Wall clock time and date at job start Tue Mar 31 2020 13:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99638 * 2 1 4 4 H 1.48499 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47192 * 300.00044 * 3 2 1 6 6 H 1.48497 * 109.47059 * 60.00332 * 3 2 1 7 7 C 1.39940 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99894 * 197.85956 * 7 2 1 9 9 C 1.41396 * 120.00531 * 17.86111 * 7 2 1 10 10 C 1.40715 * 120.23995 * 24.37266 * 9 7 2 11 11 C 1.37615 * 119.74317 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25194 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75303 * 179.97438 * 12 11 10 14 14 O 1.45206 * 109.46839 * 90.00332 * 13 12 11 15 15 C 1.34224 * 116.99753 * 180.02562 * 14 13 12 16 16 O 1.20824 * 120.00419 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00005 * 179.97438 * 15 14 13 18 18 H 1.09006 * 115.55633 * 34.31061 * 17 15 14 19 19 C 1.52997 * 117.50218 * 248.62184 * 17 15 14 20 20 C 1.52998 * 117.49987 * 179.97438 * 17 15 14 21 21 H 1.08999 * 117.49636 * 359.97438 * 20 17 15 22 22 C 1.50698 * 117.50095 * 214.97821 * 20 17 15 23 23 C 1.38671 * 120.41555 * 120.02601 * 22 20 17 24 24 C 1.38635 * 118.42216 * 179.97438 * 23 22 20 25 25 C 1.38225 * 119.15507 * 359.97438 * 24 23 22 26 26 N 1.31858 * 120.76809 * 0.02562 * 25 24 23 27 27 C 1.31878 * 121.72077 * 359.97438 * 26 25 24 28 28 C 1.38631 * 120.49618 * 0.25682 * 12 11 10 29 29 C 1.37622 * 120.24998 * 359.44783 * 28 12 11 30 30 H 0.96993 * 120.00316 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.12873 * 0.04702 * 10 9 7 32 32 H 1.08000 * 119.87808 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47340 * 330.00981 * 13 12 11 34 34 H 1.08998 * 109.47221 * 210.00098 * 13 12 11 35 35 H 1.08997 * 117.50187 * 145.01818 * 19 17 15 36 36 H 1.09002 * 117.49352 * 359.97438 * 19 17 15 37 37 H 1.08008 * 120.79155 * 359.95761 * 23 22 20 38 38 H 1.07998 * 120.42231 * 180.02562 * 24 23 22 39 39 H 1.08003 * 119.61163 * 180.02562 * 25 24 23 40 40 H 1.08012 * 119.61378 * 179.97438 * 27 26 25 41 41 H 1.08001 * 119.87696 * 179.70318 * 28 12 11 42 42 H 1.07998 * 120.12646 * 180.27116 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3522 -2.4068 -0.3766 10 6 0.2209 -2.3616 -1.2122 11 6 -0.4098 -3.5308 -1.5714 12 6 0.0652 -4.7499 -1.1129 13 6 -0.6344 -6.0233 -1.5129 14 8 -0.0504 -6.5310 -2.7415 15 6 -0.5646 -7.6678 -3.2363 16 8 -1.4723 -8.2207 -2.6616 17 6 -0.0098 -8.2547 -4.5087 18 1 1.0611 -8.1200 -4.6608 19 6 -0.9077 -8.2324 -5.7473 20 6 -0.6381 -9.5523 -5.0209 21 1 -1.4525 -9.9817 -4.4374 22 6 0.2707 -10.5458 -5.6976 23 6 0.4161 -11.8263 -5.1858 24 6 1.2625 -12.7069 -5.8416 25 6 1.9282 -12.2823 -6.9761 26 7 1.7658 -11.0567 -7.4345 27 6 0.9689 -10.1927 -6.8365 28 6 1.1754 -4.8059 -0.2846 29 6 1.8255 -3.6498 0.0826 30 1 -0.4850 0.8400 0.0004 31 1 -0.1508 -1.4130 -1.5704 32 1 -1.2780 -3.4986 -2.2129 33 1 -1.6940 -5.8217 -1.6705 34 1 -0.5193 -6.7648 -0.7223 35 1 -0.4275 -8.0830 -6.7144 36 1 -1.8999 -7.7936 -5.6417 37 1 -0.1172 -12.1304 -4.2971 38 1 1.3993 -13.7122 -5.4712 39 1 2.5891 -12.9624 -7.4931 40 1 0.8615 -9.1970 -7.2412 41 1 1.5340 -5.7607 0.0706 42 1 2.6929 -3.6961 0.7244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:45 Heat of formation + Delta-G solvation = -25.255960 kcal Electronic energy + Delta-G solvation = -24630.032738 eV Core-core repulsion = 20925.726132 eV Total energy + Delta-G solvation = -3704.306606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83774 -41.07165 -39.56552 -38.38169 -37.14574 -35.69944 -33.39460 -32.64342 -31.84974 -31.25035 -29.13969 -26.65692 -25.43771 -25.02795 -24.23298 -22.97576 -22.14249 -21.84715 -21.20804 -19.29120 -19.01810 -18.13416 -17.91921 -17.40230 -17.18298 -16.96005 -16.29787 -16.00143 -15.65403 -15.52022 -15.15874 -14.87895 -14.64431 -14.26859 -14.00880 -13.96460 -13.87621 -13.60869 -13.24152 -13.09181 -13.08356 -12.80318 -12.74203 -12.43820 -12.28201 -12.11957 -11.74021 -11.68913 -11.57432 -11.42014 -11.30666 -11.05241 -10.68180 -10.40231 -9.83969 -9.45679 -9.35674 -8.70735 -6.41061 0.05889 0.31874 0.70941 1.04256 1.09244 1.37971 1.41934 1.53933 1.85816 2.18860 2.56978 2.69253 2.99285 3.35874 3.52024 3.63107 3.64798 3.75352 3.89653 3.99314 4.05016 4.06850 4.08359 4.10429 4.34239 4.45989 4.48721 4.52981 4.56445 4.69411 4.84980 4.90533 4.98704 4.99157 5.10642 5.20426 5.28434 5.32385 5.37527 5.47933 5.63316 5.75507 5.86418 6.04098 6.12215 6.30103 6.62634 6.71911 6.86972 6.95285 7.01305 8.26430 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.001959 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.696139 B =14287.336118 C =14618.529671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.194 4.194 11 C -0.079 4.079 12 C -0.231 4.231 13 C 0.141 3.859 14 O -0.357 6.357 15 C 0.486 3.514 16 O -0.540 6.540 17 C -0.166 4.166 18 H 0.145 0.855 19 C -0.123 4.123 20 C -0.071 4.071 21 H 0.125 0.875 22 C -0.113 4.113 23 C -0.075 4.075 24 C -0.166 4.166 25 C 0.083 3.917 26 N -0.511 5.511 27 C 0.090 3.910 28 C -0.066 4.066 29 C -0.246 4.246 30 H 0.291 0.709 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.149 0.851 38 H 0.165 0.835 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.117 0.883 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -19.008 -12.171 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.233 4.233 13 C 0.069 3.931 14 O -0.273 6.273 15 C 0.332 3.668 16 O -0.431 6.431 17 C -0.185 4.185 18 H 0.163 0.837 19 C -0.159 4.159 20 C -0.090 4.090 21 H 0.143 0.857 22 C -0.115 4.115 23 C -0.100 4.100 24 C -0.185 4.185 25 C -0.073 4.073 26 N -0.220 5.220 27 C -0.066 4.066 28 C -0.084 4.084 29 C -0.265 4.265 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.196 0.804 40 H 0.186 0.814 41 H 0.135 0.865 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.334 -18.732 -12.699 22.633 hybrid contribution -0.351 0.687 1.337 1.544 sum -0.685 -18.044 -11.362 21.335 Atomic orbital electron populations 1.69870 1.09105 1.30867 1.34471 1.26838 0.95530 1.04748 0.91034 0.85113 0.79435 0.75872 0.79044 1.18068 1.18759 1.18948 1.19945 0.98540 0.92411 1.41146 0.90239 1.18060 0.91584 0.93217 0.88675 1.21282 1.00340 0.97046 1.02684 1.20778 0.98476 0.92397 0.98138 1.18972 1.02837 0.92431 1.09011 1.21559 0.95857 0.92844 0.82827 1.86662 1.60231 1.38803 1.41636 1.23120 0.79666 0.78245 0.85817 1.90609 1.30127 1.61420 1.60989 1.21952 1.01963 1.02910 0.91670 0.83717 1.23415 1.00498 0.97291 0.94729 1.21012 0.99341 0.87354 1.01310 0.85688 1.20090 0.99097 0.95246 0.97084 1.21792 0.96469 0.92423 0.99352 1.22476 0.97239 1.02184 0.96627 1.23301 0.97336 0.92513 0.94144 1.67751 1.17198 1.04347 1.32655 1.22952 0.91796 0.99777 0.92095 1.20709 0.94064 0.97250 0.96397 1.21164 1.04535 0.92961 1.07854 0.89830 0.87687 0.87472 0.91326 0.91025 0.84246 0.87023 0.83310 0.81779 0.80449 0.81399 0.86500 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.06 10.95 21.83 0.24 -41.82 16 2 C 0.03 1.71 5.14 85.25 0.44 2.15 16 3 Si 0.99 37.31 29.60 68.60 2.03 39.34 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.49 -26.22 9.05 23.46 0.21 -26.01 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 9 C 0.09 4.71 5.58 -21.29 -0.12 4.59 16 10 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 11 C -0.08 -3.71 9.67 22.22 0.21 -3.50 16 12 C -0.23 -10.05 5.54 -19.68 -0.11 -10.16 16 13 C 0.14 5.19 5.58 71.23 0.40 5.59 16 14 O -0.36 -12.49 10.20 -51.36 -0.52 -13.01 16 15 C 0.49 14.52 7.74 71.24 0.55 15.07 16 16 O -0.54 -18.18 16.01 21.97 0.35 -17.83 16 17 C -0.17 -3.49 5.94 -11.54 -0.07 -3.56 16 18 H 0.15 2.80 8.14 -2.38 -0.02 2.78 16 19 C -0.12 -1.87 9.57 30.61 0.29 -1.58 16 20 C -0.07 -1.23 5.58 -11.53 -0.06 -1.29 16 21 H 0.13 2.33 7.67 -2.39 -0.02 2.31 16 22 C -0.11 -1.85 5.62 -19.78 -0.11 -1.96 16 23 C -0.07 -1.06 9.89 22.47 0.22 -0.84 16 24 C -0.17 -1.95 10.11 22.36 0.23 -1.72 16 25 C 0.08 1.18 11.18 84.69 0.95 2.13 16 26 N -0.51 -9.71 10.36 -195.84 -2.03 -11.74 16 27 C 0.09 1.53 10.47 84.67 0.89 2.42 16 28 C -0.07 -2.92 9.67 22.22 0.21 -2.70 16 29 C -0.25 -12.07 9.80 22.73 0.22 -11.85 16 30 H 0.29 13.38 8.30 -92.71 -0.77 12.62 16 31 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 32 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 35 H 0.14 1.41 6.20 -2.39 -0.01 1.40 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.17 2.21 6.04 -2.90 -0.02 2.19 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 42 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -65.34 366.32 5.66 -59.68 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 1.04 Total: 28.63 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 4.55 Total: -43.25 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -1.79 Total: -53.55 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.17 Total: -30.84 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -65.34 5.66 -59.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.422 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds