Wall clock time and date at job start Tue Mar 31 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 119.99553 * 2 1 4 4 C 1.38242 * 119.99319 * 180.29701 * 3 2 1 5 5 C 1.38232 * 120.00228 * 359.69837 * 4 3 2 6 6 C 1.38228 * 120.00016 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00113 * 179.97438 * 6 5 4 8 8 C 1.38236 * 120.00065 * 179.74172 * 2 1 3 9 9 C 1.50699 * 119.99757 * 0.02562 * 8 2 1 10 10 N 1.46495 * 109.47171 * 269.72486 * 9 8 2 11 11 S 1.65594 * 120.00068 * 165.27778 * 10 9 8 12 12 O 1.42105 * 104.27679 * 180.79599 * 11 10 9 13 13 O 1.42098 * 104.27780 * 308.65249 * 11 10 9 14 14 C 1.81403 * 104.45006 * 64.72638 * 11 10 9 15 15 C 1.52997 * 109.47124 * 173.80901 * 14 11 10 16 16 C 1.50700 * 115.54884 * 65.19552 * 15 14 11 17 17 H 1.08004 * 120.00091 * 264.77971 * 16 15 14 18 18 C 1.37879 * 120.00026 * 84.78402 * 16 15 14 19 19 N 1.31516 * 119.99983 * 352.23228 * 18 16 15 20 20 Si 1.86802 * 120.00072 * 172.23252 * 18 16 15 21 21 H 1.48497 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47087 * 120.00078 * 20 18 16 23 23 H 1.48503 * 109.46948 * 239.99695 * 20 18 16 24 24 C 1.53003 * 117.50167 * 279.52594 * 15 14 11 25 25 C 1.53002 * 117.50015 * 210.86444 * 15 14 11 26 26 H 1.08993 * 109.47042 * 270.25734 * 1 2 3 27 27 H 1.09004 * 109.47012 * 30.26172 * 1 2 3 28 28 H 1.09006 * 109.46593 * 150.25587 * 1 2 3 29 29 H 1.07996 * 120.00647 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99479 * 179.72787 * 4 3 2 31 31 H 1.08003 * 119.99955 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46716 * 270.02474 * 7 6 5 33 33 H 1.08998 * 109.46917 * 30.02122 * 7 6 5 34 34 H 1.08999 * 109.47013 * 150.02607 * 7 6 5 35 35 H 1.09006 * 109.46540 * 149.73030 * 9 8 2 36 36 H 1.08997 * 109.47496 * 29.73121 * 9 8 2 37 37 H 0.97002 * 120.00143 * 345.00445 * 10 9 8 38 38 H 1.08997 * 109.47169 * 293.81351 * 14 11 10 39 39 H 1.09005 * 109.46878 * 53.81476 * 14 11 10 40 40 H 0.97003 * 120.00122 * 185.02211 * 19 18 16 41 41 H 1.08997 * 117.49767 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49842 * 145.02264 * 24 15 14 43 43 H 1.09001 * 117.49716 * 214.98342 * 25 15 14 44 44 H 1.09001 * 117.49794 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0062 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1971 -0.0003 7 6 4.3341 -2.5022 -0.0008 8 6 2.1982 -1.1971 0.0054 9 6 1.4447 -2.5022 0.0107 10 7 1.2057 -2.9225 1.3936 11 16 0.0994 -4.1111 1.7183 12 8 0.1234 -4.2349 3.1337 13 8 -1.0760 -3.6908 1.0394 14 6 0.7887 -5.5965 0.9376 15 6 -0.0719 -6.8087 1.2993 16 6 -1.4805 -6.7887 0.7639 17 1 -2.2876 -6.4225 1.3811 18 6 -1.7388 -7.2381 -0.5137 19 7 -0.7434 -7.5400 -1.3185 20 14 -3.5027 -7.4183 -1.1017 21 1 -4.4305 -7.0177 -0.0136 22 1 -3.7214 -6.5481 -2.2849 23 1 -3.7584 -8.8330 -1.4738 24 6 0.1543 -7.4525 2.6687 25 6 0.6265 -8.1663 1.3996 26 1 -0.3633 0.0046 1.0276 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3633 -0.8923 -0.5099 29 1 1.6582 2.1325 0.0004 30 1 4.1205 2.1325 -0.0106 31 1 5.3517 0.0001 -0.0105 32 1 4.5115 -2.8189 -1.0287 33 1 5.2886 -2.3708 0.5088 34 1 3.7471 -3.2608 0.5169 35 1 2.0320 -3.2628 -0.5039 36 1 0.4904 -2.3729 -0.4999 37 1 1.6984 -2.5073 2.1187 38 1 0.7978 -5.4672 -0.1446 39 1 1.8068 -5.7547 1.2933 40 1 -0.9219 -7.7860 -2.2396 41 1 0.9165 -7.0126 3.3119 42 1 -0.7157 -7.8619 3.1822 43 1 0.0671 -9.0450 1.0787 44 1 1.6991 -8.1959 1.2075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830890315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:59 Heat of formation + Delta-G solvation = -55.541574 kcal Electronic energy + Delta-G solvation = -25853.160572 eV Core-core repulsion = 22282.984635 eV Total energy + Delta-G solvation = -3570.175937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77661 -38.55914 -37.94102 -36.80723 -36.33924 -34.47474 -34.07706 -32.57756 -29.84632 -28.71816 -27.50772 -27.47292 -26.31266 -22.98531 -21.85912 -21.57747 -21.50531 -20.25101 -18.56886 -18.35165 -17.48602 -17.10252 -16.76312 -16.66428 -16.56453 -15.91284 -15.51232 -15.34028 -14.89939 -14.73551 -14.27323 -14.03884 -13.86237 -13.77546 -13.72960 -13.64398 -13.47398 -13.11938 -12.99749 -12.89548 -12.85573 -12.84936 -12.62005 -12.44317 -12.43714 -12.20990 -11.91884 -11.85484 -11.62117 -11.51563 -10.86761 -10.55212 -10.48564 -9.86846 -9.60417 -9.42490 -8.18951 -6.33077 -0.53560 0.40363 0.47776 1.37035 1.40749 1.51627 2.07658 2.40179 2.84461 2.95057 3.08404 3.39092 3.46298 3.67545 3.89465 3.98411 4.00339 4.14266 4.22920 4.31802 4.39679 4.46237 4.52285 4.59056 4.60437 4.71781 4.77604 4.83983 4.85109 4.85894 4.92921 4.98561 5.01621 5.06447 5.22194 5.30720 5.39288 5.47692 5.59589 5.60697 5.65453 5.72699 5.77761 6.12508 6.14754 6.23552 6.72983 7.39180 8.88231 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003959 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.831353 B = 7071.679823 C = 7517.651540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.108 4.108 5 C -0.135 4.135 6 C -0.071 4.071 7 C -0.127 4.127 8 C -0.114 4.114 9 C 0.148 3.852 10 N -1.107 6.107 11 S 2.623 3.377 12 O -0.996 6.996 13 O -0.990 6.990 14 C -0.551 4.551 15 C 0.010 3.990 16 C -0.533 4.533 17 H 0.047 0.953 18 C 0.045 3.955 19 N -0.891 5.891 20 Si 0.934 3.066 21 H -0.274 1.274 22 H -0.276 1.276 23 H -0.272 1.272 24 C -0.198 4.198 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.420 0.580 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 14.830 0.369 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.077 4.077 3 C -0.156 4.156 4 C -0.126 4.126 5 C -0.153 4.153 6 C -0.071 4.071 7 C -0.183 4.183 8 C -0.116 4.116 9 C 0.023 3.977 10 N -0.868 5.868 11 S 2.721 3.279 12 O -0.986 6.986 13 O -0.980 6.980 14 C -0.684 4.684 15 C 0.008 3.992 16 C -0.571 4.571 17 H 0.065 0.935 18 C -0.158 4.158 19 N -0.527 5.527 20 Si 0.759 3.241 21 H -0.198 1.198 22 H -0.201 1.201 23 H -0.197 1.197 24 C -0.235 4.235 25 C -0.176 4.176 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.256 0.744 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.972 14.752 0.537 19.007 hybrid contribution -0.549 -0.447 -0.582 0.916 sum 11.423 14.305 -0.046 18.307 Atomic orbital electron populations 1.20950 0.91360 1.03367 1.02607 1.19994 0.96229 0.93150 0.98291 1.21259 0.94951 0.97430 1.01919 1.21484 0.94050 0.99045 0.97982 1.21304 1.00912 0.91507 1.01573 1.20033 0.92445 0.96855 0.97814 1.20986 1.00422 0.93575 1.03348 1.19529 0.93634 0.93511 1.04939 1.20307 1.00345 0.94856 0.82172 1.55497 1.61840 1.55131 1.14293 1.04381 0.74105 0.75840 0.73618 1.93465 1.87087 1.87342 1.30743 1.93477 1.47229 1.80641 1.76615 1.29865 1.09501 1.15779 1.13251 1.18418 0.94001 0.90561 0.96202 1.20719 0.91833 1.44413 1.00112 0.93458 1.25481 1.00142 0.93519 0.96680 1.70019 1.31861 1.45104 1.05703 0.85871 0.81580 0.78085 0.78521 1.19849 1.20136 1.19725 1.23249 1.02985 1.06315 0.90966 1.22514 0.98658 0.96372 1.00096 0.91484 0.89744 0.92065 0.84366 0.83489 0.83808 0.90173 0.89727 0.91352 0.89669 0.90613 0.74447 0.85695 0.84697 0.92527 0.88308 0.90027 0.91578 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.60 71.24 0.68 -2.35 16 2 C -0.08 -1.77 5.88 -19.86 -0.12 -1.89 16 3 C -0.14 -2.59 9.70 22.27 0.22 -2.38 16 4 C -0.11 -1.74 10.05 22.27 0.22 -1.51 16 5 C -0.14 -2.28 9.70 22.27 0.22 -2.07 16 6 C -0.07 -1.43 5.88 -19.87 -0.12 -1.55 16 7 C -0.13 -2.15 9.19 71.24 0.65 -1.50 16 8 C -0.11 -2.76 5.28 -19.87 -0.10 -2.86 16 9 C 0.15 4.07 5.04 85.63 0.43 4.50 16 10 N -1.11 -32.55 5.83 -190.80 -1.11 -33.67 16 11 S 2.62 104.45 5.19 -56.49 -0.29 104.16 16 12 O -1.00 -43.25 18.08 -127.65 -2.31 -45.56 16 13 O -0.99 -47.36 17.18 -127.65 -2.19 -49.56 16 14 C -0.55 -22.19 5.92 71.98 0.43 -21.77 16 15 C 0.01 0.50 1.32 -52.93 -0.07 0.43 16 16 C -0.53 -29.45 8.18 25.60 0.21 -29.24 16 17 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 18 C 0.04 2.44 5.38 84.65 0.46 2.90 16 19 N -0.89 -48.47 12.98 21.45 0.28 -48.19 16 20 Si 0.93 43.91 29.55 68.60 2.03 45.94 16 21 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 C -0.20 -8.46 9.96 30.62 0.30 -8.16 16 25 C -0.14 -6.08 9.49 30.62 0.29 -5.79 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.62 8.09 -2.38 -0.02 1.60 16 28 H 0.06 1.68 5.94 -2.38 -0.01 1.66 16 29 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.07 1.25 6.66 -2.39 -0.02 1.24 16 35 H 0.09 2.09 6.70 -2.38 -0.02 2.07 16 36 H 0.08 2.32 5.50 -2.39 -0.01 2.31 16 37 H 0.42 10.69 8.61 -96.75 -0.83 9.86 16 38 H 0.12 5.26 8.14 -2.39 -0.02 5.24 16 39 H 0.13 4.33 8.09 -2.39 -0.02 4.31 16 40 H 0.27 13.70 8.32 -92.71 -0.77 12.93 16 41 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 42 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -69.28 375.71 0.27 -69.00 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.17 Total: 31.10 kcal Atomic # 6 Polarization: -76.93 SS G_CDS: 3.71 Total: -73.22 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -0.83 Total: -81.86 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -4.50 Total: -95.12 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 104.45 SS G_CDS: -0.29 Total: 104.16 kcal Total: -69.28 0.27 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830890315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.462 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds