H 0.97003 * 120.00122 * 185.02211 * 19 18 16 41 41 H 1.08997 * 117.49767 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49842 * 145.02264 * 24 15 14 43 43 H 1.09001 * 117.49716 * 214.98342 * 25 15 14 44 44 H 1.09001 * 117.49794 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0062 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1971 -0.0003 7 6 4.3341 -2.5022 -0.0008 8 6 2.1982 -1.1971 0.0054 9 6 1.4447 -2.5022 0.0107 10 7 1.2057 -2.9225 1.3936 11 16 0.0994 -4.1111 1.7183 12 8 0.1234 -4.2349 3.1337 13 8 -1.0760 -3.6908 1.0394 14 6 0.7887 -5.5965 0.9376 15 6 -0.0719 -6.8087 1.2993 16 6 -1.4805 -6.7887 0.7639 17 1 -2.2876 -6.4225 1.3811 18 6 -1.7388 -7.2381 -0.5137 19 7 -0.7434 -7.5400 -1.3185 20 14 -3.5027 -7.4183 -1.1017 21 1 -4.4305 -7.0177 -0.0136 22 1 -3.7214 -6.5481 -2.2849 23 1 -3.7584 -8.8330 -1.4738 24 6 0.1543 -7.4525 2.6687 25 6 0.6265 -8.1663 1.3996 26 1 -0.3633 0.0046 1.0276 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3633 -0.8923 -0.5099 29 1 1.6582 2.1325 0.0004 30 1 4.1205 2.1325 -0.0106 31 1 5.3517 0.0001 -0.0105 32 1 4.5115 -2.8189 -1.0287 33 1 5.2886 -2.3708 0.5088 34 1 3.7471 -3.2608 0.5169 35 1 2.0320 -3.2628 -0.5039 36 1 0.4904 -2.3729 -0.4999 37 1 1.6984 -2.5073 2.1187 38 1 0.7978 -5.4672 -0.1446 39 1 1.8068 -5.7547 1.2933 40 1 -0.9219 -7.7860 -2.2396 41 1 0.9165 -7.0126 3.3119 42 1 -0.7157 -7.8619 3.1822 43 1 0.0671 -9.0450 1.0787 44 1 1.6991 -8.1959 1.2075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830890315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:00 Heat of formation + Delta-G solvation = -35.736015 kcal Electronic energy + Delta-G solvation = -25852.301738 eV Core-core repulsion = 22282.984635 eV Total energy + Delta-G solvation = -3569.317104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93580 -36.75800 -36.25642 -35.33325 -34.99477 -33.66037 -32.04688 -31.63241 -28.17111 -27.80893 -26.71377 -25.46674 -25.30067 -21.21733 -20.97296 -20.76400 -19.73108 -18.66557 -17.14489 -16.58880 -16.18648 -16.10189 -15.60450 -15.06388 -14.73523 -14.51418 -14.33733 -13.96040 -13.65185 -13.25192 -13.20554 -13.14169 -13.02251 -12.79726 -12.68202 -11.95780 -11.84681 -11.81059 -11.67361 -11.50874 -11.27825 -11.15197 -11.05378 -11.01714 -10.95068 -10.68878 -10.56920 -10.45518 -10.11699 -9.72023 -9.18479 -8.95669 -8.75979 -8.62529 -8.57606 -8.09319 -6.14719 -4.24910 0.96637 1.27930 1.33077 3.28178 3.36203 3.41358 3.43564 3.75841 4.37046 4.50336 4.62631 4.70303 4.80734 4.87276 5.01757 5.13182 5.18315 5.19256 5.22716 5.37744 5.44251 5.54989 5.60012 5.62899 5.64000 5.77952 5.79647 5.87170 5.96786 6.09150 6.13948 6.24084 6.26999 6.36795 6.38297 6.45673 6.60604 6.63303 6.71899 6.93152 6.97961 7.22168 7.30043 7.38664 7.80214 8.20093 8.80974 9.46312 10.93016 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003959 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.831353 B = 7071.679823 C = 7517.651540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.133 4.133 6 C -0.064 4.064 7 C -0.125 4.125 8 C -0.097 4.097 9 C 0.152 3.848 10 N -1.127 6.127 11 S 2.606 3.394 12 O -0.974 6.974 13 O -0.949 6.949 14 C -0.555 4.555 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.069 0.931 18 C 0.082 3.918 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.208 4.208 25 C -0.141 4.141 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.410 0.590 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.262 0.738 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 13.592 0.432 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.129 4.129 5 C -0.151 4.151 6 C -0.065 4.065 7 C -0.181 4.181 8 C -0.098 4.098 9 C 0.027 3.973 10 N -0.883 5.883 11 S 2.703 3.297 12 O -0.964 6.964 13 O -0.939 6.939 14 C -0.688 4.688 15 C 0.041 3.959 16 C -0.552 4.552 17 H 0.087 0.913 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.209 1.209 24 C -0.246 4.246 25 C -0.181 4.181 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.242 0.758 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.786 13.523 0.588 16.703 hybrid contribution 0.075 -0.137 -0.609 0.629 sum 9.861 13.387 -0.021 16.626 Atomic orbital electron populations 1.20965 0.90769 1.03366 1.03121 1.19873 0.96350 0.92395 0.97322 1.21002 0.94218 0.97398 1.02366 1.21108 0.94295 0.97863 0.99592 1.20969 0.99608 0.91936 1.02549 1.19821 0.92966 0.95589 0.98111 1.20930 0.99898 0.94475 1.02808 1.19591 0.92933 0.94340 1.02952 1.20197 1.00520 0.93282 0.83341 1.56015 1.62691 1.56546 1.13098 1.05170 0.74253 0.75625 0.74613 1.93508 1.86582 1.86824 1.29529 1.93528 1.44500 1.79864 1.75997 1.29985 1.08154 1.16951 1.13675 1.18285 0.94543 0.88646 0.94451 1.20567 0.90441 1.44252 0.99924 0.91303 1.24947 0.97343 0.93509 0.96478 1.69985 1.30884 1.44636 1.05512 0.86524 0.84874 0.77632 0.79103 1.19216 1.20626 1.20862 1.23199 1.02656 1.07348 0.91367 1.22553 0.97785 0.97857 0.99859 0.90671 0.91608 0.90176 0.86135 0.86254 0.86188 0.90756 0.91485 0.90603 0.90928 0.89056 0.75768 0.84856 0.88271 0.92789 0.90692 0.89532 0.89600 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.60 36.01 0.35 -1.15 16 2 C -0.06 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.13 -1.38 9.70 -39.58 -0.38 -1.77 16 4 C -0.11 -1.07 10.05 -39.58 -0.40 -1.46 16 5 C -0.13 -1.33 9.70 -39.59 -0.38 -1.71 16 6 C -0.06 -0.72 5.88 -104.62 -0.62 -1.33 16 7 C -0.12 -1.20 9.19 36.01 0.33 -0.87 16 8 C -0.10 -1.21 5.28 -104.62 -0.55 -1.76 16 9 C 0.15 2.10 5.04 -5.20 -0.03 2.07 16 10 N -1.13 -16.79 5.83 -11.66 -0.07 -16.86 16 11 S 2.61 51.68 5.19 -107.50 -0.56 51.12 16 12 O -0.97 -21.28 18.08 -57.54 -1.04 -22.32 16 13 O -0.95 -22.00 17.18 -57.54 -0.99 -22.99 16 14 C -0.55 -11.36 5.92 37.16 0.22 -11.14 16 15 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 16 C -0.51 -13.94 8.18 -34.44 -0.28 -14.22 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 19 N -0.87 -23.72 12.98 55.43 0.72 -23.00 16 20 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 25 C -0.14 -3.19 9.49 -26.69 -0.25 -3.44 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.08 1.04 5.94 -51.93 -0.31 0.73 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.08 0.77 6.66 -51.93 -0.35 0.43 16 35 H 0.07 0.91 6.70 -51.93 -0.35 0.56 16 36 H 0.09 1.34 5.50 -51.93 -0.29 1.05 16 37 H 0.41 5.40 8.61 -34.46 -0.30 5.10 16 38 H 0.13 2.81 8.14 -51.93 -0.42 2.39 16 39 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 40 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -32.22 375.71 -11.09 -43.32 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.62 Total: 8.83 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: -3.18 Total: -39.98 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.65 Total: -39.86 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.03 Total: -45.31 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 51.68 SS G_CDS: -0.56 Total: 51.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.22 -11.09 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830890315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.583 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds